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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 |
| fragaria_vesca | FvH4_7g06090 FvH4_7g06090 |
| malus_domestica | MD00G1168200.v1.1 MD00G1168400.v1.1 MD03G1024600.v1.1 MD03G1025200.v1.1 MD03G1025800.v1.1 MD11G1029700.v1.1 MD11G1030200.v1.1 |
| prunus_persica | Prupe.5G032900_v2.0.a1 Prupe.5G032900_v2.0.a1 Prupe.7G022200_v2.0.a1 |
| pyrus_communis | pycom03g02140 pycom03g02150 pycom11g02320 pycom11g02330 |
| rosa_chinensis | RchiOBHm_Chr1g0333641 |
| rosa_laevigata | RLG00000029543 |
| rosa_multiflora | Rmu_sc0002955.1_g000032 Rmu_sc0004487.1_g000019 Rmu_sc0004487.1_g000020 Rmu_sc0038804.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00317360 |
| rosa_rugosa | Rorug01G0110700 Rorug01G0110800 |
| rosa_samantha | Rh1AG133300 Rh1BG102000 Rh1CG127500 Rh1DG139500 |
| rosa_wichuraiana | Rw0G003340 Rw1G011110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2783 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 397 |
| AccB1I | GGYRCC | 1 cut(s) | 4756 |
| AccI | GTMKAC | 4 cut(s) | 1680, 1736, 1946, 4402 |
| AciI | CCGC | 3 cut(s) | 2747, 3347, 4003 |
| AclWI | GGATC | 5 cut(s) | 669, 3093, 3568, 4175, 4658 |
| AcoI | YGGCCR | 2 cut(s) | 301, 1195 |
| AcsI | RAATTY | 8 cut(s) | 236, 535, 1022, 1130, 3121, 3443, 4415, 4634 |
| AcyI | GRCGYC | 1 cut(s) | 4757 |
| AfaI | GTAC | 6 cut(s) | 91, 385, 1980, 2086, 2766, 4278 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 230, 1238, 1441, 2642, 3726, 4453 |
| AflII | CTTAAG | 1 cut(s) | 4679 |
| AflIII | ACRYGT | 1 cut(s) | 2719 |
| AgeI | ACCGGT | 1 cut(s) | 1412 |
| AhlI | ACTAGT | 1 cut(s) | 2741 |
| AjnI | CCWGG | 7 cut(s) | 1434, 1704, 1852, 3484, 3724, 3753, 4446 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1023, 1055, 2050, 2082 |
| AleI | CACNNNNGTG | 1 cut(s) | 4689 |
| Alw21I | GWGCWC | 3 cut(s) | 1048, 2716, 3233 |
| Alw26I | GTCTC | 3 cut(s) | 480, 4169, 4712 |
| AlwI | GGATC | 5 cut(s) | 669, 3093, 3568, 4175, 4658 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4178 |
| Ama87I | CYCGRG | 2 cut(s) | 2360, 4736 |
| ApaI | GGGCCC | 1 cut(s) | 1017 |
| ApoI | RAATTY | 8 cut(s) | 236, 535, 1022, 1130, 3121, 3443, 4415, 4634 |
| AseI | ATTAAT | 1 cut(s) | 2285 |
| AsiGI | ACCGGT | 1 cut(s) | 1412 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 2166, 3196, 3575, 4247 |
| AspA2I | CCTAGG | 1 cut(s) | 4184 |
| AspLEI | GCGC | 1 cut(s) | 4759 |
