Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Reverse (-)

39753327 .. 39756968

Gene Structure 3642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGGACATGGATGTTGATGAACCAAACAAAGGCGAAGAAGAAAAGCAAGGAAATCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGCGGCAAGTCCACATTCTGCGAACAAGTCATGGACTCCTCTCTTCGTCCCTGGGTCCGGGTCTGCCAGGATACTATCAAGAATGGTAAAGCCGGAACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTACATTGAGGGAAGGGAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAGCAAAGAGATGAGTTTGTGAAGCTTGGTGGTCCTCAGGTGGATGTTCATGCTGTGGTGCTTGATCTTCCTGCTAAGCTTTGTATCTCGCGGTCGGTGAAGCGAACTGGCCATGAGGGAAACTTGCAAGGCGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGGTAGGATAACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTCGTACATATAGTGGACTCGGTCCGTTGGATACACTTCCCCATGGCACTTTTGGCCAGAAGAGCCCGGGTGCAAAAGTTCAACTTGGTATAATGAAATTCCTAAAGAAAACAGATGCTCCTGCTAATACTGAATCGACTTCGAACAAGGTTCAGGATTCTAATGCTTCACAAATTACTGGGGGAAAGGATACCAGTGTGAAAGGAACAGGTTTGTTTACTGAAAGTGGTCGTATGGAGTCCAAGAAAGGTGAACAGCCTGTCGTAGGTTCTGCTGGCACTGATGTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCTAGACTTGTTTTAGTGGACTTGACACATAAATCGAAGATTTTGTCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACATCGACTCCAACAGGTTCTTCACATTTGTAGGAGATATCACTAAGCTTCATTCAGAACGGGGTCTTCGCTGCAATGTGATAGCTAATGCTGCTAACTGGCGACTTAAACCAGGAGTTGGTGGTGTCAATGCTGCAATCTTCAATGCTGGAGGTCCAGCTTTAGAGGTTGCAACCAAAGAACAAGCCAAATCTCTGTATCCTGGGAATGCTGTGGTTGTTCCTCTCCCTTCAACTTCTCCCTTGTTTTGTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAACCCACAGAGACCAAATTATCTTGACAATGACTATAGCAAAGGCTGCAAAATTCTCCATGACACTTATACTTCACTTTTCGAAGGTTTTGCATCAATAGTGAGGACCCAAAAGAATGTATTTAAGGGAAGCTTTGGAAACCTTCGGCTGAAGCTGCCAGAGTCAGAAGATCACTCTGAGAGTGGGACTAGAAATCACTCTACAAATACGTATCAAAAGATCAAGAGAGAGGATCTTCATGAATCTGAAAGGAACAAACGGAGTAAAGGAGATCAAGCTGAAGCTGAAAATGTCTCTGATTCTAATGCTGGTAAATCAAACCTCCAGTCTGATGGAAGCAAGAATAAATCCTGGGGAACATGGGCTCAGGTTCTCTACAACACTGCCATGCATCCGGAGAAGCAGAGGGATGTAGTACTAGAGATATCAGATGATGTCGTTGTACTAAATGATCTTTATCCAAAGGCGCAAAAGCATCTCCTGGTGGTAGTGCGACATCCTGGTCTTGATCGCTTGGCAGATGTCTGCAAAGAACACATTCAGTTGCTAAGGACAATGCATGCGGTTGGTTTGAAGTGGGCTGAAAAGTTCTTACATGATGATTCAACATTGGTCTTTCGTCTTGGATATCACTCGGAACCATCAATGCGACAGCTGCACCTACATGTAATCAGCCAGGATTTTAATTCAGCACATTTGAAGAACAAGAAACATTGGAACTCCTTTAATACTGCATTCTTTCGAGACTCTGTGGATGTGCTAGAGGAAGTCAGTAGTGACGGAAAGGCAATACTGAATGATGATGAGAGCCTGATGTCTATGGAGTTACGATGTAATCGATGTAGAAGTGCTCACCCCACCATTCCCAAATTGAAATTGCACATTGGCAGATGTCGAGCCTCCTTCCCGAGCACCCTGCTTGAAAATGGTCGGCTGGTAACTGCACCAAGCAATTTCAGCAGTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

757

Amino Acids

83.15

Weight (kDa)

8.66

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	22 - 148	1.6e-12	AAA domain
DcpS_C	PF11969	559 - 671	2e-24	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	567 - 660	1e-08	HIT domain
