No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 |
| fragaria_vesca | FvH4_7g06090 FvH4_7g06090 |
| malus_domestica | MD00G1168200.v1.1 MD00G1168400.v1.1 MD03G1024600.v1.1 MD03G1025200.v1.1 MD03G1025800.v1.1 MD11G1029700.v1.1 MD11G1030200.v1.1 |
| prunus_persica | Prupe.5G032900_v2.0.a1 Prupe.5G032900_v2.0.a1 Prupe.7G022200_v2.0.a1 |
| pyrus_communis | pycom03g02140 pycom03g02150 pycom11g02320 pycom11g02330 |
| rosa_chinensis | RchiOBHm_Chr1g0333641 |
| rosa_laevigata | RLG00000029543 |
| rosa_multiflora | Rmu_sc0002955.1_g000032 Rmu_sc0004487.1_g000019 Rmu_sc0004487.1_g000020 Rmu_sc0038804.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00317360 |
| rosa_rugosa | Rorug01G0110700 Rorug01G0110800 |
| rosa_samantha | Rh1AG133300 Rh1BG102000 Rh1CG127500 Rh1DG139500 |
| rosa_wichuraiana | Rw0G003340 Rw1G011110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1939 |
| Acc36I | ACCTGC | 3 cut(s) | 1570, 3002, 3207 |
| Acc65I | GGTACC | 1 cut(s) | 1990 |
| AccB1I | GGYRCC | 3 cut(s) | 1694, 1956, 1990 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 200, 3778 |
| AccBSI | CCGCTC | 1 cut(s) | 31 |
| AccII | CGCG | 1 cut(s) | 206 |
| AccIII | TCCGGA | 2 cut(s) | 185, 2365 |
| AciI | CCGC | 6 cut(s) | 31, 555, 1440, 3000, 3465, 3596 |
| AcoI | YGGCCR | 3 cut(s) | 2941, 3550, 4117 |
| AcsI | RAATTY | 9 cut(s) | 181, 302, 723, 1210, 1834, 2012, 2350, 3509, 3562 |
| AcuI | CTGAAG | 5 cut(s) | 639, 674, 1627, 1833, 2304 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 200, 503, 1551, 2422, 3109, 3778 |
| AflII | CTTAAG | 1 cut(s) | 3526 |
| AflIII | ACRYGT | 1 cut(s) | 1231 |
| AgeI | ACCGGT | 1 cut(s) | 1460 |
| AhlI | ACTAGT | 2 cut(s) | 2501, 2804 |
| AjnI | CCWGG | 4 cut(s) | 128, 1959, 3327, 4119 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1782, 1814, 4234, 4266 |
| Alw21I | GWGCWC | 5 cut(s) | 299, 685, 2690, 2957, 3706 |
| Alw26I | GTCTC | 8 cut(s) | 854, 1539, 1560, 1761, 2443, 2538, 3561, 4209 |
| Alw44I | GTGCAC | 1 cut(s) | 295 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1822 |
| Ama87I | CYCGRG | 2 cut(s) | 2604, 4102 |
| Aor13HI | TCCGGA | 2 cut(s) | 185, 2365 |
| AoxI | GGCC | 7 cut(s) | 2574, 2593, 2777, 2941, 3294, 3550, 4117 |
| ApaLI | GTGCAC | 1 cut(s) | 295 |
| ApeKI | GCWGC | 8 cut(s) | 61, 208, 1092, 1742, 2024, 3587, 3931, 4539 |
| ApoI | RAATTY | 9 cut(s) | 181, 302, 723, 1210, 1834, 2012, 2350, 3509, 3562 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 308, 340 |