| AsuC2I | CCSGG | 1 cut(s) | 3083 |
| AsuHPI | GGTGA | 7 cut(s) | 152, 407, 684, 1094, 1427, 2082, 3571 |
| AsuII | TTCGAA | 1 cut(s) | 82 |
| AvaI | CYCGRG | 2 cut(s) | 2360, 4736 |
| AvaII | GGWCC | 4 cut(s) | 584, 1486, 2578, 3009 |
| AvrII | CCTAGG | 1 cut(s) | 4184 |
| AxyI | CCTNAGG | 1 cut(s) | 696 |
| BaeGI | GKGCMC | 1 cut(s) | 1017 |
| BalI | TGGCCA | 2 cut(s) | 303, 1197 |
| BanI | GGYRCC | 1 cut(s) | 4756 |
| BanII | GRGCYC | 4 cut(s) | 73, 1017, 3233, 3648 |
| BbsI | GAAGAC | 4 cut(s) | 966, 1782, 2582, 3963 |
| Bbv12I | GWGCWC | 3 cut(s) | 1048, 2716, 3233 |
| BbvCI | CCTCAGC | 2 cut(s) | 1925, 4713 |
| BciT130I | CCWGG | 7 cut(s) | 1436, 1706, 1854, 3486, 3726, 3755, 4448 |
| BclI | TGATCA | 4 cut(s) | 807, 886, 1660, 2472 |
| BcnI | CCSGG | 1 cut(s) | 3083 |
| BcoDI | GTCTC | 3 cut(s) | 480, 4169, 4712 |
| BcuI | ACTAGT | 1 cut(s) | 2741 |
| BfmI | CTRYAG | 5 cut(s) | 625, 2963, 3399, 3714, 3878 |
| BfoI | RGCGCY | 1 cut(s) | 4760 |
| BfrI | CTTAAG | 1 cut(s) | 4679 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3758 |
| BglII | AGATCT | 4 cut(s) | 50, 287, 2666, 3001 |
| BlnI | CCTAGG | 1 cut(s) | 4184 |
| Bme1390I | CCNGG | 8 cut(s) | 1436, 1706, 1854, 3083, 3486, 3726, 3755, 4448 |
| Bme18I | GGWCC | 4 cut(s) | 584, 1486, 2578, 3009 |
| BmeT110I | CYCGRG | 2 cut(s) | 2360, 4736 |
| BmiI | GGNNCC | 5 cut(s) | 1015, 2580, 2843, 3645, 4758 |
| BmrFI | CCNGG | 8 cut(s) | 1436, 1706, 1854, 3083, 3486, 3726, 3755, 4448 |
| BmrI | ACTGGG | 3 cut(s) | 911, 1693, 2991 |
| BmsI | GCATC | 8 cut(s) | 797, 1320, 1573, 1585, 1864, 2462, 2506, 3975 |
| BmuI | ACTGGG | 3 cut(s) | 911, 1693, 2991 |
| BoxI | GACNNNNGTC | 2 cut(s) | 459, 744 |
| BpiI | GAAGAC | 4 cut(s) | 966, 1782, 2582, 3963 |
| BpmI | CTGGAG | 5 cut(s) | 866, 1953, 2697, 2900, 3776 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1925, 4713 |
| Bpu14I | TTCGAA | 1 cut(s) | 82 |
| BpuEI | CTTGAG | 7 cut(s) | 478, 816, 2176, 2232, 2449, 2531, 2789 |
| BpuMI | CCSGG | 1 cut(s) | 3083 |
| Bsa29I | ATCGAT | 1 cut(s) | 4543 |
| BsaAI | YACGTR | 2 cut(s) | 4037, 4763 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1098 |
| BsaHI | GRCGYC | 1 cut(s) | 4757 |
| BsaJI | CCNNGG | 7 cut(s) | 1434, 2361, 2730, 3725, 3753, 4184, 4530 |
| BsaWI | WCCGGW | 2 cut(s) | 1412, 3557 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1978, 2008, 4180, 4210 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 230, 1238, 1441, 2642, 3726, 4453 |
