Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

10194331 .. 10197908

Gene Structure 3578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGGACATGGACGTTGATGAACCAACCAAAGGCCAAGAAGAAAAGCAAGGAAAGCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGCGGCAAGTCCACATTCTGCGAACAAGTCATGGGCTCCTCCGTTCGTCCCTGGGTCCGGGTCTGCCAGGATACCATCAAGAATGGGAAAGCCGGTACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTGCATTGAGGGAAGGGAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAGCAAAGAGATGAGTTTGTGAAGCTGGGTGGTCCTCAGGTGGATGTTCATGCTGTGGTGCTTGATCTTCCTGCTAAGCTTTGTATCTCGCGGTCGGTGAAGCGAACTGGCCATGAGGGGAACTTGCAAGGTGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGGTAGGATCACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTCGTACATATAGTGGACTCGGTCCGTTGGATACACTTCCTCATGGGACTTTTGGCCAGAAGAGCCCAGGTGCAAAAGTTCAACTTGGTATAATGAAATTCCTAAAGAAAACAGATGTTCCTACTAATACTGAATCGACTTCGAACAAGGTTCAGGATTCTAATGCTTCTCAAATTACTGGGGGAAAGGATACTGTGAAAGGAACAGGTTTGTTTACTGAAAGTGGTAGTATGGAGTCCAAGAAAGGTGAGCAGCCTGTCGTAGGTTCTGCTGGCACTGACGTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCAAGACTTGTTTTAGTGGACTTGACTCATAAATCGAAGATTTTGTCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACATTGACTCCAAGAGGTTCTTCACATTTGTGGGAGATATCACTAAGCTTCATTCAGAAGGAGGTCTTTGCTGCAATGTGATAGCTAATGCTGCTAACTGGCGACTTAAACCAGGAGGTGGTGGTGTCAATGCTGCAATCTTCAATGCTGGAGGTCCAGCTTTAGAGGTTGCAACCAAAGAACAAGCCAAATCTCTGTATCCTGGGAATGCTGTGGTTGTTCCTCTCCCTTCAACTTCTCCTTTGTTTTGTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAACCCACAGAGACCAAATTATCTTGACAATGACTATAGCAAAGGCTGCAAAATTCTCCATGACACTTATACTTCACTTTTTGAAGGTTTTGCATCAATAGTGAGGACCCAAAAGAAGGTATTTAAGGGAAGCTTTGGAAACCTTCGGTTGAAGCTGCCAGAGTCAAAAGATCACTCTGAGAGTGGGCCTACAAATCACTCTACAAATACCTATCAAAAGATCAAGAGAGAGGATCTTCATGAATCTGAAAGGAACAAACGGAGTAAAGGAGATCAAGCTGAAGCTGAAAACGACTCTGATTCTAATGCTAGTAAATCAAACCTCCACTCTGATGGAAGCAAGAATAAATCCTGGGGAACATGGGCCCAGGCTGTCTACAACATTGCCATGCATCCAGAGAAGCAGAGGGATGTAGTACTAGAGATATCAGATGATGTCGTTGTACTAAATGATCTTTATCCAAAGGCACAAAAGCATCTCCTGGTGGTAGCGCGACATCCTGGTCTTGATCGCTTGGCAGATGTATGCAAAGAACACATTCAGTTGCTAAGGACAATGCATGCGGTTGGTTTGAAGTGGGCTGAAAAGTTCTTACATGATGATTCAACATTGGTCTTTCGTCTTGGATATCACTCGGAACCATCAATGCGACAGCTGCACCTACATGTAATCAGCCAGGATTTTAATTCAGCACATTTGAAGAACAAGAAACATTGGAATTCCTTTAATACTGCTTTCTTTCGAGACTCTGTGGATGTGCTAGAGGAAGTCAGTAGTGACGGAAAGGCAATACTGAATGATGATGAAAGCCTGATGTCTATGGAGTTACGATGTAATCGATGTAGAAGTGCTCACCCCACCATTCCCAAATTGAAATTGCACATTGGCAGATGTCGAGCCTCCTTCCCAAGCACCCTGCTTGAAAATGGTCGGCTGGTAACCGCACCAAGCAATTCTAGCAATGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

755

Amino Acids

82.68

Weight (kDa)

8.76

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	22 - 148	6.9e-13	AAA domain
Macro	PF01661	363 - 444	1.2e-06	Macro domain
