Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Reverse (-)

18757785 .. 18758268

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCCGCAATCTTCAGTGCTGGAGGTCCAGCTTTGGAGGTTCCAACCAAAGAACAGCCCAGTCTGTATCCTGGGAGTGCTGTGGTTGTGCCTGCCTCTCCCTTCAACTTCTCCCTTGTTTAGTAGGGAAGGGTTAACCCATGTCATACATGTTGTTGGACCCAACATGAATCCACACAGACCAAATTGTTTGAACAATGACTATAGTAAAGGCTCAAAGTCACCCAAGGGAAGCGTTAAGAACCTGGAGGCAAAGCTGCCAGAGTCACAAGTTCATTCTGATGGTGCCTCTAGAAATCATTTTGCAAACAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

106

Amino Acids

11.61

Weight (kDa)

9.51

Isoelectric Point (pI)

67.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	105, 193
AjnI	CCWGG	2 cut(s)	69, 243
AluBI	AGCT	2 cut(s)	31, 256
AluI	AGCT	2 cut(s)	31, 256
ApeKI	GCWGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	25, 158
AsuHPI	GGTGA	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	25, 158
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	71, 245
BciVI	GTATCC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	5, 257
BlsI	GCNGC	2 cut(s)	6, 258
Bme1390I	CCNGG	2 cut(s)	71, 245
Bme18I	GGWCC	2 cut(s)	25, 158
BmgT120I	GGNCC	2 cut(s)	25, 158
BmiI	GGNNCC	3 cut(s)	41, 160, 286
BmrFI	CCNGG	2 cut(s)	71, 245
BmrI	ACTGGG	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	53
BpmI	CTGGAG	2 cut(s)	41, 266
BsaJI	CCNNGG	2 cut(s)	70, 225
Bse1I	ACTGG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	71, 245
BseDI	CCNNGG	2 cut(s)	70, 225
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	284
BspACI	CCGC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	314
BspLI	GGNNCC	3 cut(s)	41, 160, 286
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	70, 225
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	71, 245
BstC8I	GCNNGC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	71, 245
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	69, 243
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	92
CciI	TCATGA	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	25, 158
CviAII	CATG	4 cut(s)	140, 149, 166, 315
CviJI	RGCY	4 cut(s)	31, 57, 213, 256
CviKI_1	RGCY	4 cut(s)	31, 57, 213, 256
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	25, 158
EcoRII	CCWGG	2 cut(s)	69, 243
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	4 cut(s)	143, 152, 169, 318
FaiI	YATR	6 cut(s)	141, 146, 150, 167, 204, 316
FatI	CATG	4 cut(s)	139, 148, 165, 314
Fnu4HI	GCNGC	2 cut(s)	5, 257
Fsp4HI	GCNGC	2 cut(s)	5, 257
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	2 cut(s)	5, 257
GsuI	CTGGAG	2 cut(s)	41, 266
Hin1II	CATG	4 cut(s)	143, 152, 169, 318
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	169, 263
HpaI	GTTAAC	1 cut(s)	135
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	2 cut(s)	291, 315
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	2 cut(s)	111, 122
HpyCH4V	TGCA	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	143, 152, 169, 318
KspAI	GTTAAC	1 cut(s)	135
Lsp1109I	GCAGC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	219, 264
MboII	GAAGA	1 cut(s)	3
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	67, 136
MnlI	CCTC	5 cut(s)	16, 30, 105, 241, 298
MseI	TTAA	2 cut(s)	134, 237
MslI	CAYNNNNRTG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	71, 245
MvaI	CCWGG	2 cut(s)	71, 245
NlaIII	CATG	4 cut(s)	143, 152, 169, 318
NlaIV	GGNNCC	3 cut(s)	41, 160, 286
NmuCI	GTSAC	2 cut(s)	219, 264
NspI	RCATGY	1 cut(s)	152
PagI	TCATGA	1 cut(s)	314
PciI	ACATGT	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	6, 258
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PscI	ACATGT	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	69, 243
PspGI	CCWGG	2 cut(s)	69, 243
PspN4I	GGNNCC	3 cut(s)	41, 160, 286
PspPI	GGNCC	2 cut(s)	25, 158
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	134, 237
SatI	GCNGC	2 cut(s)	5, 257
Sau96I	GGNCC	2 cut(s)	25, 158
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	71, 245
SetI	ASST	6 cut(s)	27, 33, 41, 246, 258, 314
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	25, 158
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	69, 243
StyI	CCWWGG	1 cut(s)	225
TasI	AATT	1 cut(s)	184
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	134, 237
Tru9I	TTAA	2 cut(s)	134, 237
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	219, 264
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	219, 264
TspDTI	ATGAA	2 cut(s)	182, 263
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	25, 158
XbaI	TCTAGA	1 cut(s)	290
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.