| Bse118I | RCCGGY | 2 cut(s) | 1412, 2870 |
| Bse1I | ACTGG | 9 cut(s) | 39, 426, 917, 1221, 1688, 1992, 2986, 3606, 4074 |
| Bse21I | CCTNAGG | 1 cut(s) | 696 |
| Bse3DI | GCAATG | 3 cut(s) | 127, 2763, 2808 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1098 |
| BseBI | CCWGG | 7 cut(s) | 1436, 1706, 1854, 3486, 3726, 3755, 4448 |
| BseCI | ATCGAT | 1 cut(s) | 4543 |
| BseDI | CCNNGG | 7 cut(s) | 1434, 2361, 2730, 3725, 3753, 4184, 4530 |
| BseJI | GATNNNNATC | 1 cut(s) | 1098 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 230, 1238, 1441, 2642, 3726, 4453 |
| BseMI | GCAATG | 3 cut(s) | 127, 2763, 2808 |
| BseMII | CTCAG | 7 cut(s) | 687, 1916, 1955, 2279, 2996, 3854, 4704 |
| BseNI | ACTGG | 9 cut(s) | 39, 426, 917, 1221, 1688, 1992, 2986, 3606, 4074 |
| BseRI | GAGGAG | 3 cut(s) | 1532, 1942, 3914 |
| BseSI | GKGCMC | 1 cut(s) | 1017 |
| BseYI | CCCAGC | 4 cut(s) | 22, 481, 608, 1016 |
| BsgI | GTGCAG | 3 cut(s) | 1803, 4059, 4343 |
| BshNI | GGYRCC | 1 cut(s) | 4756 |
| BshTI | ACCGGT | 1 cut(s) | 1412 |
| BshVI | ATCGAT | 1 cut(s) | 4543 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1048, 2716, 3233 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2360, 4736 |
| BsiSI | CCGG | 4 cut(s) | 1413, 2871, 3083, 3558 |
| BslFI | GGGAC | 2 cut(s) | 3472, 3749 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 230, 1238, 1441, 2642, 3726, 4453 |
| BsmAI | GTCTC | 3 cut(s) | 480, 4169, 4712 |
| BsmFI | GGGAC | 2 cut(s) | 3472, 3749 |
| BsmI | GAATGC | 2 cut(s) | 1064, 2036 |
| BsoBI | CYCGRG | 2 cut(s) | 2360, 4736 |
| Bsp119I | TTCGAA | 1 cut(s) | 82 |
| Bsp120I | GGGCCC | 1 cut(s) | 1013 |
| Bsp1286I | GDGCHC | 6 cut(s) | 73, 1017, 1048, 2716, 3233, 3648 |
| Bsp1407I | TGTACA | 1 cut(s) | 1978 |
| BspACI | CCGC | 3 cut(s) | 2747, 3347, 4003 |
| BspCNI | CTCAG | 7 cut(s) | 688, 1917, 1954, 2278, 2997, 3855, 4705 |
| BspDI | ATCGAT | 1 cut(s) | 4543 |
| BspHI | TCATGA | 1 cut(s) | 2131 |
| BspLI | GGNNCC | 5 cut(s) | 1015, 2580, 2843, 3645, 4758 |
| BspMAI | CTGCAG | 3 cut(s) | 3403, 3718, 3882 |
| BspPI | GGATC | 5 cut(s) | 669, 3093, 3568, 4175, 4658 |
| BspT104I | TTCGAA | 1 cut(s) | 82 |
| BspT107I | GGYRCC | 1 cut(s) | 4756 |
| BspTI | CTTAAG | 1 cut(s) | 4679 |
| BsrDI | GCAATG | 3 cut(s) | 127, 2763, 2808 |
| BsrFI | RCCGGY | 2 cut(s) | 1412, 2870 |
| BsrGI | TGTACA | 1 cut(s) | 1978 |
| BsrI | ACTGG | 9 cut(s) | 39, 426, 917, 1221, 1688, 1992, 2986, 3606, 4074 |