DcpS_C	PF11969	556 - 670	5.1e-25	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	566 - 659	6.7e-09	HIT domain
zf-C2HE	PF16278	675 - 727	1.3e-08	C2HE / C2H2 / C2HC zinc-binding finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1797
AatII	GACGTC	1 cut(s)	798
AccB7I	CCANNNNNTGG	1 cut(s)	1118
AccI	GTMKAC	1 cut(s)	1671
AccII	CGCG	2 cut(s)	358, 1789
AciI	CCGC	5 cut(s)	90, 358, 410, 1859, 2238
AclWI	GGATC	3 cut(s)	482, 1536, 2255
AcoI	YGGCCR	2 cut(s)	376, 568
AcsI	RAATTY	4 cut(s)	611, 902, 1347, 2014
AcuI	CTGAAG	1 cut(s)	1596
AcyI	GRCGYC	1 cut(s)	795
AfaI	GTAC	4 cut(s)	184, 520, 1713, 1740
AfiI	CCNNNNNNNGG	8 cut(s)	29, 89, 144, 776, 868, 978, 1118, 1411
AflIII	ACRYGT	2 cut(s)	1276, 1960
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
AleI	CACNNNNGTG	1 cut(s)	1028
Alw21I	GWGCWC	2 cut(s)	82, 2149
Alw26I	GTCTC	3 cut(s)	802, 1300, 2034
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	3 cut(s)	482, 1536, 2255
AoxI	GGCC	5 cut(s)	31, 376, 568, 1481, 1659
ApaI	GGGCCC	1 cut(s)	1663
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	9 cut(s)	407, 430, 766, 1071, 1091, 1133, 1341, 1450, 1951
ApoI	RAATTY	4 cut(s)	611, 902, 1347, 2014
ArsI	GACNNNNNNTTYG	2 cut(s)	953, 985
Asp700I	GAANNNNTTC	1 cut(s)	1833
AspLEI	GCGC	1 cut(s)	1789
AspS9I	GGNCC	9 cut(s)	142, 299, 536, 1154, 1286, 1401, 1481, 1659, 1660
AsuC2I	CCSGG	2 cut(s)	84, 146
AsuHPI	GGTGA	4 cut(s)	376, 773, 988, 2141
AsuII	TTCGAA	1 cut(s)	656
AvaII	GGWCC	6 cut(s)	142, 299, 536, 1154, 1286, 1401
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	82, 1663
BalI	TGGCCA	2 cut(s)	378, 570
BanII	GRGCYC	3 cut(s)	125, 581, 1663
Bbv12I	GWGCWC	2 cut(s)	82, 2149
BbvI	GCAGC	9 cut(s)	394, 417, 778, 1058, 1078, 1120, 1328, 1437, 1938
BccI	CCATC	5 cut(s)	67, 170, 838, 1622, 1945
BciVI	GTATCC	4 cut(s)	151, 538, 697, 1209
BcnI	CCSGG	2 cut(s)	84, 146
BcoDI	GTCTC	3 cut(s)	802, 1300, 2034
BfaI	CTAG	4 cut(s)	1605, 1715, 2057, 2253
BfmI	CTRYAG	2 cut(s)	431, 1330
BfuI	GTATCC	4 cut(s)	151, 538, 697, 1209
BlpI	GCTNAGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	1713
Bme18I	GGWCC	6 cut(s)	142, 299, 536, 1154, 1286, 1401
BmgT120I	GGNCC	9 cut(s)	142, 299, 536, 1154, 1286, 1401, 1481, 1659, 1660
BmiI	GGNNCC	6 cut(s)	124, 143, 1288, 1403, 1661, 1935
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	5 cut(s)	242, 881, 1397, 1696, 1780
BmuI	ACTGGG	1 cut(s)	702
BpmI	CTGGAG	2 cut(s)	281, 1170
Bpu10I	CCTNAGC	1 cut(s)	1844
Bpu1102I	GCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	884
BpuMI	CCSGG	2 cut(s)	84, 146
Bsa29I	ATCGAT	1 cut(s)	2134
BsaBI	GATNNNNATC	1 cut(s)	1752
BsaHI	GRCGYC	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	1300
BsaJI	CCNNGG	8 cut(s)	137, 138, 580, 819, 972, 1202, 1647, 1662
