Rroxscaffold_3G00256890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000606
Physical Location & Seq
Reverse (-)
51338736 .. 51351031
12296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256890.1

Sequence Viewer

Length: 834 bp
ATGCGGTCGCACACGATCTGCAAACAACAGATAACTGCCAGGGAGCACGATCTAAACACAAACGAAGATTCAGACGACGTGGGAGTTGATCGTACTCCATATGGCTCCATCAATACTCATCCCTCACTCAATTTACTGTTCATACAGAAAGAGGAGCAGAGCAAAATCATACAGGAGGAGAAAATTATTATCAAGTCGGCTGACAATTTTGCAGATTCATTTAAGGTACACAGCGACAACGATACTGCCATTGATGCAGGAAGTGGCTCACTTTTTGAGAACAAAGGTTCAGGTCTGAAATGCAATTTTAGGGGTGCACAGAGGAATATTGAATATTTGAGGAATTACTGTATAACATCAAATTCGTTATATTCCAGCGGGAGGCAGAAGAGCAATCTGGCCGTGAAAGGTTGTGAAACCAGTGGTTTCTTGAGCAGGAGAAGATACGAAGTTTCTTCATCACGCTCTCACCCATCCAATGAAGGCCAGAGACCATCCCATGTTCATGCGCCCGACACAGAAAGGCAGAGTACAAATACCTCCCAAGGACAGGGAAGACAAGGAATGAGTTTTGCACAAGCTATTTCATCGCAGTCTCACCCATCTGACGAGGATCAGGGACGCAACCGTCTTCATACACTTGAGGCCGAAAGACAGCGTAGAAATAATCGTCAAAGAGAGAGGCGACAGTCATTAAGTGCTTCACAACGAGCAGAAAGTTTAGCCCGAAGACGTGCTAATTATCACTTACGGCGGCAGATGATAAACACAAGTGTGGAGAACAGAAGTATGGCAAATCAATTAGGAGCAATGGCTGGTAACTTTCTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.29

Weight (kDa)