| BssAI | RCCGGY | 2 cut(s) | 1412, 2870 |
| BssECI | CCNNGG | 7 cut(s) | 1434, 2361, 2730, 3725, 3753, 4184, 4530 |
| BssNAI | GTATAC | 1 cut(s) | 4403 |
| BssNI | GRCGYC | 1 cut(s) | 4757 |
| BssT1I | CCWWGG | 2 cut(s) | 2730, 4184 |
| Bst1107I | GTATAC | 1 cut(s) | 4403 |
| Bst2UI | CCWGG | 7 cut(s) | 1436, 1706, 1854, 3486, 3726, 3755, 4448 |
| BstACI | GRCGYC | 1 cut(s) | 4757 |
| BstAFI | CTTAAG | 1 cut(s) | 4679 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 4211, 4443 |
| BstAUI | TGTACA | 1 cut(s) | 1978 |
| BstBAI | YACGTR | 2 cut(s) | 4037, 4763 |
| BstBI | TTCGAA | 1 cut(s) | 82 |
| BstDSI | CCRYGG | 1 cut(s) | 4530 |
| BstH2I | RGCGCY | 1 cut(s) | 4760 |
| BstHHI | GCGC | 1 cut(s) | 4759 |
| BstMAI | GTCTC | 3 cut(s) | 480, 4169, 4712 |
| BstNI | CCWGG | 7 cut(s) | 1436, 1706, 1854, 3486, 3726, 3755, 4448 |
| BstNSI | RCATGY | 4 cut(s) | 2723, 2908, 2999, 4730 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 459, 744 |
| BstSCI | CCNGG | 8 cut(s) | 1434, 1704, 1852, 3081, 3484, 3724, 3753, 4446 |
| BstSFI | CTRYAG | 5 cut(s) | 625, 2963, 3399, 3714, 3878 |
| BstSLI | GKGCMC | 1 cut(s) | 1017 |
| BstV2I | GAAGAC | 4 cut(s) | 966, 1782, 2582, 3963 |
| BstX2I | RGATCY | 5 cut(s) | 50, 287, 2666, 3001, 3098 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1480, 4731 |
| BstYI | RGATCY | 5 cut(s) | 50, 287, 2666, 3001, 3098 |
| BstZ17I | GTATAC | 1 cut(s) | 4403 |
| Bsu15I | ATCGAT | 1 cut(s) | 4543 |
| Bsu36I | CCTNAGG | 1 cut(s) | 696 |
| BsuTUI | ATCGAT | 1 cut(s) | 4543 |
| BtgI | CCRYGG | 1 cut(s) | 4530 |
| BtsI | GCAGTG | 2 cut(s) | 1791, 2853 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4178 |
| CciI | TCATGA | 1 cut(s) | 2131 |
| CfoI | GCGC | 1 cut(s) | 4759 |
| Cfr10I | RCCGGY | 2 cut(s) | 1412, 2870 |
| ClaI | ATCGAT | 1 cut(s) | 4543 |
| CseI | GACGC | 4 cut(s) | 1530, 2762, 3460, 3767 |
| Csp6I | GTAC | 6 cut(s) | 90, 384, 1979, 2085, 2765, 4277 |
| CspAI | ACCGGT | 1 cut(s) | 1412 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 408, 443 |
| CviQI | GTAC | 6 cut(s) | 90, 384, 1979, 2085, 2765, 4277 |
| DinI | GGCGCC | 1 cut(s) | 4758 |
| DraI | TTTAAA | 2 cut(s) | 1215, 1296 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 397 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 397 |
| EaeI | YGGCCR | 2 cut(s) | 301, 1195 |
| EciI | GGCGGA | 1 cut(s) | 4018 |
| Ecl136II | GAGCTC | 1 cut(s) | 3231 |
| Eco130I | CCWWGG | 2 cut(s) | 2730, 4184 |