BsaXI	ACNNNNNCTCC	2 cut(s)	992, 1022
Bsc4I	CCNNNNNNNGG	8 cut(s)	29, 89, 144, 776, 868, 978, 1118, 1411
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	3 cut(s)	379, 697, 1103
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	3 cut(s)	1081, 1677, 2263
Bse8I	GATNNNNATC	1 cut(s)	1752
BseCI	ATCGAT	1 cut(s)	2134
BseDI	CCNNGG	8 cut(s)	137, 138, 580, 819, 972, 1202, 1647, 1662
BseGI	GGATG	5 cut(s)	316, 1687, 1711, 1792, 2056
BseJI	GATNNNNATC	1 cut(s)	1752
BseLI	CCNNNNNNNGG	8 cut(s)	29, 89, 144, 776, 868, 978, 1118, 1411
BseMI	GCAATG	3 cut(s)	1081, 1677, 2263
BseMII	CTCAG	4 cut(s)	206, 317, 446, 1464
BseNI	ACTGG	3 cut(s)	379, 697, 1103
BseRI	GAGGAG	2 cut(s)	115, 226
BseSI	GKGCMC	2 cut(s)	82, 1663
BseXI	GCAGC	9 cut(s)	394, 417, 778, 1058, 1078, 1120, 1328, 1437, 1938
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	1937
Bsh1236I	CGCG	2 cut(s)	358, 1789
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	5 cut(s)	33, 378, 570, 1483, 1661
BshVI	ATCGAT	1 cut(s)	2134
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	82, 2149
BsiSI	CCGG	3 cut(s)	84, 145, 180
BslFI	GGGAC	2 cut(s)	120, 574
BslI	CCNNNNNNNGG	8 cut(s)	29, 89, 144, 776, 868, 978, 1118, 1411
BsmAI	GTCTC	3 cut(s)	802, 1300, 2034
BsmBI	CGTCTC	1 cut(s)	802
BsmFI	GGGAC	2 cut(s)	120, 574
BsmI	GAATGC	2 cut(s)	432, 1213
BsnI	GGCC	5 cut(s)	33, 378, 570, 1483, 1661
Bso31I	GGTCTC	1 cut(s)	1300
Bsp119I	TTCGAA	1 cut(s)	656
Bsp120I	GGGCCC	1 cut(s)	1659
Bsp1286I	GDGCHC	5 cut(s)	82, 125, 581, 1663, 2149
Bsp143I	GATC	9 cut(s)	331, 474, 1465, 1515, 1528, 1567, 1747, 1804, 2260
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	5 cut(s)	90, 358, 410, 1859, 2238
BspANI	GGCC	5 cut(s)	33, 378, 570, 1483, 1661
BspCNI	CTCAG	4 cut(s)	205, 316, 447, 1465
BspDI	ATCGAT	1 cut(s)	2134
BspFNI	CGCG	2 cut(s)	358, 1789
BspHI	TCATGA	1 cut(s)	1534
BspLI	GGNNCC	6 cut(s)	124, 143, 1288, 1403, 1661, 1935
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	3 cut(s)	482, 1536, 2255
BspQI	GCTCTTC	1 cut(s)	569
BspT104I	TTCGAA	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	1300
BsrDI	GCAATG	3 cut(s)	1081, 1677, 2263
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	3 cut(s)	379, 697, 1103
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	8 cut(s)	137, 138, 580, 819, 972, 1202, 1647, 1662
BssMI	GATC	9 cut(s)	331, 474, 1465, 1515, 1528, 1567, 1747, 1804, 2260
BssNI	GRCGYC	1 cut(s)	795
BssT1I	CCWWGG	1 cut(s)	972
Bst4CI	ACNGT	1 cut(s)	709
Bst6I	CTCTTC	2 cut(s)	227, 569
BstACI	GRCGYC	1 cut(s)	795
BstAPI	GCANNNNNTGC	1 cut(s)	1341
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	787, 1857
BstDEI	CTNAG	7 cut(s)	192, 303, 342, 455, 1044, 1473, 1844
