pycom11g02330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002394
Physical Location & Seq
Forward (+)
2015160 .. 2017253
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g02330.5

Sequence Viewer

Length: 906 bp
ATGACTTCTTTCATTCCACTTGTTCAACAGAAACAAGCAGCTGCAGTTGTAACAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTGCAAAGCGTCTTGCAGAAAAGAAAGAGAATGAACGCAAGATGAAGAAGGAAGCCTTGAAACTTGAGCGGTCAAGAATGGAGCAGGAGAATATGAAGCAATTGGAGGTGCAGAAAAAAAAGAAAGAAGAAGAGAGGAAGAAAAAAGAAGCTGATATGGCATCAAAGAAGAGACAAAGGGAAGAGGAAGAAAGGAAGGAGAAGGAAAGAAAAAGAATGCGTGTTGAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAAAGTAGAGAATGAAATGAAAAGCCAGGCCATTGATGGAAGAGGCCATGGCGGTAAGAAATCTAAGGATGAAACGGCAAATAAGAAGATGGAGGCAGAAAGGGGATTTGACAATTCCAGAAATATTTCGGAGACTCAGCCTAGTACTTCCAGGATTTCAATAAGCAACACCGGAAGAGAAAGTATTGTCCATGAAGAGTTCCATGAGGCCTCGAGTAATTATGGGTATAAAGCAGAGGTACCGAGCGATTTAGACAAAGAAATGGAGAATTCAATTGGCATTACAAGTCAAGAGCAGTCTTATGACATCTCTCCATACAAAGAATCAGATGATGAAAATGACGAGGATGACAATGTCATACCGAATAGTAAATTTATTCCTTCATGGTCAAGATTGTTAAAAACTGCCTGGCTTTTGCCGTTTCTTGCCAGAATAGAGCAGACCCAGCGATCGATCTTCCCCCCAGAAAGCTTTTGCTGCATCTCTGAAGTCCTCTTGCCCCGAAACCATCAATTAAACAACAGCAGAATGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INCENP_ARK-bind

Protein Analysis

302

Amino Acids

35.12

Weight (kDa)