| Eco24I | GRGCYC | 4 cut(s) | 73, 1017, 3233, 3648 |
| Eco32I | GATATC | 2 cut(s) | 162, 4351 |
| Eco47I | GGWCC | 4 cut(s) | 584, 1486, 2578, 3009 |
| Eco53kI | GAGCTC | 1 cut(s) | 3231 |
| Eco81I | CCTNAGG | 1 cut(s) | 696 |
| Eco88I | CYCGRG | 2 cut(s) | 2360, 4736 |
| EcoICRI | GAGCTC | 1 cut(s) | 3231 |
| EcoO109I | RGGNCCY | 5 cut(s) | 584, 1013, 2578, 3623, 3751 |
| EcoRI | GAATTC | 1 cut(s) | 3443 |
| EcoRII | CCWGG | 7 cut(s) | 1434, 1704, 1852, 3484, 3724, 3753, 4446 |
| EcoRV | GATATC | 2 cut(s) | 162, 4351 |
| EcoT14I | CCWWGG | 2 cut(s) | 2730, 4184 |
| EcoT22I | ATGCAT | 1 cut(s) | 4732 |
| EcoT38I | GRGCYC | 4 cut(s) | 73, 1017, 3233, 3648 |
| EgeI | GGCGCC | 1 cut(s) | 4758 |
| EheI | GGCGCC | 1 cut(s) | 4758 |
| ErhI | CCWWGG | 2 cut(s) | 2730, 4184 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2154, 2186 |
| FaqI | GGGAC | 2 cut(s) | 3472, 3749 |
| FbaI | TGATCA | 4 cut(s) | 807, 886, 1660, 2472 |
| FblI | GTMKAC | 4 cut(s) | 1680, 1736, 1946, 4402 |
| FriOI | GRGCYC | 4 cut(s) | 73, 1017, 3233, 3648 |
| GlaI | GCGC | 1 cut(s) | 4758 |
| GsaI | CCCAGC | 4 cut(s) | 26, 485, 612, 1020 |
| GsuI | CTGGAG | 5 cut(s) | 866, 1953, 2697, 2900, 3776 |
| HaeII | RGCGCY | 1 cut(s) | 4760 |
| HapII | CCGG | 4 cut(s) | 1413, 2871, 3083, 3558 |
| HgaI | GACGC | 4 cut(s) | 1530, 2762, 3460, 3767 |
| HhaI | GCGC | 1 cut(s) | 4759 |
| Hin1I | GRCGYC | 1 cut(s) | 4757 |
| Hin6I | GCGC | 1 cut(s) | 4757 |
| HinP1I | GCGC | 1 cut(s) | 4757 |
| HincII | GTYRAC | 1 cut(s) | 1947 |
| HindII | GTYRAC | 1 cut(s) | 1947 |
| HindIII | AAGCTT | 1 cut(s) | 4507 |
| HpaII | CCGG | 4 cut(s) | 1413, 2871, 3083, 3558 |
| HphI | GGTGA | 7 cut(s) | 152, 407, 684, 1094, 1427, 2082, 3571 |
| Hpy99I | CGWCG | 1 cut(s) | 4388 |
| HpyCH4IV | ACGT | 4 cut(s) | 3652, 3805, 4036, 4762 |
| HpySE526I | ACGT | 4 cut(s) | 3652, 3805, 4036, 4762 |
| Hsp92I | GRCGYC | 1 cut(s) | 4757 |
| HspAI | GCGC | 1 cut(s) | 4757 |
| KasI | GGCGCC | 1 cut(s) | 4756 |
| Ksp22I | TGATCA | 4 cut(s) | 807, 886, 1660, 2472 |
| LweI | GCATC | 8 cut(s) | 797, 1320, 1573, 1585, 1864, 2462, 2506, 3975 |
| MaeII | ACGT | 4 cut(s) | 3652, 3805, 4036, 4762 |
| MaeIII | GTNAC | 6 cut(s) | 356, 1424, 1542, 1931, 3653, 4032 |
| MfeI | CAATTG | 2 cut(s) | 618, 1456 |
| MflI | RGATCY | 5 cut(s) | 50, 287, 2666, 3001, 3098 |
| MhlI | GDGCHC | 6 cut(s) | 73, 1017, 1048, 2716, 3233, 3648 |
| MlsI | TGGCCA | 2 cut(s) | 303, 1197 |
| MluNI | TGGCCA | 2 cut(s) | 303, 1197 |