9.61

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 627
AciI CCGC 3 cut(s) 4, 378, 754
AclWI GGATC 1 cut(s) 621
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 361
AfaI GTAC 3 cut(s) 94, 228, 532
AfiI CCNNNNNNNGG 2 cut(s) 381, 550
AgsI TTSAA 1 cut(s) 332
AjiI CACGTC 2 cut(s) 79, 734
AjnI CCWGG 1 cut(s) 38
AleI CACNNNNGTG 1 cut(s) 773
AluBI AGCT 1 cut(s) 581
AluI AGCT 1 cut(s) 581
Alw21I GWGCWC 2 cut(s) 48, 319
Alw26I GTCTC 2 cut(s) 484, 600
Alw44I GTGCAC 1 cut(s) 315
AlwI GGATC 1 cut(s) 621
AoxI GGCC 3 cut(s) 399, 484, 645
ApaLI GTGCAC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 361
AspLEI GCGC 1 cut(s) 511
AsuHPI GGTGA 2 cut(s) 461, 590
BaeGI GKGCMC 1 cut(s) 319
BbsI GAAGAC 3 cut(s) 562, 623, 736
Bbv12I GWGCWC 2 cut(s) 48, 319
BccI CCATC 4 cut(s) 116, 481, 502, 610
BceAI ACGGC 2 cut(s) 386, 767
BciT130I CCWGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 484, 600
BisI GCNGC 1 cut(s) 755
BlsI GCNGC 1 cut(s) 756
Bme1390I CCNGG 1 cut(s) 40
BmgBI CACGTC 2 cut(s) 79, 734
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 3 cut(s) 562, 623, 736
BpuEI CTTGAG 2 cut(s) 451, 662
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 39, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 550
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 816
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 39, 544
BseGI GGATG 3 cut(s) 118, 473, 494
BseLI CCNNNNNNNGG 2 cut(s) 381, 550
BseMI GCAATG 1 cut(s) 816
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 167, 191
BseSI GKGCMC 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 8
BshFI GGCC 3 cut(s) 401, 486, 647
BsiEI CGRYCG 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 48, 319
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 381, 550
BsmAI GTCTC 2 cut(s) 484, 600
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 3 cut(s) 401, 486, 647
Bso31I GGTCTC 1 cut(s) 484
Bsp1286I GDGCHC 2 cut(s) 48, 319
Bsp143I GATC 4 cut(s) 15, 49, 88, 613
BspACI CCGC 3 cut(s) 4, 378, 754
BspANI GGCC 3 cut(s) 401, 486, 647
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 621
BspQI GCTCTTC 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 816
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 39, 544
BssMI GATC 4 cut(s) 15, 49, 88, 613
BssT1I CCWWGG 1 cut(s) 544
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 4 cut(s) 138, 350, 629, 690
Bst6I CTCTTC 1 cut(s) 383
BstF5I GGATG 3 cut(s) 118, 473, 494
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 4 cut(s) 18, 52, 91, 616
BstMAI GTCTC 2 cut(s) 484, 600
BstMBI GATC 4 cut(s) 15, 49, 88, 613
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 319
BstV2I GAAGAC 3 cut(s) 562, 623, 736
BsuRI GGCC 3 cut(s) 401, 486, 647
BtgZI GCGATG 1 cut(s) 573
BtrI CACGTC 2 cut(s) 79, 734
BtsCI GGATG 3 cut(s) 118, 473, 494
BtsIMutI CAGTG 1 cut(s) 427
CfoI GCGC 1 cut(s) 511
CseI GACGC 1 cut(s) 630
Csp6I GTAC 3 cut(s) 93, 227, 531
CviAII CATG 2 cut(s) 500, 506
CviJI RGCY 9 cut(s) 105, 200, 267, 401, 486, 581, 647, 725, 815
CviKI_1 RGCY 9 cut(s) 105, 200, 267, 401, 486, 581, 647, 725, 815
CviQI GTAC 3 cut(s) 93, 227, 531
DpnI GATC 4 cut(s) 17, 51, 90, 615
DpnII GATC 4 cut(s) 15, 49, 88, 613
DrdI GACNNNNNNGTC 1 cut(s) 627
DseDI GACNNNNNNGTC 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 2 cut(s) 503, 509
FaqI GGGAC 1 cut(s) 633
FatI CATG 2 cut(s) 499, 505
FauI CCCGC 1 cut(s) 371
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 755
FokI GGATG 3 cut(s) 105, 460, 481
Fsp4HI GCNGC 1 cut(s) 755
GlaI GCGC 1 cut(s) 510
GluI GCNGC 1 cut(s) 755
HaeIII GGCC 3 cut(s) 401, 486, 647
HgaI GACGC 1 cut(s) 630
HhaI GCGC 1 cut(s) 511
Hin1II CATG 2 cut(s) 503, 509
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 2 cut(s) 68, 215
HphI GGTGA 2 cut(s) 461, 590
Hpy166II GTNNAC 2 cut(s) 229, 317
Hpy188I TCNGA 3 cut(s) 73, 297, 607
Hpy188III TCNNGA 1 cut(s) 430
Hpy8I GTNNAC 2 cut(s) 229, 317
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 4 cut(s) 138, 350, 629, 690
HpyCH4IV ACGT 2 cut(s) 78, 733
HpyCH4V TGCA 6 cut(s) 21, 212, 257, 303, 317, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpySE526I ACGT 2 cut(s) 78, 733
Hsp92II CATG 2 cut(s) 503, 509
HspAI GCGC 1 cut(s) 509
Kzo9I GATC 4 cut(s) 15, 49, 88, 613
LguI GCTCTTC 1 cut(s) 383
LmnI GCTCC 4 cut(s) 43, 110, 154, 806
LweI GCATC 1 cut(s) 244
MaeII ACGT 2 cut(s) 78, 733
MaeIII GTNAC 1 cut(s) 818
MalI GATC 4 cut(s) 17, 51, 90, 615
MboI GATC 4 cut(s) 15, 49, 88, 613
MboII GAAGA 7 cut(s) 77, 400, 447, 453, 567, 623, 741
MhlI GDGCHC 2 cut(s) 48, 319
MluCI AATT 8 cut(s) 130, 183, 205, 304, 343, 361, 739, 800
MseI TTAA 2 cut(s) 222, 695
MslI CAYNNNNRTG 2 cut(s) 504, 773
MspA1I CMGCKG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeI CATATG 1 cut(s) 100
NdeII GATC 4 cut(s) 15, 49, 88, 613
NlaIII CATG 2 cut(s) 503, 509
NlaIV GGNNCC 1 cut(s) 106
OliI CACNNNNGTG 1 cut(s) 773
PciSI GCTCTTC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 68, 215
PkrI GCNGC 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 106
RsaI GTAC 3 cut(s) 94, 228, 532
RsaNI GTAC 3 cut(s) 93, 227, 531
RseI CAYNNNNRTG 2 cut(s) 504, 773
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 2 cut(s) 222, 695
SatI GCNGC 1 cut(s) 755
Sau3AI GATC 4 cut(s) 15, 49, 88, 613
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 2 cut(s) 48, 319
SetI ASST 8 cut(s) 81, 228, 289, 295, 412, 542, 583, 736
SfaNI GCATC 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 504, 773
SmlI CTYRAG 2 cut(s) 430, 641
SmoI CTYRAG 2 cut(s) 430, 641
Sse9I AATT 8 cut(s) 130, 183, 205, 304, 343, 361, 739, 800
SsiI CCGC 3 cut(s) 4, 378, 754
SspI AATATT 2 cut(s) 328, 335
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 4 cut(s) 138, 350, 629, 690
TaiI ACGT 2 cut(s) 81, 736
TasI AATT 8 cut(s) 130, 183, 205, 304, 343, 361, 739, 800
TatI WGTACW 1 cut(s) 530
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 2 cut(s) 68, 215
Tru1I TTAA 2 cut(s) 222, 695
Tru9I TTAA 2 cut(s) 222, 695
TscAI CASTG 1 cut(s) 427
TspDTI ATGAA 7 cut(s) 130, 207, 447, 494, 495, 576, 623
TspRI CASTG 1 cut(s) 427
VneI GTGCAC 1 cut(s) 315
XapI RAATTY 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.