Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

9787898 .. 9809587

Gene Structure 21690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGCTCCTCTGTTCGTCCCTGGGTCCGGGTCTGCCAGGATACTATCAAGAATGGGAAAGCCGGAACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTGCATTGCGGGAAGGAAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAGCAAAGATATGAGTTTGTGAATCTTGGTGGTCCTCAAGTGGATGTTCATGCATTGGTGCTTGATCTTCCTGCTAAGCTTTGTATATCGCGGTCAGTGAAGCGAACGGGACATGAGGGGAACTTGCAAGGCGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGGTAGGATCACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTCGTACATATAGTGGACTCGGTCCGTTGGATACACTTCCTCATGGGACTTTTGGCCAGAAGAGCCCAGGTGCAAAAGTTCAACTTGGTATAATGAAATTCCTAAAGAAAACAGATGCTCCTGCTAATACTGAATCGACTTCGAACAAGGTTCAGGATTCTAATGCTTCTCAAATTACTGGGGGAAAGGATACCAGTGTGAAAGGAACAGGTTTGTTTACGGAAAGTGGTAGTATGGAGTCCAAGAAAGGTAAACGGCCTGTTGTAGGTTCTGCTGGCACTGATGTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCAGATGCTAGACTTGTTTTAGTGGACTTGACACATAAATCGAAGATTTTATCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACCTTGACTCCAACAGGTTCTTCACATTTGTAGGAGATATCACTAAGCTTCATTCAGAAGGAGGTCTTCGCTGCAATGTGATAGCTAATGCTGCTAACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

331

Amino Acids

35.5

Weight (kDa)

