Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

9862299 .. 9883399

Gene Structure 21101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGGACATGGATGTTGATGAACCAACCAAAGAAGAAAAGCAAGGAAAGCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGCGGCAAGTCCACATTCTGCGAACAAGTCATGGGCTCCTCCGTTCGTCCCTGGGTCCGGGTCTGCCAGGATACCATCAAGAATGGGAAAGCCGGTACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTGCATTGAGGGAAGGGAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAGCAAAGAGATGAGTTTGTGAAGCTGGGTGGTCCTCAGGTGGATGTTCATGCTGTGGTGCTTGATCTTCCTGCTAAGCTTTGTATCTCGCGGTCGGTGAAGCGAACTGGCCATGAGGGGAACTTGCAAGGTGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGGTAGGATCACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTCGTACATATAGTGGACTCGGTCCGTTGGATACACTTCCTCATGGGACTTTTGGCCAGAAGAGCCCAGGTGCAAAAGTTCAACTTGGTATAATGAAATTCCTAAAGAAAACAGATGTTCCTACTAATACTGAATCGACTTCGAACAAGGTTCAGGATTCTAATGCTTCTCAAATTACTGGGGGAAAGGATACTGTGAAAGGAACAGGTTTGTTTACTGAAAGTGGTAGTATGGAGTCCAAGAAAGGTGAGCAGCCTGTCGTAGGTTCTGCTGGCACTGACGTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCAAGACTTGTTTTAGTGGACTTGACTCATAAATCGAAGATTTTGTCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACATTGACTCCAAGAGGTTCTTCACATTTGTGGGAGATATCACTAAGCTTCATTCAGAAGGAGGTCTTTGCTGCAATGTGATAGCTAATGCTGCTAACTGGCGACTTAAACCAGGAGGTGGTGGTGTCAATGCTGCAATCTTCAATGCTGGAGGTCCAGCTTTAGAGGTTGCAACCAAAGAACAAGCCAAATCTCTGTATCCTGGGAATGCTGTGGTTGTTCCTCTCCCTTCAACTTCTCCTTTGTTTTGTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAACCCACAGAGACCAAATTATCTTGACAATGACTATAGCAAAGGCTGCAAAATTCTCCATGACACTTATACTTCACTTTTTGAAGGTTTTGCATCAATAGTGAGGACCCAAAAGAAGGTATTTAAGGGAAGCTTTGGAAACCTTCGGTTGAAGCTGCCAGAGTCAAAAGATCACTCTGAGAGTGGGCCTACAAATCACTCTACAAATACCTATCAAAAGATCAAGAGAGAGGATCTTCATGAATCTGAAAGGAACAAACGGAGTAAAGGAGATCAAGCTGAAGCTGAAAACGACTCTGATTCTAATGCTAGTAAATCAAACCTCCACTCTGATGGAAGCAAGAATAAATCCTGGGGAACATGGGCCCAGGCTGTCTACAACATTGCCATGCATCCAGAGAAGCAGAGGGATGTAGTACTAGAGATATCAGATGATGTCGTTGTACTAAATGATCTTTATCCAAAGGCACAAAAGCATCTCCTGGTGGTAGCGCGACATCCTGGTCTTGATCGCTTGGCAGATGTATGCAAAGAACACATTCAGTTGCTAAGGACAATGCATGCGGTTGGTTTGAAGTGGGCTGAAAAGTTCTTACATGATGATTCAACATTGGTCTTTCGTCTTGGATATCACTCGGTACACATGCTCACTTTTGCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

650

Amino Acids

70.96

Weight (kDa)