| Mly113I | GGCGCC | 1 cut(s) | 4757 |
| MlyI | GAGTC | 6 cut(s) | 640, 1295, 2308, 3454, 4097, 4714 |
| MmeI | TCCRAC | 4 cut(s) | 893, 2558, 3002, 3852 |
| Mox20I | TGGCCA | 2 cut(s) | 303, 1197 |
| Mph1103I | ATGCAT | 1 cut(s) | 4732 |
| MroXI | GAANNNNTTC | 4 cut(s) | 2166, 3196, 3575, 4247 |
| MscI | TGGCCA | 2 cut(s) | 303, 1197 |
| MslI | CAYNNNNRTG | 6 cut(s) | 654, 1551, 2322, 3743, 4689, 4729 |
| Msp20I | TGGCCA | 2 cut(s) | 303, 1197 |
| MspA1I | CMGCKG | 1 cut(s) | 3713 |
| MspCI | CTTAAG | 1 cut(s) | 4679 |
| MspI | CCGG | 4 cut(s) | 1413, 2871, 3083, 3558 |
| MspR9I | CCNGG | 8 cut(s) | 1436, 1706, 1854, 3083, 3486, 3726, 3755, 4448 |
| MunI | CAATTG | 2 cut(s) | 618, 1456 |
| Mva1269I | GAATGC | 2 cut(s) | 1064, 2036 |
| MvaI | CCWGG | 7 cut(s) | 1436, 1706, 1854, 3486, 3726, 3755, 4448 |
| NarI | GGCGCC | 1 cut(s) | 4757 |
| NciI | CCSGG | 1 cut(s) | 3083 |
| NlaIV | GGNNCC | 5 cut(s) | 1015, 2580, 2843, 3645, 4758 |
| NmuCI | GTSAC | 2 cut(s) | 356, 1542 |
| NsiI | ATGCAT | 1 cut(s) | 4732 |
| NspI | RCATGY | 4 cut(s) | 2723, 2908, 2999, 4730 |
| NspV | TTCGAA | 1 cut(s) | 82 |
| OliI | CACNNNNGTG | 1 cut(s) | 4689 |
| PaeI | GCATGC | 1 cut(s) | 2908 |
| PaeR7I | CTCGAG | 1 cut(s) | 4736 |
| PagI | TCATGA | 1 cut(s) | 2131 |
| PciI | ACATGT | 1 cut(s) | 2719 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4392 |
| PctI | GAATGC | 2 cut(s) | 1064, 2036 |
| PdmI | GAANNNNTTC | 4 cut(s) | 2166, 3196, 3575, 4247 |
| PinAI | ACCGGT | 1 cut(s) | 1412 |
| PleI | GAGTC | 6 cut(s) | 639, 1294, 2307, 3454, 4097, 4713 |
| PluTI | GGCGCC | 1 cut(s) | 4760 |
| PpsI | GAGTC | 6 cut(s) | 639, 1294, 2307, 3454, 4097, 4713 |
| Ppu21I | YACGTR | 2 cut(s) | 4037, 4763 |
| PpuMI | RGGWCCY | 2 cut(s) | 584, 2578 |
| PscI | ACATGT | 1 cut(s) | 2719 |
| PshAI | GACNNNNGTC | 2 cut(s) | 459, 744 |
| PshBI | ATTAAT | 1 cut(s) | 2285 |
| PsiI | TTATAA | 1 cut(s) | 2783 |
| Psp124BI | GAGCTC | 1 cut(s) | 3233 |
| Psp5II | RGGWCCY | 2 cut(s) | 584, 2578 |
| Psp6I | CCWGG | 7 cut(s) | 1434, 1704, 1852, 3484, 3724, 3753, 4446 |
| PspFI | CCCAGC | 4 cut(s) | 22, 481, 608, 1016 |
| PspGI | CCWGG | 7 cut(s) | 1434, 1704, 1852, 3484, 3724, 3753, 4446 |
| PspN4I | GGNNCC | 5 cut(s) | 1015, 2580, 2843, 3645, 4758 |
| PspOMI | GGGCCC | 1 cut(s) | 1013 |
| PspPPI | RGGWCCY | 2 cut(s) | 584, 2578 |
| PspXI | VCTCGAGB | 1 cut(s) | 4736 |
| PstI | CTGCAG | 3 cut(s) | 3403, 3718, 3882 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4178 |