9.24

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	23 - 109	1.1e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	241
AciI	CCGC	4 cut(s)	106, 241, 282, 293
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	494, 788
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	4 cut(s)	27, 662, 754, 870
AgsI	TTSAA	2 cut(s)	389, 479
AjnI	CCWGG	4 cut(s)	20, 36, 463, 705
AjuI	GAANNNNNNNTTGG	2 cut(s)	896, 928
AluBI	AGCT	6 cut(s)	74, 229, 290, 881, 940, 977
AluI	AGCT	6 cut(s)	74, 229, 290, 881, 940, 977
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	2 cut(s)	451, 653
ApeKI	GCWGC	4 cut(s)	290, 313, 963, 983
ApoI	RAATTY	2 cut(s)	494, 788
AspS9I	GGNCC	3 cut(s)	25, 182, 419
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	880
AsuII	TTCGAA	1 cut(s)	539
AvaII	GGWCC	3 cut(s)	25, 182, 419
BaeI	ACNNNNGTAYC	2 cut(s)	579, 612
BalI	TGGCCA	1 cut(s)	453
BanII	GRGCYC	2 cut(s)	8, 464
BbsI	GAAGAC	1 cut(s)	950
BbvI	GCAGC	4 cut(s)	277, 300, 950, 970
BccI	CCATC	1 cut(s)	724
BceAI	ACGGC	1 cut(s)	668
BciT130I	CCWGG	4 cut(s)	22, 38, 465, 707
BciVI	GTATCC	3 cut(s)	34, 421, 580
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	688
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	1 cut(s)	314
BfuI	GTATCC	3 cut(s)	34, 421, 580
BisI	GCNGC	5 cut(s)	291, 294, 314, 964, 984
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	5 cut(s)	292, 295, 315, 965, 985
Bme1390I	CCNGG	5 cut(s)	22, 29, 38, 465, 707
Bme18I	GGWCC	3 cut(s)	25, 182, 419
BmgT120I	GGNCC	3 cut(s)	25, 182, 419
BmiI	GGNNCC	2 cut(s)	7, 26
BmrFI	CCNGG	5 cut(s)	22, 29, 38, 465, 707
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	4 cut(s)	125, 502, 767, 805
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	950
BpmI	CTGGAG	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	539
BpuEI	CTTGAG	2 cut(s)	171, 770
BpuMI	CCSGG	1 cut(s)	29
BsaJI	CCNNGG	5 cut(s)	20, 21, 463, 705, 864
BsaXI	ACNNNNNCTCC	4 cut(s)	499, 529, 884, 914
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 662, 754, 870
Bse1I	ACTGG	2 cut(s)	580, 591
Bse3DI	GCAATG	2 cut(s)	101, 973
BseBI	CCWGG	4 cut(s)	22, 38, 465, 707
BseDI	CCNNGG	5 cut(s)	20, 21, 463, 705, 864
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	4 cut(s)	27, 662, 754, 870
BseMI	GCAATG	2 cut(s)	101, 973
BseMII	CTCAG	2 cut(s)	89, 329
BseNI	ACTGG	2 cut(s)	580, 591
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	4 cut(s)	277, 300, 950, 970
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	453, 655
BsiSI	CCGG	2 cut(s)	28, 63
BslFI	GGGAC	3 cut(s)	3, 273, 457
BslI	CCNNNNNNNGG	4 cut(s)	27, 662, 754, 870
BsmAI	GTCTC	1 cut(s)	688
BsmFI	GGGAC	3 cut(s)	3, 273, 457
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	453, 655
Bsp119I	TTCGAA	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	8, 464
Bsp143I	GATC	2 cut(s)	214, 357
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	4 cut(s)	106, 241, 282, 293
BspANI	GGCC	2 cut(s)	453, 655
BspCNI	CTCAG	2 cut(s)	88, 330
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	7, 26
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	1 cut(s)	365
BspQI	GCTCTTC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	539
BsrDI	GCAATG	2 cut(s)	101, 973
BsrI	ACTGG	2 cut(s)	580, 591
BssECI	CCNNGG	5 cut(s)	20, 21, 463, 705, 864
BssMI	GATC	2 cut(s)	214, 357
BssT1I	CCWWGG	1 cut(s)	864
Bst2UI	CCWGG	4 cut(s)	22, 38, 465, 707
Bst6I	CTCTTC	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	4 cut(s)	75, 225, 338, 936
BstENI	CCTNNNNNAGG	3 cut(s)	660, 752, 868
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	217, 360
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	2 cut(s)	214, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 459, 983
BstNI	CCWGG	4 cut(s)	22, 38, 465, 707
BstSCI	CCNGG	5 cut(s)	20, 27, 36, 463, 705
BstSFI	CTRYAG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	4 cut(s)	277, 300, 950, 970
BstV2I	GAAGAC	1 cut(s)	950
BsuI	GTATCC	3 cut(s)	34, 421, 580
BsuRI	GGCC	2 cut(s)	453, 655
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	4 cut(s)	83, 252, 598, 675
Cac8I	GCNNGC	1 cut(s)	673
Cfr13I	GGNCC	3 cut(s)	25, 182, 419
CpoI	CGGWCCG	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	402
CspI	CGGWCCG	1 cut(s)	419
CviAII	CATG	3 cut(s)	200, 263, 440
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	4 cut(s)	75, 225, 338, 936
DpnI	GATC	2 cut(s)	216, 359
DpnII	GATC	2 cut(s)	214, 357