9.02

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
Acc65I GGTACC 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 607
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 331
AciI CCGC 2 cut(s) 166, 420
AcsI RAATTY 2 cut(s) 637, 740
AcuI CTGAAG 2 cut(s) 114, 876
AfaI GTAC 2 cut(s) 514, 609
AgsI TTSAA 5 cut(s) 26, 157, 323, 528, 642
AjnI CCWGG 4 cut(s) 81, 393, 518, 776
AluBI AGCT 5 cut(s) 41, 92, 98, 248, 840
AluI AGCT 5 cut(s) 41, 92, 98, 248, 840
Alw26I GTCTC 2 cut(s) 262, 494
Ama87I CYCGRG 1 cut(s) 580
AoxI GGCC 4 cut(s) 78, 396, 412, 576
ApeKI GCWGC 5 cut(s) 38, 41, 89, 98, 846
ApoI RAATTY 2 cut(s) 637, 740
Asp700I GAANNNNTTC 1 cut(s) 493
Asp718I GGTACC 1 cut(s) 607
AspS9I GGNCC 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 580
BanI GGYRCC 1 cut(s) 607
BbvI GCAGC 5 cut(s) 28, 50, 85, 101, 833
BccI CCATC 3 cut(s) 398, 451, 885
BceAI ACGGC 2 cut(s) 459, 772
BciT130I CCWGG 4 cut(s) 83, 395, 520, 778
BcoDI GTCTC 2 cut(s) 262, 494
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 370
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 5 cut(s) 39, 42, 90, 99, 847
BlsI GCNGC 5 cut(s) 40, 43, 91, 100, 848
BmcAI AGTACT 1 cut(s) 514
Bme1390I CCNGG 4 cut(s) 83, 395, 520, 778
BmeT110I CYCGRG 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 4 cut(s) 83, 395, 520, 778
BmsI GCATC 2 cut(s) 266, 858
BpmI CTGGAG 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 182
Bsa29I ATCGAT 1 cut(s) 821
BsaJI CCNNGG 2 cut(s) 81, 415
BsaWI WCCGGW 1 cut(s) 539
BseBI CCWGG 4 cut(s) 83, 395, 520, 778
BseCI ATCGAT 1 cut(s) 821
BseDI CCNNGG 2 cut(s) 81, 415
BseGI GGATG 2 cut(s) 442, 721
BseMII CTCAG 1 cut(s) 518
BseXI GCAGC 5 cut(s) 28, 50, 85, 101, 833
BseYI CCCAGC 1 cut(s) 813
BsgI GTGCAG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 821
BshFI GGCC 4 cut(s) 80, 398, 414, 578
BshNI GGYRCC 1 cut(s) 607
BshVI ATCGAT 1 cut(s) 821
BsiEI CGRYCG 1 cut(s) 821
BsiHKCI CYCGRG 1 cut(s) 580
BsiSI CCGG 1 cut(s) 540
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 262, 494
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 2 cut(s) 318, 903
BsnI GGCC 4 cut(s) 80, 398, 414, 578
BsoBI CYCGRG 1 cut(s) 580
Bsp143I GATC 2 cut(s) 818, 822
Bsp19I CCATGG 1 cut(s) 415
BspACI CCGC 2 cut(s) 166, 420
BspANI GGCC 4 cut(s) 80, 398, 414, 578
BspCNI CTCAG 1 cut(s) 517
BspDI ATCGAT 1 cut(s) 821
BspLI GGNNCC 1 cut(s) 609
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 607
BsrBI CCGCTC 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 81, 415
BssMI GATC 2 cut(s) 818, 822
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 4 cut(s) 83, 395, 520, 778
Bst6I CTCTTC 6 cut(s) 222, 260, 273, 403, 538, 558
BstDEI CTNAG 2 cut(s) 432, 504
BstDSI CCRYGG 1 cut(s) 415
BstF5I GGATG 2 cut(s) 442, 721
BstKTI GATC 2 cut(s) 821, 825
BstMAI GTCTC 2 cut(s) 262, 494
BstMBI GATC 2 cut(s) 818, 822
BstMCI CGRYCG 1 cut(s) 821
BstMWI GCNNNNNNNGC 6 cut(s) 86, 95, 98, 254, 814, 846
BstNI CCWGG 4 cut(s) 83, 395, 520, 778
BstSCI CCNGG 4 cut(s) 81, 393, 518, 776
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 5 cut(s) 28, 50, 85, 101, 833
Bsu15I ATCGAT 1 cut(s) 821
BsuRI GGCC 4 cut(s) 80, 398, 414, 578
BsuTUI ATCGAT 1 cut(s) 821
BtgI CCRYGG 1 cut(s) 415
BtsCI GGATG 2 cut(s) 442, 721
BveI ACCTGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 821
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 513, 608
CviAII CATG 5 cut(s) 347, 416, 560, 572, 753
CviQI GTAC 2 cut(s) 513, 608
DdeI CTNAG 2 cut(s) 432, 504
DpnI GATC 2 cut(s) 820, 824
DpnII GATC 2 cut(s) 818, 822
Eam1104I CTCTTC 6 cut(s) 222, 260, 273, 403, 538, 558
EarI CTCTTC 6 cut(s) 222, 260, 273, 403, 538, 558
Eco130I CCWWGG 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 578
Eco57I CTGAAG 2 cut(s) 114, 876
Eco88I CYCGRG 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 4 cut(s) 81, 393, 518, 776
EcoT14I CCWWGG 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 5 cut(s) 350, 419, 563, 575, 756