BstEII	GGTNACC	2 cut(s)	1261, 2233
BstENI	CCTNNNNNAGG	3 cut(s)	774, 866, 976
BstF5I	GGATG	5 cut(s)	316, 1687, 1711, 1792, 2056
BstFNI	CGCG	2 cut(s)	358, 1789
BstHHI	GCGC	1 cut(s)	1789
BstKTI	GATC	9 cut(s)	334, 477, 1468, 1518, 1531, 1570, 1750, 1807, 2263
BstMAI	GTCTC	3 cut(s)	802, 1300, 2034
BstMBI	GATC	9 cut(s)	331, 474, 1465, 1515, 1528, 1567, 1747, 1804, 2260
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 215, 576, 1091, 1341, 1951, 2253
BstNSI	RCATGY	3 cut(s)	1280, 1859, 1964
BstPI	GGTNACC	2 cut(s)	1261, 2233
BstSFI	CTRYAG	2 cut(s)	431, 1330
BstSLI	GKGCMC	2 cut(s)	82, 1663
BstUI	CGCG	2 cut(s)	358, 1789
BstV1I	GCAGC	9 cut(s)	394, 417, 778, 1058, 1078, 1120, 1328, 1437, 1938
BstX2I	RGATCY	1 cut(s)	1528
BstXI	CCANNNNNNTGG	1 cut(s)	1628
BstYI	RGATCY	1 cut(s)	1528
Bsu15I	ATCGAT	1 cut(s)	2134
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	4 cut(s)	151, 538, 697, 1209
BsuRI	GGCC	5 cut(s)	33, 378, 570, 1483, 1661
BsuTUI	ATCGAT	1 cut(s)	2134
BtsCI	GGATG	5 cut(s)	316, 1687, 1711, 1792, 2056
BtsIMutI	CAGTG	2 cut(s)	200, 789
Cac8I	GCNNGC	2 cut(s)	787, 1857
CciI	TCATGA	1 cut(s)	1534
CfoI	GCGC	1 cut(s)	1789
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	9 cut(s)	142, 299, 536, 1154, 1286, 1401, 1481, 1659, 1660
ClaI	ATCGAT	1 cut(s)	2134
CpoI	CGGWCCG	1 cut(s)	536
Csp6I	GTAC	4 cut(s)	183, 519, 1712, 1739
CspI	CGGWCCG	1 cut(s)	536
CviQI	GTAC	4 cut(s)	183, 519, 1712, 1739
DdeI	CTNAG	7 cut(s)	192, 303, 342, 455, 1044, 1473, 1844
DpnI	GATC	9 cut(s)	333, 476, 1467, 1517, 1530, 1569, 1749, 1806, 2262
DpnII	GATC	9 cut(s)	331, 474, 1465, 1515, 1528, 1567, 1747, 1804, 2260
DrdI	GACNNNNNNGTC	1 cut(s)	1797
DseDI	GACNNNNNNGTC	1 cut(s)	1797
EaeI	YGGCCR	2 cut(s)	376, 568
Eam1104I	CTCTTC	2 cut(s)	227, 569
EarI	CTCTTC	2 cut(s)	227, 569
Eco130I	CCWWGG	1 cut(s)	972
Eco24I	GRGCYC	3 cut(s)	125, 581, 1663
Eco31I	GGTCTC	1 cut(s)	1300
Eco32I	GATATC	3 cut(s)	1039, 1722, 1925
Eco47I	GGWCC	6 cut(s)	142, 299, 536, 1154, 1286, 1401
Eco57I	CTGAAG	1 cut(s)	1596
Eco81I	CCTNAGG	1 cut(s)	303
Eco91I	GGTNACC	2 cut(s)	1261, 2233
EcoNI	CCTNNNNNAGG	3 cut(s)	774, 866, 976
EcoO109I	RGGNCCY	1 cut(s)	1401
EcoO65I	GGTNACC	2 cut(s)	1261, 2233
EcoRI	GAATTC	1 cut(s)	2014
EcoRV	GATATC	3 cut(s)	1039, 1722, 1925
EcoT14I	CCWWGG	1 cut(s)	972
EcoT22I	ATGCAT	2 cut(s)	1689, 1857
EcoT38I	GRGCYC	3 cut(s)	125, 581, 1663
ErhI	CCWWGG	1 cut(s)	972
Esp3I	CGTCTC	1 cut(s)	802
FalI	AAGNNNNNCTT	8 cut(s)	582, 614, 1004, 1036, 1050, 1082, 1412, 1444
FaqI	GGGAC	2 cut(s)	120, 574
FblI	GTMKAC	1 cut(s)	1671
FokI	GGATG	5 cut(s)	323, 1674, 1718, 1779, 2063
FriOI	GRGCYC	3 cut(s)	125, 581, 1663
FspBI	CTAG	4 cut(s)	1605, 1715, 2057, 2253
GlaI	GCGC	1 cut(s)	1788