zf-C2HE	PF16278	676 - 728	1.3e-08	C2HE / C2H2 / C2HC zinc-binding finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1800
AccB7I	CCANNNNNTGG	1 cut(s)	1121
AccII	CGCG	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	1693
AciI	CCGC	5 cut(s)	90, 358, 399, 410, 1862
AclWI	GGATC	2 cut(s)	1539, 2258
AcoI	YGGCCR	2 cut(s)	376, 568
AcsI	RAATTY	3 cut(s)	611, 905, 1350
AcuI	CTGAAG	2 cut(s)	1469, 1599
AfaI	GTAC	4 cut(s)	217, 520, 1716, 1743
AfiI	CCNNNNNNNGG	7 cut(s)	29, 89, 144, 779, 871, 981, 1121
AflIII	ACRYGT	2 cut(s)	1279, 1963
AgsI	TTSAA	9 cut(s)	506, 596, 1147, 1236, 1873, 1905, 1999, 2173, 2222
AjnI	CCWGG	9 cut(s)	137, 153, 822, 1114, 1204, 1649, 1779, 1798, 1974
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
Alw21I	GWGCWC	3 cut(s)	82, 2152, 2213
Alw26I	GTCTC	4 cut(s)	805, 1303, 1597, 2037
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	1539, 2258
Ama87I	CYCGRG	2 cut(s)	580, 2206
Aor13HI	TCCGGA	1 cut(s)	1693
AoxI	GGCC	2 cut(s)	376, 568
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	8 cut(s)	407, 430, 1074, 1094, 1136, 1344, 1453, 1954
ApoI	RAATTY	3 cut(s)	611, 905, 1350
ArsI	GACNNNNNNTTYG	4 cut(s)	956, 988, 1610, 1642
Asp700I	GAANNNNTTC	1 cut(s)	1836
AspLEI	GCGC	1 cut(s)	1768
AspS9I	GGNCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
AsuC2I	CCSGG	4 cut(s)	84, 146, 581, 582
AsuHPI	GGTGA	4 cut(s)	376, 776, 991, 2144
AsuII	TTCGAA	2 cut(s)	656, 1380
AvaI	CYCGRG	2 cut(s)	580, 2206
AvaII	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	82
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	2 cut(s)	378, 570
BanII	GRGCYC	2 cut(s)	581, 1666
BbsI	GAAGAC	1 cut(s)	1061
Bbv12I	GWGCWC	3 cut(s)	82, 2152, 2213
BbvI	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
BccI	CCATC	4 cut(s)	67, 841, 1625, 1948
BcgI	CGANNNNNNTGC	4 cut(s)	1370, 1404, 2197, 2231
BciT130I	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
BciVI	GTATCC	4 cut(s)	151, 538, 697, 1212
BcnI	CCSGG	4 cut(s)	84, 146, 581, 582
BcoDI	GTCTC	4 cut(s)	805, 1303, 1597, 2037
BfaI	CTAG	4 cut(s)	930, 1488, 1718, 2060
BfmI	CTRYAG	2 cut(s)	431, 1333
BfuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BlpI	GCTNAGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	1716
Bme18I	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
BmeT110I	CYCGRG	2 cut(s)	580, 2206
BmgT120I	GGNCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
BmiI	GGNNCC	4 cut(s)	143, 1291, 1406, 1938
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
BmuI	ACTGGG	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	1061
BpmI	CTGGAG	3 cut(s)	281, 1173, 1607
Bpu10I	CCTNAGC	2 cut(s)	1665, 1847
Bpu1102I	GCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	2 cut(s)	656, 1380
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	4 cut(s)	84, 146, 581, 582
Bsa29I	ATCGAT	1 cut(s)	2137
BsaAI	YACGTR	1 cut(s)	1509