| AseI | ATTAAT | 1 cut(s) | 1725 |
| AsiGI | ACCGGT | 1 cut(s) | 1460 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 845, 1366, 1783 |
| Asp718I | GGTACC | 1 cut(s) | 1990 |
| AspLEI | GCGC | 2 cut(s) | 206, 208 |
| AspS9I | GGNCC | 7 cut(s) | 2389, 2594, 2668, 2778, 3744, 4056, 4137 |
| AsuII | TTCGAA | 1 cut(s) | 910 |
| AvaI | CYCGRG | 2 cut(s) | 2604, 4102 |
| AvaII | GGWCC | 5 cut(s) | 2389, 2668, 3744, 4056, 4137 |
| AxyI | CCTNAGG | 2 cut(s) | 2703, 3426 |
| BaeGI | GKGCMC | 1 cut(s) | 299 |
| BalI | TGGCCA | 2 cut(s) | 2943, 4119 |
| BamHI | GGATCC | 3 cut(s) | 421, 2362, 3391 |
| BanI | GGYRCC | 3 cut(s) | 1694, 1956, 1990 |
| BanII | GRGCYC | 2 cut(s) | 2690, 2957 |
| BauI | CACGAG | 1 cut(s) | 1935 |
| BbsI | GAAGAC | 2 cut(s) | 1633, 1776 |
| Bbv12I | GWGCWC | 5 cut(s) | 299, 685, 2690, 2957, 3706 |
| BbvCI | CCTCAGC | 2 cut(s) | 1482, 3156 |
| BbvI | GCAGC | 8 cut(s) | 73, 195, 1104, 1729, 2011, 3599, 3943, 4551 |
| BccI | CCATC | 9 cut(s) | 1193, 1271, 1430, 1458, 1706, 2084, 2486, 3565, 4082 |
| BciT130I | CCWGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| BciVI | GTATCC | 2 cut(s) | 397, 4177 |
| BclI | TGATCA | 2 cut(s) | 1813, 2482 |
| BcoDI | GTCTC | 8 cut(s) | 854, 1539, 1560, 1761, 2443, 2538, 3561, 4209 |
| BcuI | ACTAGT | 2 cut(s) | 2501, 2804 |
| BfmI | CTRYAG | 5 cut(s) | 815, 1500, 1944, 2200, 2418 |
| BfrI | CTTAAG | 1 cut(s) | 3526 |
| BfuAI | ACCTGC | 3 cut(s) | 1570, 3002, 3207 |
| BfuI | GTATCC | 2 cut(s) | 397, 4177 |
| BglII | AGATCT | 4 cut(s) | 21, 956, 1118, 2927 |
| BisI | GCNGC | 9 cut(s) | 62, 209, 555, 1093, 1743, 2025, 3588, 3932, 4540 |
| BlsI | GCNGC | 9 cut(s) | 63, 210, 556, 1094, 1744, 2026, 3589, 3933, 4541 |
| BmcAI | AGTACT | 2 cut(s) | 1651, 2506 |
| Bme1390I | CCNGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| Bme18I | GGWCC | 5 cut(s) | 2389, 2668, 3744, 4056, 4137 |
| BmeT110I | CYCGRG | 2 cut(s) | 2604, 4102 |
| BmgT120I | GGNCC | 7 cut(s) | 2389, 2594, 2668, 2778, 3744, 4056, 4137 |
| BmiI | GGNNCC | 8 cut(s) | 423, 1696, 1958, 1992, 2364, 3393, 3745, 3890 |
| BmrFI | CCNGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| BmrI | ACTGGG | 5 cut(s) | 804, 1662, 2106, 3186, 4038 |
| BmuI | ACTGGG | 5 cut(s) | 804, 1662, 2106, 3186, 4038 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4610 |
| BpiI | GAAGAC | 2 cut(s) | 1633, 1776 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 180, 212 |