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	2 cut(s)	281, 1170
HaeIII	GGCC	5 cut(s)	33, 378, 570, 1483, 1661
HapII	CCGG	3 cut(s)	84, 145, 180
HhaI	GCGC	1 cut(s)	1789
Hin1I	GRCGYC	1 cut(s)	795
Hin6I	GCGC	1 cut(s)	1787
HinP1I	GCGC	1 cut(s)	1787
HindIII	AAGCTT	4 cut(s)	344, 987, 1046, 1426
HpaII	CCGG	3 cut(s)	84, 145, 180
HphI	GGTGA	4 cut(s)	376, 773, 988, 2141
Hpy166II	GTNNAC	6 cut(s)	80, 99, 530, 729, 943, 1672
Hpy188I	TCNGA	9 cut(s)	456, 877, 1057, 1474, 1543, 1594, 1627, 1726, 1933
Hpy8I	GTNNAC	6 cut(s)	80, 99, 530, 729, 943, 1672
HpyCH4III	ACNGT	1 cut(s)	709
HpyCH4IV	ACGT	2 cut(s)	12, 795
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 215, 576, 1091, 1341, 1951, 2253
HpyF3I	CTNAG	7 cut(s)	192, 303, 342, 455, 1044, 1473, 1844
HpySE526I	ACGT	2 cut(s)	12, 795
Hsp92I	GRCGYC	1 cut(s)	795
HspAI	GCGC	1 cut(s)	1787
Kzo9I	GATC	9 cut(s)	331, 474, 1465, 1515, 1528, 1567, 1747, 1804, 2260
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	2 cut(s)	128, 817
Lsp1109I	GCAGC	9 cut(s)	394, 417, 778, 1058, 1078, 1120, 1328, 1437, 1938
LweI	GCATC	5 cut(s)	242, 881, 1397, 1696, 1780
MaeI	CTAG	4 cut(s)	1605, 1715, 2057, 2253
MaeII	ACGT	2 cut(s)	12, 795
MaeIII	GTNAC	4 cut(s)	1261, 2072, 2121, 2233
MalI	GATC	9 cut(s)	333, 476, 1467, 1517, 1530, 1569, 1749, 1806, 2262
MboI	GATC	9 cut(s)	331, 474, 1465, 1515, 1528, 1567, 1747, 1804, 2260
MflI	RGATCY	1 cut(s)	1528
MhlI	GDGCHC	5 cut(s)	82, 125, 581, 1663, 2149
MlsI	TGGCCA	2 cut(s)	378, 570
MluNI	TGGCCA	2 cut(s)	378, 570
MlyI	GAGTC	7 cut(s)	525, 758, 943, 1001, 1466, 1583, 2036
MmeI	TCCRAC	1 cut(s)	522
Mox20I	TGGCCA	2 cut(s)	378, 570
Mph1103I	ATGCAT	2 cut(s)	1689, 1857
MroXI	GAANNNNTTC	1 cut(s)	1833
MscI	TGGCCA	2 cut(s)	378, 570
MseI	TTAA	4 cut(s)	1107, 1419, 1980, 2022
MslI	CAYNNNNRTG	4 cut(s)	1028, 1626, 1682, 1959
Msp20I	TGGCCA	2 cut(s)	378, 570
MspA1I	CMGCKG	1 cut(s)	1951
MspI	CCGG	3 cut(s)	84, 145, 180
Mva1269I	GAATGC	2 cut(s)	432, 1213
MvnI	CGCG	2 cut(s)	358, 1789
MwoI	GCNNNNNNNGC	7 cut(s)	52, 215, 576, 1091, 1341, 1951, 2253
NciI	CCSGG	2 cut(s)	84, 146
NdeII	GATC	9 cut(s)	331, 474, 1465, 1515, 1528, 1567, 1747, 1804, 2260
NlaIV	GGNNCC	6 cut(s)	124, 143, 1288, 1403, 1661, 1935
NmuCI	GTSAC	1 cut(s)	2072
NsiI	ATGCAT	2 cut(s)	1689, 1857
NspI	RCATGY	3 cut(s)	1280, 1859, 1964
NspV	TTCGAA	1 cut(s)	656
OliI	CACNNNNGTG	1 cut(s)	1028
PaeI	GCATGC	1 cut(s)	1859
PagI	TCATGA	1 cut(s)	1534
PasI	CCCWGGG	1 cut(s)	138
PciI	ACATGT	2 cut(s)	1276, 1960
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	2131
PctI	GAATGC	2 cut(s)	432, 1213
PdmI	GAANNNNTTC	1 cut(s)	1833
PfeI	GAWTC	7 cut(s)	451, 506, 647, 671, 1538, 1595, 1898
PflFI	GACNNNGTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	1118
