Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

18228200 .. 18229892

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1110900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTTCGAATCGACTTGGAATCAGGTGTTCTGGGGTTACAAACTTCGATTGTGGCACCTATTATGGATCTTGGTTGCATTATCGGTGAGTGGATCCCTTCTTAAAGGGAGAGAAATTTTTCATTGTGATGGGGACACGAGTGATACATCATCTGTTTTTATGCGAGTGGTGGTCAATTTTATTTTTGAAGTTATTAATTTTTTAACACACATATCCTACTATTTATATAATGACACGTGGTGTACTACCCCGTGTGCCGGTCACATTGAAAAATCTCTCTTAAAAAGGGCCTTTGTTTTTAGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.99

Weight (kDa)

6.95

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AclWI	GGATC	3 cut(s)	74, 87, 100
AcsI	RAATTY	1 cut(s)	114
AcvI	CACGTG	1 cut(s)	237
AdeI	CACNNNGTG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	188, 269
AlwI	GGATC	3 cut(s)	74, 87, 100
AoxI	GGCC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	114
AseI	ATTAAT	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	6
BamHI	GGATCC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	237
BccI	CCATC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	56, 94
Bpu14I	TTCGAA	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	6
Bsp143I	GATC	2 cut(s)	66, 92
BspANI	GGCC	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	56, 94
BspPI	GGATC	3 cut(s)	74, 87, 100
BspT104I	TTCGAA	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	2 cut(s)	66, 92
BssSI	CACGAG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	6
BstKTI	GATC	2 cut(s)	69, 95
BstMBI	GATC	2 cut(s)	66, 92
BstX2I	RGATCY	2 cut(s)	66, 92
BstYI	RGATCY	2 cut(s)	66, 92
BsuRI	GGCC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	243
CviJI	RGCY	2 cut(s)	290, 303
CviKI_1	RGCY	2 cut(s)	290, 303
CviQI	GTAC	1 cut(s)	243
DpnI	GATC	2 cut(s)	68, 94
DpnII	GATC	2 cut(s)	66, 92
DraIII	CACNNNGTG	1 cut(s)	240
Eco72I	CACGTG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	288
FaiI	YATR	5 cut(s)	64, 161, 212, 226, 228
FaqI	GGGAC	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	258
HinfI	GANTC	2 cut(s)	8, 19
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	66, 92
LpnPI	CCDG	3 cut(s)	8, 16, 271
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	35, 260
MalI	GATC	2 cut(s)	68, 94
MboI	GATC	2 cut(s)	66, 92
MflI	RGATCY	2 cut(s)	66, 92
MluCI	AATT	3 cut(s)	114, 175, 196
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	4 cut(s)	102, 195, 203, 281
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	66, 92
NlaIV	GGNNCC	2 cut(s)	56, 94
NmuCI	GTSAC	1 cut(s)	260
NspV	TTCGAA	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	8, 19
PmaCI	CACGTG	1 cut(s)	237
PmlI	CACGTG	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	237
PshBI	ATTAAT	1 cut(s)	195
PspCI	CACGTG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	56, 94
PspPI	GGNCC	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	66, 92
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	4 cut(s)	102, 195, 203, 281
Sau3AI	GATC	2 cut(s)	66, 92
Sau96I	GGNCC	1 cut(s)	288
SetI	ASST	3 cut(s)	27, 60, 239
SfuI	TTCGAA	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	114, 175, 196
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	6, 11, 46
TasI	AATT	3 cut(s)	114, 175, 196
TatI	WGTACW	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	8, 19
Tru1I	TTAA	4 cut(s)	102, 195, 203, 281
Tru9I	TTAA	4 cut(s)	102, 195, 203, 281
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	110
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.