BsaBI	GATNNNNATC	1 cut(s)	1755
BsaI	GGTCTC	1 cut(s)	1303
BsaJI	CCNNGG	8 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650
BsaWI	WCCGGW	1 cut(s)	1693
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 995, 1025
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 89, 144, 779, 871, 981, 1121
Bse1I	ACTGG	5 cut(s)	379, 697, 708, 1106, 1624
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	1084
Bse8I	GATNNNNATC	1 cut(s)	1755
BseAI	TCCGGA	1 cut(s)	1693
BseBI	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
BseCI	ATCGAT	1 cut(s)	2137
BseDI	CCNNGG	8 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650
BseGI	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BseJI	GATNNNNATC	1 cut(s)	1755
BseLI	CCNNNNNNNGG	7 cut(s)	29, 89, 144, 779, 871, 981, 1121
BseMI	GCAATG	1 cut(s)	1084
BseMII	CTCAG	5 cut(s)	206, 317, 446, 1467, 1679
BseNI	ACTGG	5 cut(s)	379, 697, 708, 1106, 1624
BseRI	GAGGAG	2 cut(s)	115, 226
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
BsgI	GTGCAG	2 cut(s)	1940, 2226
Bsh1236I	CGCG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	378, 570
BshVI	ATCGAT	1 cut(s)	2137
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	3 cut(s)	82, 2152, 2213
BsiHKCI	CYCGRG	2 cut(s)	580, 2206
BsiSI	CCGG	5 cut(s)	84, 145, 180, 581, 1694
BslFI	GGGAC	2 cut(s)	120, 1498
BslI	CCNNNNNNNGG	7 cut(s)	29, 89, 144, 779, 871, 981, 1121
BsmAI	GTCTC	4 cut(s)	805, 1303, 1597, 2037
BsmFI	GGGAC	2 cut(s)	120, 1498
BsmI	GAATGC	3 cut(s)	432, 1216, 2033
BsnI	GGCC	2 cut(s)	378, 570
Bso31I	GGTCTC	1 cut(s)	1303
BsoBI	CYCGRG	2 cut(s)	580, 2206
Bsp119I	TTCGAA	2 cut(s)	656, 1380
Bsp1286I	GDGCHC	5 cut(s)	82, 581, 1666, 2152, 2213
Bsp13I	TCCGGA	1 cut(s)	1693
Bsp143I	GATC	8 cut(s)	331, 1468, 1518, 1531, 1570, 1750, 1807, 2263
Bsp1720I	GCTNAGC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	5 cut(s)	90, 358, 399, 410, 1862
BspANI	GGCC	2 cut(s)	378, 570
BspCNI	CTCAG	5 cut(s)	205, 316, 447, 1468, 1678
BspDI	ATCGAT	1 cut(s)	2137
BspEI	TCCGGA	1 cut(s)	1693
BspFNI	CGCG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	1537
BspLI	GGNNCC	4 cut(s)	143, 1291, 1406, 1938
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	2 cut(s)	1539, 2258
BspQI	GCTCTTC	1 cut(s)	569
BspT104I	TTCGAA	2 cut(s)	656, 1380
BspTNI	GGTCTC	1 cut(s)	1303
BsrDI	GCAATG	1 cut(s)	1084
BsrI	ACTGG	5 cut(s)	379, 697, 708, 1106, 1624
BssECI	CCNNGG	8 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650
BssMI	GATC	8 cut(s)	331, 1468, 1518, 1531, 1570, 1750, 1807, 2263
BssT1I	CCWWGG	2 cut(s)	556, 975
Bst2UI	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
Bst6I	CTCTTC	3 cut(s)	135, 227, 569
BstAPI	GCANNNNNTGC	1 cut(s)	1344
BstBAI	YACGTR	1 cut(s)	1509
BstBI	TTCGAA	2 cut(s)	656, 1380
BstC8I	GCNNGC	2 cut(s)	790, 1860
BstDEI	CTNAG	8 cut(s)	192, 303, 342, 455, 1047, 1476, 1665, 1847