PleI	GAGTC	7 cut(s)	525, 757, 943, 1001, 1465, 1583, 2036
PpsI	GAGTC	7 cut(s)	525, 757, 943, 1001, 1465, 1583, 2036
PpuMI	RGGWCCY	1 cut(s)	1401
PscI	ACATGT	2 cut(s)	1276, 1960
Psp5II	RGGWCCY	1 cut(s)	1401
PspEI	GGTNACC	2 cut(s)	1261, 2233
PspFI	CCCAGC	1 cut(s)	292
PspN4I	GGNNCC	6 cut(s)	124, 143, 1288, 1403, 1661, 1935
PspOMI	GGGCCC	1 cut(s)	1659
PspPI	GGNCC	9 cut(s)	142, 299, 536, 1154, 1286, 1401, 1481, 1659, 1660
PspPPI	RGGWCCY	1 cut(s)	1401
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	1528
PsyI	GACNNNGTC	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	1951
RsaI	GTAC	4 cut(s)	184, 520, 1713, 1740
RsaNI	GTAC	4 cut(s)	183, 519, 1712, 1739
RseI	CAYNNNNRTG	4 cut(s)	1028, 1626, 1682, 1959
Rsr2I	CGGWCCG	1 cut(s)	536
RsrII	CGGWCCG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	1107, 1419, 1980, 2022
Sau3AI	GATC	9 cut(s)	331, 474, 1465, 1515, 1528, 1567, 1747, 1804, 2260
Sau96I	GGNCC	9 cut(s)	142, 299, 536, 1154, 1286, 1401, 1481, 1659, 1660
ScaI	AGTACT	1 cut(s)	1713
SchI	GAGTC	7 cut(s)	525, 758, 943, 1001, 1466, 1583, 2036
SduI	GDGCHC	5 cut(s)	82, 125, 581, 1663, 2149
SfaNI	GCATC	5 cut(s)	242, 881, 1397, 1696, 1780
SfcI	CTRYAG	2 cut(s)	431, 1330
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	6 cut(s)	142, 299, 536, 1154, 1286, 1401
SmiMI	CAYNNNNRTG	4 cut(s)	1028, 1626, 1682, 1959
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
SphI	GCATGC	1 cut(s)	1859
SsiI	CCGC	5 cut(s)	90, 358, 410, 1859, 2238
SspMI	CTAG	4 cut(s)	1605, 1715, 2057, 2253
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	1 cut(s)	709
TaiI	ACGT	2 cut(s)	15, 798
TaqI	TCGA	6 cut(s)	650, 656, 959, 2038, 2134, 2191
TaqII	GACCGA	1 cut(s)	524
TatI	WGTACW	2 cut(s)	1711, 1738
TauI	GCSGC	2 cut(s)	93, 413
TfiI	GAWTC	7 cut(s)	451, 506, 647, 671, 1538, 1595, 1898
Tru1I	TTAA	4 cut(s)	1107, 1419, 1980, 2022
Tru9I	TTAA	4 cut(s)	1107, 1419, 1980, 2022
TscAI	CASTG	2 cut(s)	200, 796
TseFI	GTSAC	1 cut(s)	2072
TseI	GCWGC	9 cut(s)	407, 430, 766, 1071, 1091, 1133, 1341, 1450, 1951
Tsp45I	GTSAC	1 cut(s)	2072
TspDTI	ATGAA	8 cut(s)	33, 305, 623, 1040, 1310, 1523, 1551, 2115
TspGWI	ACGGA	4 cut(s)	118, 528, 1570, 2091
TspRI	CASTG	2 cut(s)	200, 796
Tth111I	GACNNNGTC	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	1118
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	6 cut(s)	142, 299, 536, 1154, 1286, 1401
XagI	CCTNNNNNAGG	3 cut(s)	774, 866, 976
XapI	RAATTY	4 cut(s)	611, 902, 1347, 2014
XceI	RCATGY	3 cut(s)	1280, 1859, 1964
XmiI	GTMKAC	1 cut(s)	1671
XmnI	GAANNNNTTC	1 cut(s)	1833
XspI	CTAG	4 cut(s)	1605, 1715, 2057, 2253
ZraI	GACGTC	1 cut(s)	796
ZrmI	AGTACT	1 cut(s)	1713
Zsp2I	ATGCAT	2 cut(s)	1689, 1857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.