Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Reverse (-)

39179670 .. 39183109

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGGACATGGATGTTGATGAACTAACCAAAGGCGAACAAGAAAAGCAAGGAAAGCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGCGGCAAGTCCACATTCTGCGAACAGGTCATGGGCTCCTCTGTTCGTCCCTGGGTCCGGGTCTGCCAGGATACTATCAAGAATGGGAAAGCCGGAACGAAAGCTCAGTGTATAGAGAGTGCGAGGGGTGCATTGAGGGAAGGGAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAGCAAAGAGATGAGTTTGTGAAGCTTGGTGGTCCTCAAGTGGATGTTCATGCTGTGGTGCTTGATCTTCCTGCTAAGCTTTGTACTTCACGGTCGGTGAAGCGAACTGGCCATGAGGGAAACTTGCAAGGCGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGGTAGGATCACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTCGTACATATAGTGGACTTGGTCCGTTGGATACACTTCCCCATGGCACTTTTGGCCAGAAGAGCCCGGGTGCAAAAGTTCAGCTTGGTATAATGAAATTCCTAAAGAAAACAGATGCTCCTGCTAATACTGAATCGACTTCGAACAAGGTTCAGGATTCTAATGCTTCTCAAATTACTGGGGGAAAGGATACCAGTGTGAAAGGAGCAGGTTTGTTTACGGAAAGTGGTAGTATGGAGTCCAAGAAAGGTGAACGGCCTGTCGTAGGTTCTGCTGGCACTGATGTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCTAGACTTGTTTTAGTGGACTTGACACATAAATCGAAGATTTTATCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACATCGACTCCAACAGGTTCTTCACATTTGTTGGAGATATCACTAAGCTTCATTCAGAAGGAGGTCTTCGCTGCAATGTGATAGCTAATGCTGCTAACTGGCGACTTAAACCAGGAGGTGGTGGTGTCAATGCTGCAATCTTCAATGCTGGAGGTCCAGCCTTAGAGGTTGCAACCAAAGAACAAGCCAAATCTCTGTATCCTGGGAATGCTGTGGTTGTTCCTCTCCCTTCAACTTCTCCCTTGTTTTGTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAACCCACAGAGACCAAATTATCTTGACAATGACTATAGTAAAGGCTGCAAAATTCTCCATGACACTTATACTTCACTTTTCGAAGGTTTTGCATCAATAGTGAGGACCCAAAAGAAGGTATTTAAGGGAAGCTTTGGAAACCTTCGGTTGAAGCTGCCAGAGTCAGAAGATCACTCTGAGAGCGGGCCTACAAATCACTCTACAAATACCTATCAAAAGATCAAGAGAGAGAATCTTCATGAATCTGAAAGGAACAAACGGAGTAAAGGAGATCCAGCTGAAGCTGAAAATGTCTCTGATTCTAATTCTGGTAAATCAAACCTCCAGTCTGATGGAAGCAAGAATAAATCCTGGGGAACATGGGCTCAGGCTCTCTACAACATTGCCATGCATCCAGAGAAGCAGAGGGATGTAGTACTAGAAATATCAGATGATGTCGTTGTACTAAATGATCTTTATCCAAAGGCACAAAAGCATCTCCTGGTGGTAGCGCGACATCCTGGTCTTGATCGCTTGGCAGATGTATGCAAAGAACACATTCAGTTGCTAAGGACAATGCATGCAGTTGGTTTGAAGTGGGCTGAAAAGTTCTTACATGATGATTCAACATTGGTCTTTCGTCTTGGATATCACTCGGATCCATCAATGCGACAGCTGCATCTTCATGTAATCAGCCAGGATTTTAATTCAGCACATTTGAAGAACAAGAAACATTGGAACTCCTTTAATACTGCTTTCTTTCGAGACTCTGTGGATGTGCTAGAGGAAGTCAGTAGTGACGGGAAGGCAATACTGAATGATGATGAGAGCCTGATGTCTGTGGAGTTACGATGTAATCGATGTAGAAGTGCTCACCCCACCATTCCCAAATTGAAATTGCACATTGGCAGATGTCGAGCCTCCTTCCCGAGCACCCTGCTTGAAAATGGTCGGCTGGTAACTGCATCAAGCAATTTCAGCAATGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

756

Amino Acids

82.67

Weight (kDa)

8.85

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	22 - 148	1.3e-12	AAA domain
Macro	PF01661	364 - 445	1.2e-06	Macro domain
DcpS_C	PF11969	558 - 671	1.8e-24	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	567 - 660	8.9e-09	HIT domain