BstDSI	CCRYGG	1 cut(s)	556
BstEII	GGTNACC	1 cut(s)	1264
BstENI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
BstF5I	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BstFNI	CGCG	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	1768
BstKTI	GATC	8 cut(s)	334, 1471, 1521, 1534, 1573, 1753, 1810, 2266
BstMAI	GTCTC	4 cut(s)	805, 1303, 1597, 2037
BstMBI	GATC	8 cut(s)	331, 1468, 1518, 1531, 1570, 1750, 1807, 2263
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	7 cut(s)	567, 576, 1094, 1344, 1453, 1954, 2256
BstNI	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
BstNSI	RCATGY	3 cut(s)	1283, 1862, 1967
BstPI	GGTNACC	1 cut(s)	1264
BstSFI	CTRYAG	2 cut(s)	431, 1333
BstSLI	GKGCMC	1 cut(s)	82
BstSNI	TACGTA	1 cut(s)	1509
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
BstV2I	GAAGAC	1 cut(s)	1061
BstX2I	RGATCY	1 cut(s)	1531
BstXI	CCANNNNNNTGG	1 cut(s)	1631
BstYI	RGATCY	1 cut(s)	1531
Bsu15I	ATCGAT	1 cut(s)	2137
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BsuRI	GGCC	2 cut(s)	378, 570
BsuTUI	ATCGAT	1 cut(s)	2137
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BtsI	GCAGTG	2 cut(s)	1680, 2266
BtsIMutI	CAGTG	5 cut(s)	200, 715, 792, 1680, 2266
Cac8I	GCNNGC	2 cut(s)	790, 1860
CciI	TCATGA	1 cut(s)	1537
CfoI	GCGC	1 cut(s)	1768
Cfr13I	GGNCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
Cfr9I	CCCGGG	1 cut(s)	580
ClaI	ATCGAT	1 cut(s)	2137
CpoI	CGGWCCG	1 cut(s)	536
Csp6I	GTAC	4 cut(s)	216, 519, 1715, 1742
CspI	CGGWCCG	1 cut(s)	536
CviQI	GTAC	4 cut(s)	216, 519, 1715, 1742
DdeI	CTNAG	8 cut(s)	192, 303, 342, 455, 1047, 1476, 1665, 1847
DpnI	GATC	8 cut(s)	333, 1470, 1520, 1533, 1572, 1752, 1809, 2265
DpnII	GATC	8 cut(s)	331, 1468, 1518, 1531, 1570, 1750, 1807, 2263
DrdI	GACNNNNNNGTC	1 cut(s)	1800
DseDI	GACNNNNNNGTC	1 cut(s)	1800
EaeI	YGGCCR	2 cut(s)	376, 568
Eam1104I	CTCTTC	3 cut(s)	135, 227, 569
EarI	CTCTTC	3 cut(s)	135, 227, 569
EciI	GGCGGA	1 cut(s)	414
Eco105I	TACGTA	1 cut(s)	1509
Eco130I	CCWWGG	2 cut(s)	556, 975
Eco24I	GRGCYC	2 cut(s)	581, 1666
Eco31I	GGTCTC	1 cut(s)	1303
Eco32I	GATATC	3 cut(s)	1042, 1725, 1928
Eco47I	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
Eco57I	CTGAAG	2 cut(s)	1469, 1599
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	2 cut(s)	580, 2206
Eco91I	GGTNACC	1 cut(s)	1264
EcoNI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
EcoO109I	RGGNCCY	1 cut(s)	1404
EcoO65I	GGTNACC	1 cut(s)	1264
EcoRII	CCWGG	9 cut(s)	137, 153, 822, 1114, 1204, 1649, 1779, 1798, 1974
EcoRV	GATATC	3 cut(s)	1042, 1725, 1928
EcoT14I	CCWWGG	2 cut(s)	556, 975
EcoT22I	ATGCAT	2 cut(s)	1692, 1860
EcoT38I	GRGCYC	2 cut(s)	581, 1666
ErhI	CCWWGG	2 cut(s)	556, 975
FalI	AAGNNNNNCTT	4 cut(s)	582, 614, 1415, 1447
FaqI	GGGAC	2 cut(s)	120, 1498
FokI	GGATG	6 cut(s)	23, 323, 1677, 1721, 1782, 2066
