Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Reverse (-)

20156472 .. 20158106

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1095500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCGCTCCACTCGCCCTTGGGTTCGCGTTTGTCAGGATACTATCAAAAATGGTAAGGCCGGAAAGAAAGGGCAGTGTATAGAGAGTGCAATGAATGCGTTGAAAGATGGGAAGAGTGTGTTTATAGATAGGTGTAATGTAGAGAAAGAACAAAGGGATGATTTTGTGAAGCTTGGTGGTAGTTCCCAAGTTGATGTTCATGATGTGGTGCTTGATCTTCCTGCCAAGCTTTGTATATTGCGGTATGTGAAGCGAAAGGGCCATGAAGGAAAAGTGGAAGGTGGGAAAGCTGTGGCGATTGTGAATAGAATGCTGCAGAAGAAAGAACTACCTAAGCTGAGTGAAGGGTTTGCTAGAATTACTTGTTGCCAGAGTGAGAGTGATGTTCAATCTTCCGTTGATGCATATAGTGGACTTGGTCCGTTAGATACACTTCCCAATGGTTATTTTGGTCAGAAGAACCCCGGTGCAAAAATTCAACTAGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

164

Amino Acids

17.85

Weight (kDa)

9.33

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AciI	CCGC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	103, 389, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	4 cut(s)	172, 229, 290, 337
AluI	AGCT	4 cut(s)	172, 229, 290, 337
AoxI	GGCC	2 cut(s)	57, 259
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	259, 419
AsuC2I	CCSGG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	1 cut(s)	101
BciVI	GTATCC	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	465
BfaI	CTAG	2 cut(s)	354, 482
BfmI	CTRYAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	259, 419
BmrFI	CCNGG	1 cut(s)	465
BmsI	GCATC	1 cut(s)	391
Bpu10I	CCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	17, 463
Bse3DI	GCAATG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	17, 463
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	59, 261
BsiSI	CCGG	2 cut(s)	60, 465
BsmI	GAATGC	2 cut(s)	100, 315
BsnI	GGCC	2 cut(s)	59, 261
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	59, 261
BspCNI	CTCAG	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	17, 463
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	333, 338
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 95
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	59, 261
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	259, 419
CviAII	CATG	2 cut(s)	200, 263
CviJI	RGCY	6 cut(s)	59, 172, 229, 261, 290, 337
CviKI_1	RGCY	6 cut(s)	59, 172, 229, 261, 290, 337
DdeI	CTNAG	2 cut(s)	333, 338
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	203, 266
FaiI	YATR	8 cut(s)	80, 125, 201, 236, 246, 264, 406, 408
FatI	CATG	2 cut(s)	199, 262
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	2 cut(s)	354, 482
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	59, 261
HapII	CCGG	2 cut(s)	60, 465
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	203, 266
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	2 cut(s)	170, 227
HpaII	CCGG	2 cut(s)	60, 465
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	35, 200
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	3 cut(s)	260, 272, 338
HpyCH4V	TGCA	4 cut(s)	89, 316, 404, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 95
HpyF3I	CTNAG	2 cut(s)	333, 338
Hsp92II	CATG	2 cut(s)	203, 266
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	5 cut(s)	20, 73, 234, 383, 478
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	354, 482
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	5 cut(s)	124, 209, 331, 384, 469
MluCI	AATT	2 cut(s)	357, 474
Mph1103I	ATGCAT	1 cut(s)	406
MspI	CCGG	2 cut(s)	60, 465
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	2 cut(s)	100, 315
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	12, 95
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	203, 266
NsiI	ATGCAT	1 cut(s)	406
PagI	TCATGA	1 cut(s)	199
PctI	GAATGC	2 cut(s)	100, 315
PflFI	GACNNNGTC	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	259, 419
PstI	CTGCAG	1 cut(s)	318
PsyI	GACNNNGTC	1 cut(s)	417
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	259, 419
ScrFI	CCNGG	1 cut(s)	465
SetI	ASST	8 cut(s)	134, 174, 231, 283, 292, 334, 339, 487
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	2 cut(s)	357, 474
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	2 cut(s)	354, 482
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	17
TasI	AATT	2 cut(s)	357, 474
TscAI	CASTG	1 cut(s)	80
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	107, 188, 279
TspGWI	ACGGA	2 cut(s)	385, 411
TspRI	CASTG	1 cut(s)	80
Tth111I	GACNNNGTC	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	474
XspI	CTAG	2 cut(s)	354, 482
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.