zf-C2HE	PF16278	676 - 728	4.5e-08	C2HE / C2H2 / C2HC zinc-binding finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1800
Acc36I	ACCTGC	1 cut(s)	713
AccB7I	CCANNNNNTGG	1 cut(s)	1121
AccBSI	CCGCTC	1 cut(s)	1482
AccII	CGCG	1 cut(s)	1792
AciI	CCGC	4 cut(s)	90, 399, 410, 1482
AclWI	GGATC	5 cut(s)	482, 1565, 1931, 1944, 2258
AcoI	YGGCCR	2 cut(s)	376, 568
AcsI	RAATTY	3 cut(s)	611, 905, 1350
AcuI	CTGAAG	1 cut(s)	1599
AfaI	GTAC	4 cut(s)	352, 520, 1716, 1743
AfiI	CCNNNNNNNGG	7 cut(s)	89, 144, 779, 871, 981, 1121, 1414
AflIII	ACRYGT	1 cut(s)	1279
AgsI	TTSAA	9 cut(s)	506, 1147, 1236, 1450, 1873, 1905, 1999, 2173, 2222
AjnI	CCWGG	9 cut(s)	137, 153, 822, 1114, 1204, 1649, 1779, 1798, 1974
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
Alw21I	GWGCWC	3 cut(s)	82, 2152, 2213
Alw26I	GTCTC	4 cut(s)	805, 1303, 1597, 2037
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	5 cut(s)	482, 1565, 1931, 1944, 2258
Ama87I	CYCGRG	2 cut(s)	580, 2206
AoxI	GGCC	4 cut(s)	376, 568, 770, 1484
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	8 cut(s)	407, 430, 1074, 1094, 1136, 1344, 1453, 1954
ApoI	RAATTY	3 cut(s)	611, 905, 1350
ArsI	GACNNNNNNTTYG	2 cut(s)	1610, 1642
Asp700I	GAANNNNTTC	1 cut(s)	1836
AspLEI	GCGC	1 cut(s)	1792
AspS9I	GGNCC	7 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484
AsuC2I	CCSGG	4 cut(s)	84, 146, 581, 582
AsuHPI	GGTGA	4 cut(s)	376, 776, 991, 2144
AsuII	TTCGAA	2 cut(s)	656, 1380
AvaI	CYCGRG	2 cut(s)	580, 2206
AvaII	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
BaeGI	GKGCMC	1 cut(s)	82
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	2 cut(s)	378, 570
BamHI	GGATCC	1 cut(s)	1936
BanII	GRGCYC	3 cut(s)	125, 581, 1666
BbsI	GAAGAC	1 cut(s)	1061
Bbv12I	GWGCWC	3 cut(s)	82, 2152, 2213
BbvI	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
BccI	CCATC	4 cut(s)	67, 841, 1625, 1948
BceAI	ACGGC	1 cut(s)	785
BcgI	CGANNNNNNTGC	4 cut(s)	1370, 1404, 2197, 2231
BciT130I	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
BciVI	GTATCC	4 cut(s)	151, 538, 697, 1212
BcnI	CCSGG	4 cut(s)	84, 146, 581, 582
BcoDI	GTCTC	4 cut(s)	805, 1303, 1597, 2037
BfaI	CTAG	3 cut(s)	930, 1718, 2060
BfmI	CTRYAG	2 cut(s)	431, 1333
BfuAI	ACCTGC	1 cut(s)	713
BfuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BlpI	GCTNAGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	1716
Bme18I	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
BmeT110I	CYCGRG	2 cut(s)	580, 2206
BmgT120I	GGNCC	7 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484
BmiI	GGNNCC	5 cut(s)	124, 143, 1291, 1406, 1938
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	8 cut(s)	242, 619, 884, 1400, 1699, 1783, 1966, 2252
BmuI	ACTGGG	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	1061