| BpmI | CTGGAG | 7 cut(s) | 354, 423, 2378, 3945, 3947, 4191, 4298 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1482, 3156, 3810, 4571 |
| Bpu14I | TTCGAA | 1 cut(s) | 910 |
| Bsa29I | ATCGAT | 1 cut(s) | 4623 |
| BsaAI | YACGTR | 1 cut(s) | 3767 |
| BsaBI | GATNNNNATC | 3 cut(s) | 700, 1818, 1869 |
| BsaI | GGTCTC | 3 cut(s) | 1539, 1560, 3561 |
| BsaJI | CCNNGG | 9 cut(s) | 128, 199, 1077, 3032, 3060, 3210, 3327, 3777, 4336 |
| BsaWI | WCCGGW | 3 cut(s) | 185, 1460, 2365 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 200, 503, 1551, 2422, 3109, 3778 |
| Bse118I | RCCGGY | 2 cut(s) | 1460, 3552 |
| Bse21I | CCTNAGG | 2 cut(s) | 2703, 3426 |
| Bse3DI | GCAATG | 3 cut(s) | 358, 1214, 3855 |
| Bse8I | GATNNNNATC | 3 cut(s) | 700, 1818, 1869 |
| BseAI | TCCGGA | 2 cut(s) | 185, 2365 |
| BseBI | CCWGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| BseCI | ATCGAT | 1 cut(s) | 4623 |
| BseDI | CCNNGG | 9 cut(s) | 128, 199, 1077, 3032, 3060, 3210, 3327, 3777, 4336 |
| BseJI | GATNNNNATC | 3 cut(s) | 700, 1818, 1869 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 200, 503, 1551, 2422, 3109, 3778 |
| BseMI | GCAATG | 3 cut(s) | 358, 1214, 3855 |
| BseMII | CTCAG | 9 cut(s) | 480, 593, 849, 1496, 3170, 3378, 3801, 4392, 4562 |
| BsePI | GCGCGC | 1 cut(s) | 204 |
| BseRI | GAGGAG | 4 cut(s) | 114, 130, 928, 2211 |
| BseSI | GKGCMC | 1 cut(s) | 299 |
| BseXI | GCAGC | 8 cut(s) | 73, 195, 1104, 1729, 2011, 3599, 3943, 4551 |
| BseYI | CCCAGC | 3 cut(s) | 377, 661, 1314 |
| BsgI | GTGCAG | 3 cut(s) | 38, 528, 1608 |
| Bsh1236I | CGCG | 1 cut(s) | 206 |
| BshFI | GGCC | 7 cut(s) | 2576, 2595, 2779, 2943, 3296, 3552, 4119 |
| BshNI | GGYRCC | 3 cut(s) | 1694, 1956, 1990 |
| BshTI | ACCGGT | 1 cut(s) | 1460 |
| BshVI | ATCGAT | 1 cut(s) | 4623 |
| BsiHKAI | GWGCWC | 5 cut(s) | 299, 685, 2690, 2957, 3706 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2604, 4102 |
| BsiSI | CCGG | 4 cut(s) | 186, 1461, 2366, 3553 |
| BslFI | GGGAC | 1 cut(s) | 3757 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 200, 503, 1551, 2422, 3109, 3778 |
| BsmAI | GTCTC | 8 cut(s) | 854, 1539, 1560, 1761, 2443, 2538, 3561, 4209 |
| BsmFI | GGGAC | 1 cut(s) | 3757 |
| BsmI | GAATGC | 5 cut(s) | 1606, 2241, 3487, 3921, 4315 |
| BsnI | GGCC | 7 cut(s) | 2576, 2595, 2779, 2943, 3296, 3552, 4119 |
| Bso31I | GGTCTC | 3 cut(s) | 1539, 1560, 3561 |