| PsuI | RGATCY | 5 cut(s) | 50, 287, 2666, 3001, 3098 |
| PvuII | CAGCTG | 1 cut(s) | 3713 |
| RsaI | GTAC | 6 cut(s) | 91, 385, 1980, 2086, 2766, 4278 |
| RsaNI | GTAC | 6 cut(s) | 90, 384, 1979, 2085, 2765, 4277 |
| RseI | CAYNNNNRTG | 6 cut(s) | 654, 1551, 2322, 3743, 4689, 4729 |
| SacI | GAGCTC | 1 cut(s) | 3233 |
| SalI | GTCGAC | 1 cut(s) | 1945 |
| SchI | GAGTC | 6 cut(s) | 640, 1295, 2308, 3454, 4097, 4714 |
| ScrFI | CCNGG | 8 cut(s) | 1436, 1706, 1854, 3083, 3486, 3726, 3755, 4448 |
| SduI | GDGCHC | 6 cut(s) | 73, 1017, 1048, 2716, 3233, 3648 |
| SfaNI | GCATC | 8 cut(s) | 797, 1320, 1573, 1585, 1864, 2462, 2506, 3975 |
| SfcI | CTRYAG | 5 cut(s) | 625, 2963, 3399, 3714, 3878 |
| SfoI | GGCGCC | 1 cut(s) | 4758 |
| Sfr274I | CTCGAG | 1 cut(s) | 4736 |
| SfuI | TTCGAA | 1 cut(s) | 82 |
| SinI | GGWCC | 4 cut(s) | 584, 1486, 2578, 3009 |
| SlaI | CTCGAG | 1 cut(s) | 4736 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 654, 1551, 2322, 3743, 4689, 4729 |
| SmlI | CTYRAG | 9 cut(s) | 493, 831, 2155, 2247, 2464, 2510, 2768, 4679, 4736 |
| SmoI | CTYRAG | 9 cut(s) | 493, 831, 2155, 2247, 2464, 2510, 2768, 4679, 4736 |
| SpeI | ACTAGT | 1 cut(s) | 2741 |
| SphI | GCATGC | 1 cut(s) | 2908 |
| SsiI | CCGC | 3 cut(s) | 2747, 3347, 4003 |
| SspDI | GGCGCC | 1 cut(s) | 4756 |
| SspI | AATATT | 2 cut(s) | 3661, 3673 |
| SstI | GAGCTC | 1 cut(s) | 3233 |
| StyD4I | CCNGG | 8 cut(s) | 1434, 1704, 1852, 3081, 3484, 3724, 3753, 4446 |
| StyI | CCWWGG | 2 cut(s) | 2730, 4184 |
| TaiI | ACGT | 4 cut(s) | 3655, 3808, 4039, 4765 |
| TaqI | TCGA | 8 cut(s) | 82, 186, 463, 513, 1946, 4543, 4737, 4776 |
| TatI | WGTACW | 3 cut(s) | 89, 1978, 2764 |
| TseFI | GTSAC | 2 cut(s) | 356, 1542 |
| Tsp45I | GTSAC | 2 cut(s) | 356, 1542 |
| TspGWI | ACGGA | 3 cut(s) | 747, 1607, 4547 |
| Vha464I | CTTAAG | 1 cut(s) | 4679 |
| VpaK11BI | GGWCC | 4 cut(s) | 584, 1486, 2578, 3009 |
| VspI | ATTAAT | 1 cut(s) | 2285 |
| XapI | RAATTY | 8 cut(s) | 236, 535, 1022, 1130, 3121, 3443, 4415, 4634 |
| XbaI | TCTAGA | 4 cut(s) | 290, 1532, 2497, 3424 |
| XceI | RCATGY | 4 cut(s) | 2723, 2908, 2999, 4730 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4076 |
| XhoI | CTCGAG | 1 cut(s) | 4736 |
| XmaJI | CCTAGG | 1 cut(s) | 4184 |
| XmiI | GTMKAC | 4 cut(s) | 1680, 1736, 1946, 4402 |
| XmnI | GAANNNNTTC | 4 cut(s) | 2166, 3196, 3575, 4247 |
| Zsp2I | ATGCAT | 1 cut(s) | 4732 |