BpmI	CTGGAG	3 cut(s)	281, 1173, 1607
Bpu10I	CCTNAGC	2 cut(s)	1665, 1847
Bpu1102I	GCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	2 cut(s)	656, 1380
BpuEI	CTTGAG	2 cut(s)	288, 887
BpuMI	CCSGG	4 cut(s)	84, 146, 581, 582
Bsa29I	ATCGAT	1 cut(s)	2137
BsaBI	GATNNNNATC	1 cut(s)	1755
BsaI	GGTCTC	1 cut(s)	1303
BsaJI	CCNNGG	8 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 995, 1025
Bsc4I	CCNNNNNNNGG	7 cut(s)	89, 144, 779, 871, 981, 1121, 1414
Bse1I	ACTGG	5 cut(s)	379, 697, 708, 1106, 1624
Bse3DI	GCAATG	3 cut(s)	1084, 1680, 2266
Bse8I	GATNNNNATC	1 cut(s)	1755
BseBI	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
BseCI	ATCGAT	1 cut(s)	2137
BseDI	CCNNGG	8 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650
BseGI	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BseJI	GATNNNNATC	1 cut(s)	1755
BseLI	CCNNNNNNNGG	7 cut(s)	89, 144, 779, 871, 981, 1121, 1414
BseMI	GCAATG	3 cut(s)	1084, 1680, 2266
BseMII	CTCAG	4 cut(s)	206, 446, 1467, 1679
BseNI	ACTGG	5 cut(s)	379, 697, 708, 1106, 1624
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
Bsh1236I	CGCG	1 cut(s)	1792
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	4 cut(s)	378, 570, 772, 1486
BshVI	ATCGAT	1 cut(s)	2137
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	3 cut(s)	82, 2152, 2213
BsiHKCI	CYCGRG	2 cut(s)	580, 2206
BsiSI	CCGG	4 cut(s)	84, 145, 180, 581
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	7 cut(s)	89, 144, 779, 871, 981, 1121, 1414
BsmAI	GTCTC	4 cut(s)	805, 1303, 1597, 2037
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	2 cut(s)	432, 1216
BsnI	GGCC	4 cut(s)	378, 570, 772, 1486
Bso31I	GGTCTC	1 cut(s)	1303
BsoBI	CYCGRG	2 cut(s)	580, 2206
Bsp119I	TTCGAA	2 cut(s)	656, 1380
Bsp1286I	GDGCHC	6 cut(s)	82, 125, 581, 1666, 2152, 2213
Bsp143I	GATC	9 cut(s)	331, 474, 1468, 1518, 1570, 1750, 1807, 1936, 2263
Bsp1720I	GCTNAGC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	4 cut(s)	90, 399, 410, 1482
BspANI	GGCC	4 cut(s)	378, 570, 772, 1486
BspCNI	CTCAG	4 cut(s)	205, 447, 1468, 1678
BspDI	ATCGAT	1 cut(s)	2137
BspFNI	CGCG	1 cut(s)	1792
BspHI	TCATGA	1 cut(s)	1537
BspLI	GGNNCC	5 cut(s)	124, 143, 1291, 1406, 1938
BspMAI	CTGCAG	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	713
BspPI	GGATC	5 cut(s)	482, 1565, 1931, 1944, 2258
BspQI	GCTCTTC	1 cut(s)	569
BspT104I	TTCGAA	2 cut(s)	656, 1380
BspTNI	GGTCTC	1 cut(s)	1303
BsrBI	CCGCTC	1 cut(s)	1482
BsrDI	GCAATG	3 cut(s)	1084, 1680, 2266
BsrI	ACTGG	5 cut(s)	379, 697, 708, 1106, 1624
BssECI	CCNNGG	8 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650
BssMI	GATC	9 cut(s)	331, 474, 1468, 1518, 1570, 1750, 1807, 1936, 2263
BssT1I	CCWWGG	2 cut(s)	556, 975
Bst2UI	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	2 cut(s)	227, 569