| BsoBI | CYCGRG | 2 cut(s) | 2604, 4102 |
| Bsp119I | TTCGAA | 1 cut(s) | 910 |
| Bsp1286I | GDGCHC | 5 cut(s) | 299, 685, 2690, 2957, 3706 |
| Bsp13I | TCCGGA | 2 cut(s) | 185, 2365 |
| Bsp19I | CCATGG | 1 cut(s) | 199 |
| BspACI | CCGC | 6 cut(s) | 31, 555, 1440, 3000, 3465, 3596 |
| BspANI | GGCC | 7 cut(s) | 2576, 2595, 2779, 2943, 3296, 3552, 4119 |
| BspCNI | CTCAG | 9 cut(s) | 479, 594, 850, 1495, 3169, 3377, 3802, 4393, 4563 |
| BspDI | ATCGAT | 1 cut(s) | 4623 |
| BspEI | TCCGGA | 2 cut(s) | 185, 2365 |
| BspFNI | CGCG | 1 cut(s) | 206 |
| BspHI | TCATGA | 1 cut(s) | 1759 |
| BspLI | GGNNCC | 8 cut(s) | 423, 1696, 1958, 1992, 2364, 3393, 3745, 3890 |
| BspMAI | CTGCAG | 2 cut(s) | 1948, 2422 |
| BspMI | ACCTGC | 3 cut(s) | 1570, 3002, 3207 |
| BspQI | GCTCTTC | 1 cut(s) | 3979 |
| BspT104I | TTCGAA | 1 cut(s) | 910 |
| BspT107I | GGYRCC | 3 cut(s) | 1694, 1956, 1990 |
| BspTI | CTTAAG | 1 cut(s) | 3526 |
| BspTNI | GGTCTC | 3 cut(s) | 1539, 1560, 3561 |
| BsrBI | CCGCTC | 1 cut(s) | 31 |
| BsrDI | GCAATG | 3 cut(s) | 358, 1214, 3855 |
| BsrFI | RCCGGY | 2 cut(s) | 1460, 3552 |
| BssAI | RCCGGY | 2 cut(s) | 1460, 3552 |
| BssECI | CCNNGG | 9 cut(s) | 128, 199, 1077, 3032, 3060, 3210, 3327, 3777, 4336 |
| BssHII | GCGCGC | 1 cut(s) | 204 |
| BssSI | CACGAG | 1 cut(s) | 1935 |
| BssT1I | CCWWGG | 6 cut(s) | 199, 1077, 3060, 3210, 3777, 4336 |
| Bst2BI | CACGAG | 1 cut(s) | 1935 |
| Bst2UI | CCWGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| Bst6I | CTCTTC | 6 cut(s) | 80, 2187, 2853, 3630, 3703, 3979 |
| BstAFI | CTTAAG | 1 cut(s) | 3526 |
| BstBAI | YACGTR | 1 cut(s) | 3767 |
| BstBI | TTCGAA | 1 cut(s) | 910 |
| BstC8I | GCNNGC | 8 cut(s) | 206, 255, 1913, 3204, 3919, 3949, 3953, 3970 |
| BstDSI | CCRYGG | 1 cut(s) | 199 |
| BstFNI | CGCG | 1 cut(s) | 206 |
| BstHHI | GCGC | 2 cut(s) | 206, 208 |
| BstMAI | GTCTC | 8 cut(s) | 854, 1539, 1560, 1761, 2443, 2538, 3561, 4209 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 16, 506, 1483, 2984, 3462, 4130, 4494 |
| BstNI | CCWGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| BstNSI | RCATGY | 8 cut(s) | 879, 1099, 1235, 3686, 3917, 3955, 3972, 4579 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4610 |
| BstSCI | CCNGG | 4 cut(s) | 128, 1959, 3327, 4119 |
| BstSFI | CTRYAG | 5 cut(s) | 815, 1500, 1944, 2200, 2418 |
| BstSLI | GKGCMC | 1 cut(s) | 299 |
| BstUI | CGCG | 1 cut(s) | 206 |