FriOI	GRGCYC	2 cut(s)	581, 1666
FspBI	CTAG	4 cut(s)	930, 1488, 1718, 2060
GlaI	GCGC	1 cut(s)	1767
GsuI	CTGGAG	3 cut(s)	281, 1173, 1607
HaeIII	GGCC	2 cut(s)	378, 570
HapII	CCGG	5 cut(s)	84, 145, 180, 581, 1694
HhaI	GCGC	1 cut(s)	1768
Hin6I	GCGC	1 cut(s)	1766
HinP1I	GCGC	1 cut(s)	1766
HindIII	AAGCTT	5 cut(s)	290, 344, 990, 1049, 1429
HpaII	CCGG	5 cut(s)	84, 145, 180, 581, 1694
HphI	GGTGA	4 cut(s)	376, 776, 991, 2144
Hpy166II	GTNNAC	6 cut(s)	80, 99, 530, 732, 767, 946
Hpy8I	GTNNAC	6 cut(s)	80, 99, 530, 732, 767, 946
HpyAV	CCTTC	8 cut(s)	221, 455, 865, 1242, 1253, 1376, 1451, 2212
HpyCH4IV	ACGT	1 cut(s)	1508
HpyF10VI	GCNNNNNNNGC	7 cut(s)	567, 576, 1094, 1344, 1453, 1954, 2256
HpyF3I	CTNAG	8 cut(s)	192, 303, 342, 455, 1047, 1476, 1665, 1847
HpySE526I	ACGT	1 cut(s)	1508
HspAI	GCGC	1 cut(s)	1766
Kpn2I	TCCGGA	1 cut(s)	1693
Kzo9I	GATC	8 cut(s)	331, 1468, 1518, 1531, 1570, 1750, 1807, 2263
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	2 cut(s)	637, 820
Lsp1109I	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
LweI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
MaeI	CTAG	4 cut(s)	930, 1488, 1718, 2060
MaeII	ACGT	1 cut(s)	1508
MaeIII	GTNAC	4 cut(s)	1264, 2075, 2124, 2236
MalI	GATC	8 cut(s)	333, 1470, 1520, 1533, 1572, 1752, 1809, 2265
MboI	GATC	8 cut(s)	331, 1468, 1518, 1531, 1570, 1750, 1807, 2263
MflI	RGATCY	1 cut(s)	1531
MhlI	GDGCHC	5 cut(s)	82, 581, 1666, 2152, 2213
MlsI	TGGCCA	2 cut(s)	378, 570
MluNI	TGGCCA	2 cut(s)	378, 570
MlyI	GAGTC	6 cut(s)	116, 525, 761, 1004, 1469, 2039
MmeI	TCCRAC	2 cut(s)	522, 1038
Mox20I	TGGCCA	2 cut(s)	378, 570
Mph1103I	ATGCAT	2 cut(s)	1692, 1860
MroI	TCCGGA	1 cut(s)	1693
MroXI	GAANNNNTTC	1 cut(s)	1836
MscI	TGGCCA	2 cut(s)	378, 570
MseI	TTAA	4 cut(s)	1110, 1422, 1983, 2025
MslI	CAYNNNNRTG	2 cut(s)	1685, 1962
Msp20I	TGGCCA	2 cut(s)	378, 570
MspA1I	CMGCKG	1 cut(s)	1954
MspI	CCGG	5 cut(s)	84, 145, 180, 581, 1694
Mva1269I	GAATGC	3 cut(s)	432, 1216, 2033
MvaI	CCWGG	9 cut(s)	139, 155, 824, 1116, 1206, 1651, 1781, 1800, 1976
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	7 cut(s)	567, 576, 1094, 1344, 1453, 1954, 2256
NciI	CCSGG	4 cut(s)	84, 146, 581, 582
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	8 cut(s)	331, 1468, 1518, 1531, 1570, 1750, 1807, 2263
NlaIV	GGNNCC	4 cut(s)	143, 1291, 1406, 1938
NmuCI	GTSAC	1 cut(s)	2075
NsiI	ATGCAT	2 cut(s)	1692, 1860
NspI	RCATGY	3 cut(s)	1283, 1862, 1967
NspV	TTCGAA	2 cut(s)	656, 1380
PaeI	GCATGC	1 cut(s)	1862
PagI	TCATGA	1 cut(s)	1537
PasI	CCCWGGG	1 cut(s)	138
PciI	ACATGT	2 cut(s)	1279, 1963
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	2134
PctI	GAATGC	3 cut(s)	432, 1216, 2033
PdmI	GAANNNNTTC	1 cut(s)	1836
PfeI	GAWTC	7 cut(s)	451, 506, 647, 671, 1541, 1598, 1901
PflFI	GACNNNGTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	1121