BstBI	TTCGAA	2 cut(s)	656, 1380
BstC8I	GCNNGC	3 cut(s)	790, 1484, 1860
BstDEI	CTNAG	8 cut(s)	192, 342, 455, 1047, 1165, 1476, 1665, 1847
BstDSI	CCRYGG	1 cut(s)	556
BstEII	GGTNACC	1 cut(s)	1264
BstENI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
BstF5I	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BstFNI	CGCG	1 cut(s)	1792
BstHHI	GCGC	1 cut(s)	1792
BstKTI	GATC	9 cut(s)	334, 477, 1471, 1521, 1573, 1753, 1810, 1939, 2266
BstMAI	GTCTC	4 cut(s)	805, 1303, 1597, 2037
BstMBI	GATC	9 cut(s)	331, 474, 1468, 1518, 1570, 1750, 1807, 1936, 2263
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 215, 567, 576, 1094, 1954, 2256
BstNI	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
BstNSI	RCATGY	2 cut(s)	1283, 1862
BstPI	GGTNACC	1 cut(s)	1264
BstSFI	CTRYAG	2 cut(s)	431, 1333
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	1792
BstV1I	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
BstV2I	GAAGAC	1 cut(s)	1061
BstX2I	RGATCY	2 cut(s)	1570, 1936
BstXI	CCANNNNNNTGG	1 cut(s)	1631
BstYI	RGATCY	2 cut(s)	1570, 1936
Bsu15I	ATCGAT	1 cut(s)	2137
BsuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BsuRI	GGCC	4 cut(s)	378, 570, 772, 1486
BsuTUI	ATCGAT	1 cut(s)	2137
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BtsIMutI	CAGTG	3 cut(s)	200, 715, 792
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	3 cut(s)	790, 1484, 1860
CciI	TCATGA	1 cut(s)	1537
CfoI	GCGC	1 cut(s)	1792
Cfr13I	GGNCC	7 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484
Cfr9I	CCCGGG	1 cut(s)	580
ClaI	ATCGAT	1 cut(s)	2137
Csp6I	GTAC	4 cut(s)	351, 519, 1715, 1742
CviQI	GTAC	4 cut(s)	351, 519, 1715, 1742
DdeI	CTNAG	8 cut(s)	192, 342, 455, 1047, 1165, 1476, 1665, 1847
DpnI	GATC	9 cut(s)	333, 476, 1470, 1520, 1572, 1752, 1809, 1938, 2265
DpnII	GATC	9 cut(s)	331, 474, 1468, 1518, 1570, 1750, 1807, 1936, 2263
DrdI	GACNNNNNNGTC	1 cut(s)	1800
DseDI	GACNNNNNNGTC	1 cut(s)	1800
EaeI	YGGCCR	2 cut(s)	376, 568
Eam1104I	CTCTTC	2 cut(s)	227, 569
EarI	CTCTTC	2 cut(s)	227, 569
EciI	GGCGGA	1 cut(s)	414
Eco130I	CCWWGG	2 cut(s)	556, 975
Eco24I	GRGCYC	3 cut(s)	125, 581, 1666
Eco31I	GGTCTC	1 cut(s)	1303
Eco32I	GATATC	2 cut(s)	1042, 1928
Eco47I	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
Eco57I	CTGAAG	1 cut(s)	1599
Eco88I	CYCGRG	2 cut(s)	580, 2206
Eco91I	GGTNACC	1 cut(s)	1264
EcoNI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
EcoO109I	RGGNCCY	1 cut(s)	1404
EcoO65I	GGTNACC	1 cut(s)	1264
EcoRII	CCWGG	9 cut(s)	137, 153, 822, 1114, 1204, 1649, 1779, 1798, 1974
EcoRV	GATATC	2 cut(s)	1042, 1928
EcoT14I	CCWWGG	2 cut(s)	556, 975
EcoT22I	ATGCAT	2 cut(s)	1692, 1860
EcoT38I	GRGCYC	3 cut(s)	125, 581, 1666
ErhI	CCWWGG	2 cut(s)	556, 975