| BstV1I | GCAGC | 8 cut(s) | 73, 195, 1104, 1729, 2011, 3599, 3943, 4551 |
| BstV2I | GAAGAC | 2 cut(s) | 1633, 1776 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3925 |
| Bsu15I | ATCGAT | 1 cut(s) | 4623 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2703, 3426 |
| BsuI | GTATCC | 2 cut(s) | 397, 4177 |
| BsuRI | GGCC | 7 cut(s) | 2576, 2595, 2779, 2943, 3296, 3552, 4119 |
| BsuTUI | ATCGAT | 1 cut(s) | 4623 |
| BtgI | CCRYGG | 1 cut(s) | 199 |
| BtgZI | GCGATG | 1 cut(s) | 1684 |
| BtsI | GCAGTG | 2 cut(s) | 2749, 2898 |
| BveI | ACCTGC | 3 cut(s) | 1570, 3002, 3207 |
| Cac8I | GCNNGC | 8 cut(s) | 206, 255, 1913, 3204, 3919, 3949, 3953, 3970 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1822 |
| CciI | TCATGA | 1 cut(s) | 1759 |
| CfoI | GCGC | 2 cut(s) | 206, 208 |
| Cfr10I | RCCGGY | 2 cut(s) | 1460, 3552 |
| Cfr13I | GGNCC | 7 cut(s) | 2389, 2594, 2668, 2778, 3744, 4056, 4137 |
| ClaI | ATCGAT | 1 cut(s) | 4623 |
| CspAI | ACCGGT | 1 cut(s) | 1460 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1939 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1939 |
| EaeI | YGGCCR | 3 cut(s) | 2941, 3550, 4117 |
| Eam1104I | CTCTTC | 6 cut(s) | 80, 2187, 2853, 3630, 3703, 3979 |
| EarI | CTCTTC | 6 cut(s) | 80, 2187, 2853, 3630, 3703, 3979 |
| EciI | GGCGGA | 1 cut(s) | 3585 |
| Ecl136II | GAGCTC | 2 cut(s) | 2688, 2955 |
| Eco130I | CCWWGG | 6 cut(s) | 199, 1077, 3060, 3210, 3777, 4336 |
| Eco147I | AGGCCT | 1 cut(s) | 2576 |
| Eco24I | GRGCYC | 2 cut(s) | 2690, 2957 |
| Eco31I | GGTCTC | 3 cut(s) | 1539, 1560, 3561 |
| Eco32I | GATATC | 1 cut(s) | 807 |
| Eco47I | GGWCC | 5 cut(s) | 2389, 2668, 3744, 4056, 4137 |
| Eco53kI | GAGCTC | 2 cut(s) | 2688, 2955 |
| Eco57I | CTGAAG | 5 cut(s) | 639, 674, 1627, 1833, 2304 |
| Eco81I | CCTNAGG | 2 cut(s) | 2703, 3426 |
| Eco88I | CYCGRG | 2 cut(s) | 2604, 4102 |
| EcoICRI | GAGCTC | 2 cut(s) | 2688, 2955 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2389, 4137 |
| EcoRI | GAATTC | 2 cut(s) | 181, 1834 |
| EcoRII | CCWGG | 4 cut(s) | 128, 1959, 3327, 4119 |
| EcoRV | GATATC | 1 cut(s) | 807 |
| EcoT14I | CCWWGG | 6 cut(s) | 199, 1077, 3060, 3210, 3777, 4336 |
| EcoT22I | ATGCAT | 2 cut(s) | 877, 3632 |
| EcoT38I | GRGCYC | 2 cut(s) | 2690, 2957 |
| ErhI | CCWWGG | 6 cut(s) | 199, 1077, 3060, 3210, 3777, 4336 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2583, 2615, 2709, 2741 |