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	864
Eco24I	GRGCYC	2 cut(s)	8, 464
Eco32I	GATATC	1 cut(s)	931
Eco47I	GGWCC	3 cut(s)	25, 182, 419
EcoNI	CCTNNNNNAGG	3 cut(s)	660, 752, 868
EcoRII	CCWGG	4 cut(s)	20, 36, 463, 705
EcoRV	GATATC	1 cut(s)	931
EcoT14I	CCWWGG	1 cut(s)	864
EcoT22I	ATGCAT	1 cut(s)	205
EcoT38I	GRGCYC	2 cut(s)	8, 464
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	3 cut(s)	203, 266, 443
FalI	AAGNNNNNCTT	4 cut(s)	465, 497, 942, 974
FaqI	GGGAC	3 cut(s)	3, 273, 457
FatI	CATG	3 cut(s)	199, 262, 439
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	291, 294, 314, 964, 984
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	2 cut(s)	8, 464
Fsp4HI	GCNGC	5 cut(s)	291, 294, 314, 964, 984
FspBI	CTAG	1 cut(s)	819
GluI	GCNGC	5 cut(s)	291, 294, 314, 964, 984
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	453, 655
HapII	CCGG	2 cut(s)	28, 63
Hin1II	CATG	3 cut(s)	203, 266, 443
HindIII	AAGCTT	3 cut(s)	227, 879, 938
HinfI	GANTC	8 cut(s)	172, 334, 389, 414, 530, 554, 635, 899
HpaII	CCGG	2 cut(s)	28, 63
HphI	GGTGA	1 cut(s)	880
Hpy166II	GTNNAC	4 cut(s)	413, 615, 650, 835
Hpy188I	TCNGA	3 cut(s)	339, 763, 949
Hpy188III	TCNNGA	4 cut(s)	49, 143, 551, 689
Hpy8I	GTNNAC	4 cut(s)	413, 615, 650, 835
HpyAV	CCTTC	4 cut(s)	104, 338, 748, 944
HpyCH4V	TGCA	9 cut(s)	101, 138, 203, 277, 316, 470, 785, 812, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 459, 983
HpyF3I	CTNAG	4 cut(s)	75, 225, 338, 936
Hsp92II	CATG	3 cut(s)	203, 266, 443
Kzo9I	GATC	2 cut(s)	214, 357
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	3 cut(s)	11, 520, 703
Lsp1109I	GCAGC	4 cut(s)	277, 300, 950, 970
LweI	GCATC	4 cut(s)	125, 502, 767, 805
MaeI	CTAG	1 cut(s)	819
MalI	GATC	2 cut(s)	216, 359
MboI	GATC	2 cut(s)	214, 357
MboII	GAAGA	6 cut(s)	209, 331, 469, 865, 904, 950
MhlI	GDGCHC	2 cut(s)	8, 464
MlsI	TGGCCA	1 cut(s)	453
MluCI	AATT	4 cut(s)	326, 494, 570, 788
MluNI	TGGCCA	1 cut(s)	453
MlyI	GAGTC	3 cut(s)	408, 644, 893
MmeI	TCCRAC	2 cut(s)	405, 927
MnlI	CCTC	7 cut(s)	19, 87, 195, 259, 447, 864, 947
Mox20I	TGGCCA	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	453
MspI	CCGG	2 cut(s)	28, 63
MspR9I	CCNGG	5 cut(s)	22, 29, 38, 465, 707
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	4 cut(s)	22, 38, 465, 707
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	98, 459, 983
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	2 cut(s)	214, 357
NlaIII	CATG	3 cut(s)	203, 266, 443
NlaIV	GGNNCC	2 cut(s)	7, 26
NsiI	ATGCAT	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	539
PasI	CCCWGGG	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	452
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	5 cut(s)	172, 334, 389, 530, 554
PflFI	GACNNNGTC	1 cut(s)	417
PkrI	GCNGC	5 cut(s)	292, 295, 315, 965, 985
PleI	GAGTC	3 cut(s)	408, 643, 893
PpsI	GAGTC	3 cut(s)	408, 643, 893
Psp6I	CCWGG	4 cut(s)	20, 36, 463, 705
PspGI	CCWGG	4 cut(s)	20, 36, 463, 705
PspN4I	GGNNCC	2 cut(s)	7, 26
PspPI	GGNCC	3 cut(s)	25, 182, 419
PstI	CTGCAG	1 cut(s)	318
PsyI	GACNNNGTC	1 cut(s)	417
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
Rsr2I	CGGWCCG	1 cut(s)	419
RsrII	CGGWCCG	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	452
SatI	GCNGC	5 cut(s)	291, 294, 314, 964, 984
Sau3AI	GATC	2 cut(s)	214, 357
Sau96I	GGNCC	3 cut(s)	25, 182, 419
SchI	GAGTC	3 cut(s)	408, 644, 893
ScrFI	CCNGG	5 cut(s)	22, 29, 38, 465, 707
SduI	GDGCHC	2 cut(s)	8, 464
SfaNI	GCATC	4 cut(s)	125, 502, 767, 805
SfcI	CTRYAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	3 cut(s)	25, 182, 419
SmlI	CTYRAG	2 cut(s)	186, 749
SmoI	CTYRAG	2 cut(s)	186, 749
Sse9I	AATT	4 cut(s)	326, 494, 570, 788
SsiI	CCGC	4 cut(s)	106, 241, 282, 293
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	5 cut(s)	20, 27, 36, 463, 705
StyI	CCWWGG	1 cut(s)	864
TaqI	TCGA	3 cut(s)	533, 539, 851
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	4 cut(s)	326, 494, 570, 788
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	5 cut(s)	172, 334, 389, 530, 554
TscAI	CASTG	4 cut(s)	83, 252, 598, 682
TseI	GCWGC	4 cut(s)	290, 313, 963, 983
TspDTI	ATGAA	3 cut(s)	188, 506, 932
TspGWI	ACGGA	2 cut(s)	411, 632
TspRI	CASTG	4 cut(s)	83, 252, 598, 682
Tth111I	GACNNNGTC	1 cut(s)	417
VpaK11BI	GGWCC	3 cut(s)	25, 182, 419
XagI	CCTNNNNNAGG	3 cut(s)	660, 752, 868
XapI	RAATTY	2 cut(s)	494, 788
XspI	CTAG	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.