FalI	AAGNNNNNCTT	6 cut(s)	582, 614, 1053, 1085, 1415, 1447
FaqI	GGGAC	1 cut(s)	120
FauI	CCCGC	1 cut(s)	1475
FokI	GGATG	6 cut(s)	23, 323, 1677, 1721, 1782, 2066
FriOI	GRGCYC	3 cut(s)	125, 581, 1666
FspBI	CTAG	3 cut(s)	930, 1718, 2060
GlaI	GCGC	1 cut(s)	1791
GsuI	CTGGAG	3 cut(s)	281, 1173, 1607
HaeIII	GGCC	4 cut(s)	378, 570, 772, 1486
HapII	CCGG	4 cut(s)	84, 145, 180, 581
HhaI	GCGC	1 cut(s)	1792
Hin6I	GCGC	1 cut(s)	1790
HinP1I	GCGC	1 cut(s)	1790
HindIII	AAGCTT	5 cut(s)	290, 344, 990, 1049, 1429
HpaII	CCGG	4 cut(s)	84, 145, 180, 581
HphI	GGTGA	4 cut(s)	376, 776, 991, 2144
Hpy166II	GTNNAC	6 cut(s)	80, 99, 530, 732, 767, 946
Hpy8I	GTNNAC	6 cut(s)	80, 99, 530, 732, 767, 946
HpyCH4III	ACNGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 215, 567, 576, 1094, 1954, 2256
HpyF3I	CTNAG	8 cut(s)	192, 342, 455, 1047, 1165, 1476, 1665, 1847
HspAI	GCGC	1 cut(s)	1790
Kzo9I	GATC	9 cut(s)	331, 474, 1468, 1518, 1570, 1750, 1807, 1936, 2263
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	4 cut(s)	128, 637, 719, 820
Lsp1109I	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
LweI	GCATC	8 cut(s)	242, 619, 884, 1400, 1699, 1783, 1966, 2252
MaeI	CTAG	3 cut(s)	930, 1718, 2060
MaeIII	GTNAC	4 cut(s)	1264, 2075, 2124, 2236
MalI	GATC	9 cut(s)	333, 476, 1470, 1520, 1572, 1752, 1809, 1938, 2265
MbiI	CCGCTC	1 cut(s)	1482
MboI	GATC	9 cut(s)	331, 474, 1468, 1518, 1570, 1750, 1807, 1936, 2263
MflI	RGATCY	2 cut(s)	1570, 1936
MhlI	GDGCHC	6 cut(s)	82, 125, 581, 1666, 2152, 2213
MlsI	TGGCCA	2 cut(s)	378, 570
MluNI	TGGCCA	2 cut(s)	378, 570
MlyI	GAGTC	4 cut(s)	761, 1004, 1469, 2039
MmeI	TCCRAC	3 cut(s)	522, 1015, 1038
Mox20I	TGGCCA	2 cut(s)	378, 570
Mph1103I	ATGCAT	2 cut(s)	1692, 1860
MroXI	GAANNNNTTC	1 cut(s)	1836
MscI	TGGCCA	2 cut(s)	378, 570
MseI	TTAA	4 cut(s)	1110, 1422, 1983, 2025
MslI	CAYNNNNRTG	2 cut(s)	1685, 1962
Msp20I	TGGCCA	2 cut(s)	378, 570
MspA1I	CMGCKG	2 cut(s)	1577, 1954
MspI	CCGG	4 cut(s)	84, 145, 180, 581
Mva1269I	GAATGC	2 cut(s)	432, 1216
MvaI	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
MvnI	CGCG	1 cut(s)	1792
MwoI	GCNNNNNNNGC	7 cut(s)	52, 215, 567, 576, 1094, 1954, 2256
NciI	CCSGG	4 cut(s)	84, 146, 581, 582
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	9 cut(s)	331, 474, 1468, 1518, 1570, 1750, 1807, 1936, 2263
NlaIV	GGNNCC	5 cut(s)	124, 143, 1291, 1406, 1938
NmuCI	GTSAC	1 cut(s)	2075
NsiI	ATGCAT	2 cut(s)	1692, 1860
NspI	RCATGY	2 cut(s)	1283, 1862
NspV	TTCGAA	2 cut(s)	656, 1380
PaeI	GCATGC	1 cut(s)	1862
PagI	TCATGA	1 cut(s)	1537
PasI	CCCWGGG	1 cut(s)	138
PciI	ACATGT	1 cut(s)	1279
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	2134
PctI	GAATGC	2 cut(s)	432, 1216
PdmI	GAANNNNTTC	1 cut(s)	1836
PfeI	GAWTC	8 cut(s)	451, 506, 647, 671, 1531, 1541, 1598, 1901