| FaqI | GGGAC | 1 cut(s) | 3757 |
| FauI | CCCGC | 1 cut(s) | 3458 |
| FauNDI | CATATG | 2 cut(s) | 1738, 4444 |
| FbaI | TGATCA | 2 cut(s) | 1813, 2482 |
| Fnu4HI | GCNGC | 9 cut(s) | 62, 209, 555, 1093, 1743, 2025, 3588, 3932, 4540 |
| FriOI | GRGCYC | 2 cut(s) | 2690, 2957 |
| Fsp4HI | GCNGC | 9 cut(s) | 62, 209, 555, 1093, 1743, 2025, 3588, 3932, 4540 |
| GlaI | GCGC | 2 cut(s) | 205, 207 |
| GluI | GCNGC | 9 cut(s) | 62, 209, 555, 1093, 1743, 2025, 3588, 3932, 4540 |
| GsaI | CCCAGC | 3 cut(s) | 381, 665, 1318 |
| GsuI | CTGGAG | 7 cut(s) | 354, 423, 2378, 3945, 3947, 4191, 4298 |
| HaeIII | GGCC | 7 cut(s) | 2576, 2595, 2779, 2943, 3296, 3552, 4119 |
| HapII | CCGG | 4 cut(s) | 186, 1461, 2366, 3553 |
| HhaI | GCGC | 2 cut(s) | 206, 208 |
| Hin6I | GCGC | 2 cut(s) | 204, 206 |
| HinP1I | GCGC | 2 cut(s) | 204, 206 |
| HincII | GTYRAC | 5 cut(s) | 49, 1237, 1390, 1470, 1734 |
| HindII | GTYRAC | 5 cut(s) | 49, 1237, 1390, 1470, 1734 |
| HindIII | AAGCTT | 2 cut(s) | 745, 4267 |
| HpaI | GTTAAC | 2 cut(s) | 49, 1390 |
| HpaII | CCGG | 4 cut(s) | 186, 1461, 2366, 3553 |
| HpyAV | CCTTC | 9 cut(s) | 1396, 1423, 1785, 2063, 2238, 2294, 3103, 3734, 3902 |
| HpyCH4IV | ACGT | 3 cut(s) | 1466, 3487, 3766 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 16, 506, 1483, 2984, 3462, 4130, 4494 |
| HpySE526I | ACGT | 3 cut(s) | 1466, 3487, 3766 |
| HspAI | GCGC | 2 cut(s) | 204, 206 |
| Kpn2I | TCCGGA | 2 cut(s) | 185, 2365 |
| KpnI | GGTACC | 1 cut(s) | 1994 |
| Ksp22I | TGATCA | 2 cut(s) | 1813, 2482 |
| KspAI | GTTAAC | 2 cut(s) | 49, 1390 |
| LguI | GCTCTTC | 1 cut(s) | 3979 |
| LmnI | GCTCC | 8 cut(s) | 143, 262, 277, 368, 1171, 3584, 3928, 4279 |
| Lsp1109I | GCAGC | 8 cut(s) | 73, 195, 1104, 1729, 2011, 3599, 3943, 4551 |
| MaeII | ACGT | 3 cut(s) | 1466, 3487, 3766 |
| MaeIII | GTNAC | 6 cut(s) | 230, 430, 1656, 1895, 2330, 4578 |
| MbiI | CCGCTC | 1 cut(s) | 31 |
| MfeI | CAATTG | 1 cut(s) | 3906 |
| MhlI | GDGCHC | 5 cut(s) | 299, 685, 2690, 2957, 3706 |
| MlsI | TGGCCA | 2 cut(s) | 2943, 4119 |
| MluNI | TGGCCA | 2 cut(s) | 2943, 4119 |
| MlyI | GAGTC | 3 cut(s) | 1927, 2204, 2540 |
| MmeI | TCCRAC | 8 cut(s) | 591, 699, 981, 1149, 1475, 2089, 3349, 4049 |
| Mox20I | TGGCCA | 2 cut(s) | 2943, 4119 |
| Mph1103I | ATGCAT | 2 cut(s) | 877, 3632 |
| MroI | TCCGGA | 2 cut(s) | 185, 2365 |
| MroXI | GAANNNNTTC | 3 cut(s) | 845, 1366, 1783 |
| MscI | TGGCCA | 2 cut(s) | 2943, 4119 |