PleI	GAGTC	6 cut(s)	116, 525, 760, 1004, 1468, 2039
PpsI	GAGTC	6 cut(s)	116, 525, 760, 1004, 1468, 2039
Ppu21I	YACGTR	1 cut(s)	1509
PpuMI	RGGWCCY	1 cut(s)	1404
PscI	ACATGT	2 cut(s)	1279, 1963
Psp5II	RGGWCCY	1 cut(s)	1404
Psp6I	CCWGG	9 cut(s)	137, 153, 822, 1114, 1204, 1649, 1779, 1798, 1974
PspEI	GGTNACC	1 cut(s)	1264
PspGI	CCWGG	9 cut(s)	137, 153, 822, 1114, 1204, 1649, 1779, 1798, 1974
PspN4I	GGNNCC	4 cut(s)	143, 1291, 1406, 1938
PspPI	GGNCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
PspPPI	RGGWCCY	1 cut(s)	1404
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	1531
PsyI	GACNNNGTC	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	1954
RsaI	GTAC	4 cut(s)	217, 520, 1716, 1743
RsaNI	GTAC	4 cut(s)	216, 519, 1715, 1742
RseI	CAYNNNNRTG	2 cut(s)	1685, 1962
Rsr2I	CGGWCCG	1 cut(s)	536
RsrII	CGGWCCG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	1110, 1422, 1983, 2025
Sau3AI	GATC	8 cut(s)	331, 1468, 1518, 1531, 1570, 1750, 1807, 2263
Sau96I	GGNCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
ScaI	AGTACT	1 cut(s)	1716
SchI	GAGTC	6 cut(s)	116, 525, 761, 1004, 1469, 2039
SduI	GDGCHC	5 cut(s)	82, 581, 1666, 2152, 2213
SfaNI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
SfcI	CTRYAG	2 cut(s)	431, 1333
SfuI	TTCGAA	2 cut(s)	656, 1380
SinI	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	1685, 1962
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SnaBI	TACGTA	1 cut(s)	1509
SphI	GCATGC	1 cut(s)	1862
SsiI	CCGC	5 cut(s)	90, 358, 399, 410, 1862
SspMI	CTAG	4 cut(s)	930, 1488, 1718, 2060
StyI	CCWWGG	2 cut(s)	556, 975
TaiI	ACGT	1 cut(s)	1511
TaqI	TCGA	8 cut(s)	650, 656, 962, 1008, 1380, 2041, 2137, 2194
TaqII	GACCGA	1 cut(s)	524
TatI	WGTACW	3 cut(s)	215, 1714, 1741
TauI	GCSGC	2 cut(s)	93, 413
TfiI	GAWTC	7 cut(s)	451, 506, 647, 671, 1541, 1598, 1901
Tru1I	TTAA	4 cut(s)	1110, 1422, 1983, 2025
Tru9I	TTAA	4 cut(s)	1110, 1422, 1983, 2025
TscAI	CASTG	5 cut(s)	200, 715, 799, 1687, 2266
TseFI	GTSAC	1 cut(s)	2075
TseI	GCWGC	8 cut(s)	407, 430, 1074, 1094, 1136, 1344, 1453, 1954
Tsp45I	GTSAC	1 cut(s)	2075
TspDTI	ATGAA	7 cut(s)	33, 305, 623, 1043, 1313, 1526, 1554
TspGWI	ACGGA	3 cut(s)	528, 1573, 2094
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	5 cut(s)	200, 715, 799, 1687, 2266
Tth111I	GACNNNGTC	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	1121
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
XagI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
XapI	RAATTY	3 cut(s)	611, 905, 1350
XceI	RCATGY	3 cut(s)	1283, 1862, 1967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmaI	CCCGGG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	1836
XspI	CTAG	4 cut(s)	930, 1488, 1718, 2060
ZrmI	AGTACT	1 cut(s)	1716
Zsp2I	ATGCAT	2 cut(s)	1692, 1860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.