PflFI	GACNNNGTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	1121
PleI	GAGTC	4 cut(s)	760, 1004, 1468, 2039
PpsI	GAGTC	4 cut(s)	760, 1004, 1468, 2039
PpuMI	RGGWCCY	1 cut(s)	1404
PscI	ACATGT	1 cut(s)	1279
Psp5II	RGGWCCY	1 cut(s)	1404
Psp6I	CCWGG	9 cut(s)	137, 153, 822, 1114, 1204, 1649, 1779, 1798, 1974
PspEI	GGTNACC	1 cut(s)	1264
PspGI	CCWGG	9 cut(s)	137, 153, 822, 1114, 1204, 1649, 1779, 1798, 1974
PspN4I	GGNNCC	5 cut(s)	124, 143, 1291, 1406, 1938
PspPI	GGNCC	7 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484
PspPPI	RGGWCCY	1 cut(s)	1404
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	2 cut(s)	1570, 1936
PsyI	GACNNNGTC	1 cut(s)	534
PvuII	CAGCTG	2 cut(s)	1577, 1954
RsaI	GTAC	4 cut(s)	352, 520, 1716, 1743
RsaNI	GTAC	4 cut(s)	351, 519, 1715, 1742
RseI	CAYNNNNRTG	2 cut(s)	1685, 1962
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	1110, 1422, 1983, 2025
Sau3AI	GATC	9 cut(s)	331, 474, 1468, 1518, 1570, 1750, 1807, 1936, 2263
Sau96I	GGNCC	7 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484
ScaI	AGTACT	1 cut(s)	1716
SchI	GAGTC	4 cut(s)	761, 1004, 1469, 2039
SduI	GDGCHC	6 cut(s)	82, 125, 581, 1666, 2152, 2213
SfaNI	GCATC	8 cut(s)	242, 619, 884, 1400, 1699, 1783, 1966, 2252
SfcI	CTRYAG	2 cut(s)	431, 1333
SfuI	TTCGAA	2 cut(s)	656, 1380
SinI	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	1685, 1962
SmlI	CTYRAG	2 cut(s)	303, 866
SmoI	CTYRAG	2 cut(s)	303, 866
SphI	GCATGC	1 cut(s)	1862
SsiI	CCGC	4 cut(s)	90, 399, 410, 1482
SspMI	CTAG	3 cut(s)	930, 1718, 2060
StyI	CCWWGG	2 cut(s)	556, 975
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	8 cut(s)	650, 656, 962, 1008, 1380, 2041, 2137, 2194
TatI	WGTACW	3 cut(s)	350, 1714, 1741
TauI	GCSGC	2 cut(s)	93, 413
TfiI	GAWTC	8 cut(s)	451, 506, 647, 671, 1531, 1541, 1598, 1901
Tru1I	TTAA	4 cut(s)	1110, 1422, 1983, 2025
Tru9I	TTAA	4 cut(s)	1110, 1422, 1983, 2025
TscAI	CASTG	3 cut(s)	200, 715, 799
TseFI	GTSAC	1 cut(s)	2075
TseI	GCWGC	8 cut(s)	407, 430, 1074, 1094, 1136, 1344, 1453, 1954
Tsp45I	GTSAC	1 cut(s)	2075
TspDTI	ATGAA	8 cut(s)	33, 305, 623, 1043, 1313, 1526, 1554, 1952
TspGWI	ACGGA	3 cut(s)	528, 749, 1573
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	3 cut(s)	200, 715, 799
Tth111I	GACNNNGTC	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	1121
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
XagI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
XapI	RAATTY	3 cut(s)	611, 905, 1350
XceI	RCATGY	2 cut(s)	1283, 1862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmaI	CCCGGG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	1836
XspI	CTAG	3 cut(s)	930, 1718, 2060
ZrmI	AGTACT	1 cut(s)	1716
Zsp2I	ATGCAT	2 cut(s)	1692, 1860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.