| MslI | CAYNNNNRTG | 5 cut(s) | 831, 1962, 2490, 3384, 3497 |
| Msp20I | TGGCCA | 2 cut(s) | 2943, 4119 |
| MspA1I | CMGCKG | 3 cut(s) | 2141, 3191, 3934 |
| MspCI | CTTAAG | 1 cut(s) | 3526 |
| MspI | CCGG | 4 cut(s) | 186, 1461, 2366, 3553 |
| MspR9I | CCNGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| MunI | CAATTG | 1 cut(s) | 3906 |
| Mva1269I | GAATGC | 5 cut(s) | 1606, 2241, 3487, 3921, 4315 |
| MvaI | CCWGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| MvnI | CGCG | 1 cut(s) | 206 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 16, 506, 1483, 2984, 3462, 4130, 4494 |
| NcoI | CCATGG | 1 cut(s) | 199 |
| NdeI | CATATG | 2 cut(s) | 1738, 4444 |
| NlaIV | GGNNCC | 8 cut(s) | 423, 1696, 1958, 1992, 2364, 3393, 3745, 3890 |
| NmeAIII | GCCGAG | 2 cut(s) | 2744, 3013 |
| NmuCI | GTSAC | 3 cut(s) | 230, 1656, 4578 |
| NsiI | ATGCAT | 2 cut(s) | 877, 3632 |
| NspI | RCATGY | 8 cut(s) | 879, 1099, 1235, 3686, 3917, 3955, 3972, 4579 |
| NspV | TTCGAA | 1 cut(s) | 910 |
| PaeI | GCATGC | 2 cut(s) | 3955, 3972 |
| PaeR7I | CTCGAG | 1 cut(s) | 4102 |
| PagI | TCATGA | 1 cut(s) | 1759 |
| PauI | GCGCGC | 1 cut(s) | 204 |
| PceI | AGGCCT | 1 cut(s) | 2576 |
| PciI | ACATGT | 1 cut(s) | 1231 |
| PciSI | GCTCTTC | 1 cut(s) | 3979 |
| PctI | GAATGC | 5 cut(s) | 1606, 2241, 3487, 3921, 4315 |
| PdmI | GAANNNNTTC | 3 cut(s) | 845, 1366, 1783 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 200, 3778 |
| PinAI | ACCGGT | 1 cut(s) | 1460 |
| PkrI | GCNGC | 9 cut(s) | 63, 210, 556, 1094, 1744, 2026, 3589, 3933, 4541 |
| PleI | GAGTC | 3 cut(s) | 1927, 2203, 2539 |
| PpsI | GAGTC | 3 cut(s) | 1927, 2203, 2539 |
| Ppu21I | YACGTR | 1 cut(s) | 3767 |
| PpuMI | RGGWCCY | 2 cut(s) | 2389, 4137 |
| PscI | ACATGT | 1 cut(s) | 1231 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4610 |
| PshBI | ATTAAT | 1 cut(s) | 1725 |
| Psp124BI | GAGCTC | 2 cut(s) | 2690, 2957 |
| Psp5II | RGGWCCY | 2 cut(s) | 2389, 4137 |
| Psp6I | CCWGG | 4 cut(s) | 128, 1959, 3327, 4119 |
| PspFI | CCCAGC | 3 cut(s) | 377, 661, 1314 |
| PspGI | CCWGG | 4 cut(s) | 128, 1959, 3327, 4119 |
| PspN4I | GGNNCC | 8 cut(s) | 423, 1696, 1958, 1992, 2364, 3393, 3745, 3890 |
| PspPI | GGNCC | 7 cut(s) | 2389, 2594, 2668, 2778, 3744, 4056, 4137 |
| PspPPI | RGGWCCY | 2 cut(s) | 2389, 4137 |
| PspXI | VCTCGAGB | 1 cut(s) | 4102 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 220, 252 |