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 77
FatI CATG 5 cut(s) 346, 415, 559, 571, 752
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 5 cut(s) 39, 42, 90, 99, 847
FokI GGATG 2 cut(s) 449, 728
Fsp4HI GCNGC 5 cut(s) 39, 42, 90, 99, 847
FspBI CTAG 1 cut(s) 510
GluI GCNGC 5 cut(s) 39, 42, 90, 99, 847
GsaI CCCAGC 1 cut(s) 817
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 4 cut(s) 80, 398, 414, 578
HapII CCGG 1 cut(s) 540
HgaI GACGC 1 cut(s) 95
Hin1II CATG 5 cut(s) 350, 419, 563, 575, 756
HindIII AAGCTT 1 cut(s) 838
HinfI GANTC 2 cut(s) 502, 692
HpaII CCGG 1 cut(s) 540
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 499, 697, 856
Hpy188III TCNNGA 4 cut(s) 171, 486, 659, 759
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 5 cut(s) 70, 139, 286, 292, 759
HpyCH4V TGCA 5 cut(s) 44, 101, 113, 208, 849
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 95, 98, 254, 814, 846
HpyF3I CTNAG 2 cut(s) 432, 504
Hsp92II CATG 5 cut(s) 350, 419, 563, 575, 756
KpnI GGTACC 1 cut(s) 611
Kzo9I GATC 2 cut(s) 818, 822
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 5 cut(s) 28, 50, 85, 101, 833
LweI GCATC 2 cut(s) 266, 858
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 2 cut(s) 49, 357
MalI GATC 2 cut(s) 820, 824
MbiI CCGCTC 1 cut(s) 166
MboI GATC 2 cut(s) 818, 822
MfeI CAATTG 2 cut(s) 197, 642
MluCI AATT 7 cut(s) 197, 481, 586, 637, 642, 740, 881
MlyI GAGTC 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 493
MseI TTAA 2 cut(s) 767, 884
MslI CAYNNNNRTG 1 cut(s) 71
MspA1I CMGCKG 2 cut(s) 41, 92
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 4 cut(s) 83, 395, 520, 778
MunI CAATTG 2 cut(s) 197, 642
Mva1269I GAATGC 2 cut(s) 318, 903
MvaI CCWGG 4 cut(s) 83, 395, 520, 778
MwoI GCNNNNNNNGC 6 cut(s) 86, 95, 98, 254, 814, 846
NcoI CCATGG 1 cut(s) 415
NdeII GATC 2 cut(s) 818, 822
NlaIII CATG 5 cut(s) 350, 419, 563, 575, 756
NlaIV GGNNCC 1 cut(s) 609
PaeR7I CTCGAG 1 cut(s) 580
PceI AGGCCT 1 cut(s) 578
PctI GAATGC 2 cut(s) 318, 903
PdmI GAANNNNTTC 1 cut(s) 493
PfeI GAWTC 1 cut(s) 692
PflFI GACNNNGTC 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 518
PkrI GCNGC 5 cut(s) 40, 43, 91, 100, 848
Ple19I CGATCG 1 cut(s) 821
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Psp6I CCWGG 4 cut(s) 81, 393, 518, 776
PspFI CCCAGC 1 cut(s) 813
PspGI CCWGG 4 cut(s) 81, 393, 518, 776
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 580
PstI CTGCAG 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 722
PvuI CGATCG 1 cut(s) 821
PvuII CAGCTG 2 cut(s) 41, 92
RsaI GTAC 2 cut(s) 514, 609
RsaNI GTAC 2 cut(s) 513, 608
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 767, 884
SatI GCNGC 5 cut(s) 39, 42, 90, 99, 847
Sau3AI GATC 2 cut(s) 818, 822
Sau96I GGNCC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 514
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 4 cut(s) 83, 395, 520, 778
SetI ASST 8 cut(s) 43, 94, 100, 207, 250, 364, 609, 842
SfaNI GCATC 2 cut(s) 266, 858
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 580
SlaI CTCGAG 1 cut(s) 580
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 161, 580
SmoI CTYRAG 2 cut(s) 161, 580
Sse9I AATT 7 cut(s) 197, 481, 586, 637, 642, 740, 881
SseBI AGGCCT 1 cut(s) 578
SsiI CCGC 2 cut(s) 166, 420
SspI AATATT 1 cut(s) 493
SspMI CTAG 1 cut(s) 510
StuI AGGCCT 1 cut(s) 578
StyD4I CCNGG 4 cut(s) 81, 393, 518, 776
StyI CCWWGG 1 cut(s) 415
TaqI TCGA 2 cut(s) 581, 821
TasI AATT 7 cut(s) 197, 481, 586, 637, 642, 740, 881
TatI WGTACW 1 cut(s) 512
TfiI GAWTC 1 cut(s) 692
Tru1I TTAA 2 cut(s) 767, 884
Tru9I TTAA 2 cut(s) 767, 884
TseI GCWGC 5 cut(s) 38, 41, 89, 98, 846
Tth111I GACNNNGTC 1 cut(s) 722
XapI RAATTY 2 cut(s) 637, 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XhoI CTCGAG 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 493
XspI CTAG 1 cut(s) 510
ZrmI AGTACT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.