| PstI | CTGCAG | 2 cut(s) | 1948, 2422 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1822 |
| PteI | GCGCGC | 1 cut(s) | 204 |
| PvuII | CAGCTG | 3 cut(s) | 2141, 3191, 3934 |
| RseI | CAYNNNNRTG | 5 cut(s) | 831, 1962, 2490, 3384, 3497 |
| SacI | GAGCTC | 2 cut(s) | 2690, 2957 |
| SapI | GCTCTTC | 1 cut(s) | 3979 |
| SatI | GCNGC | 9 cut(s) | 62, 209, 555, 1093, 1743, 2025, 3588, 3932, 4540 |
| Sau96I | GGNCC | 7 cut(s) | 2389, 2594, 2668, 2778, 3744, 4056, 4137 |
| ScaI | AGTACT | 2 cut(s) | 1651, 2506 |
| SchI | GAGTC | 3 cut(s) | 1927, 2204, 2540 |
| ScrFI | CCNGG | 4 cut(s) | 130, 1961, 3329, 4121 |
| SduI | GDGCHC | 5 cut(s) | 299, 685, 2690, 2957, 3706 |
| SfcI | CTRYAG | 5 cut(s) | 815, 1500, 1944, 2200, 2418 |
| Sfr274I | CTCGAG | 1 cut(s) | 4102 |
| SfuI | TTCGAA | 1 cut(s) | 910 |
| SinI | GGWCC | 5 cut(s) | 2389, 2668, 3744, 4056, 4137 |
| SlaI | CTCGAG | 1 cut(s) | 4102 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 831, 1962, 2490, 3384, 3497 |
| SpeI | ACTAGT | 2 cut(s) | 2501, 2804 |
| SphI | GCATGC | 2 cut(s) | 3955, 3972 |
| SseBI | AGGCCT | 1 cut(s) | 2576 |
| SsiI | CCGC | 6 cut(s) | 31, 555, 1440, 3000, 3465, 3596 |
| SspI | AATATT | 1 cut(s) | 4000 |
| SstI | GAGCTC | 2 cut(s) | 2690, 2957 |
| StuI | AGGCCT | 1 cut(s) | 2576 |
| StyD4I | CCNGG | 4 cut(s) | 128, 1959, 3327, 4119 |
| StyI | CCWWGG | 6 cut(s) | 199, 1077, 3060, 3210, 3777, 4336 |
| TaiI | ACGT | 3 cut(s) | 1469, 3490, 3769 |
| TatI | WGTACW | 4 cut(s) | 1098, 1649, 1997, 2504 |
| TauI | GCSGC | 1 cut(s) | 557 |
| TseFI | GTSAC | 3 cut(s) | 230, 1656, 4578 |
| TseI | GCWGC | 8 cut(s) | 61, 208, 1092, 1742, 2024, 3587, 3931, 4539 |
| Tsp45I | GTSAC | 3 cut(s) | 230, 1656, 4578 |
| TspGWI | ACGGA | 3 cut(s) | 126, 355, 4459 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 200, 3778 |
| Vha464I | CTTAAG | 1 cut(s) | 3526 |
| VneI | GTGCAC | 1 cut(s) | 295 |
| VpaK11BI | GGWCC | 5 cut(s) | 2389, 2668, 3744, 4056, 4137 |
| VspI | ATTAAT | 1 cut(s) | 1725 |
| XapI | RAATTY | 9 cut(s) | 181, 302, 723, 1210, 1834, 2012, 2350, 3509, 3562 |
| XbaI | TCTAGA | 4 cut(s) | 959, 1121, 2930, 4036 |
| XceI | RCATGY | 8 cut(s) | 879, 1099, 1235, 3686, 3917, 3955, 3972, 4579 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1526 |
| XhoI | CTCGAG | 1 cut(s) | 4102 |
| XmnI | GAANNNNTTC | 3 cut(s) | 845, 1366, 1783 |
| ZrmI | AGTACT | 2 cut(s) | 1651, 2506 |
| Zsp2I | ATGCAT | 2 cut(s) | 877, 3632 |