8.79

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	20 - 146	5.4e-13	AAA domain
Macro	PF01661	361 - 442	9.5e-07	Macro domain
DcpS_C	PF11969	554 - 642	1e-14	Scavenger mRNA decapping enzyme C-term binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1791
AatII	GACGTC	1 cut(s)	792
AccB7I	CCANNNNNTGG	1 cut(s)	1112
AccI	GTMKAC	1 cut(s)	1665
AccII	CGCG	2 cut(s)	352, 1783
AciI	CCGC	4 cut(s)	84, 352, 404, 1853
AclWI	GGATC	2 cut(s)	476, 1530
AcoI	YGGCCR	2 cut(s)	370, 562
AcsI	RAATTY	3 cut(s)	605, 896, 1341
AcuI	CTGAAG	1 cut(s)	1590
AcyI	GRCGYC	1 cut(s)	789
AfaI	GTAC	5 cut(s)	178, 514, 1707, 1734, 1929
AfiI	CCNNNNNNNGG	7 cut(s)	83, 138, 770, 862, 972, 1112, 1405
AflIII	ACRYGT	1 cut(s)	1270
AgsI	TTSAA	8 cut(s)	500, 590, 1138, 1227, 1373, 1441, 1864, 1896
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AleI	CACNNNNGTG	1 cut(s)	1022
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	796, 1294
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	476, 1530
AoxI	GGCC	4 cut(s)	370, 562, 1475, 1653
ApaI	GGGCCC	1 cut(s)	1657
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	8 cut(s)	401, 424, 760, 1065, 1085, 1127, 1335, 1444
ApoI	RAATTY	3 cut(s)	605, 896, 1341
ArsI	GACNNNNNNTTYG	2 cut(s)	947, 979
Asp700I	GAANNNNTTC	1 cut(s)	1827
AspLEI	GCGC	1 cut(s)	1783
AspS9I	GGNCC	9 cut(s)	136, 293, 530, 1148, 1280, 1395, 1475, 1653, 1654
AsuC2I	CCSGG	2 cut(s)	78, 140
AsuHPI	GGTGA	3 cut(s)	370, 767, 982
AsuII	TTCGAA	1 cut(s)	650
AvaII	GGWCC	6 cut(s)	136, 293, 530, 1148, 1280, 1395
AxyI	CCTNAGG	1 cut(s)	297
BaeGI	GKGCMC	2 cut(s)	76, 1657
BalI	TGGCCA	2 cut(s)	372, 564
BanII	GRGCYC	3 cut(s)	119, 575, 1657
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	8 cut(s)	388, 411, 772, 1052, 1072, 1114, 1322, 1431
BccI	CCATC	4 cut(s)	61, 164, 832, 1616
BciVI	GTATCC	4 cut(s)	145, 532, 691, 1203
BcnI	CCSGG	2 cut(s)	78, 140
BcoDI	GTCTC	2 cut(s)	796, 1294
BfaI	CTAG	2 cut(s)	1599, 1709
BfmI	CTRYAG	2 cut(s)	425, 1324
BfuI	GTATCC	4 cut(s)	145, 532, 691, 1203
BlpI	GCTNAGC	1 cut(s)	336
BmcAI	AGTACT	1 cut(s)	1707
Bme18I	GGWCC	6 cut(s)	136, 293, 530, 1148, 1280, 1395
BmgT120I	GGNCC	9 cut(s)	136, 293, 530, 1148, 1280, 1395, 1475, 1653, 1654
BmiI	GGNNCC	5 cut(s)	118, 137, 1282, 1397, 1655
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	5 cut(s)	236, 875, 1391, 1690, 1774
BmuI	ACTGGG	1 cut(s)	696
BpmI	CTGGAG	2 cut(s)	275, 1164
Bpu10I	CCTNAGC	1 cut(s)	1838
Bpu1102I	GCTNAGC	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	2 cut(s)	78, 140
BsaBI	GATNNNNATC	1 cut(s)	1746
BsaHI	GRCGYC	1 cut(s)	789
BsaI	GGTCTC	1 cut(s)	1294
BsaJI	CCNNGG	8 cut(s)	131, 132, 574, 813, 966, 1196, 1641, 1656
BsaXI	ACNNNNNCTCC	2 cut(s)	986, 1016
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 138, 770, 862, 972, 1112, 1405
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	3 cut(s)	373, 691, 1097
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	1075, 1671
Bse8I	GATNNNNATC	1 cut(s)	1746
BseDI	CCNNGG	8 cut(s)	131, 132, 574, 813, 966, 1196, 1641, 1656
BseGI	GGATG	5 cut(s)	16, 310, 1681, 1705, 1786
BseJI	GATNNNNATC	1 cut(s)	1746
BseLI	CCNNNNNNNGG	7 cut(s)	83, 138, 770, 862, 972, 1112, 1405
BseMI	GCAATG	2 cut(s)	1075, 1671
BseMII	CTCAG	4 cut(s)	200, 311, 440, 1458
BseNI	ACTGG	3 cut(s)	373, 691, 1097
BseRI	GAGGAG	2 cut(s)	109, 220
BseSI	GKGCMC	2 cut(s)	76, 1657
BseXI	GCAGC	8 cut(s)	388, 411, 772, 1052, 1072, 1114, 1322, 1431
BseYI	CCCAGC	1 cut(s)	286
Bsh1236I	CGCG	2 cut(s)	352, 1783
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	4 cut(s)	372, 564, 1477, 1655
BsiEI	CGRYCG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	3 cut(s)	78, 139, 174
BslFI	GGGAC	2 cut(s)	114, 568
BslI	CCNNNNNNNGG	7 cut(s)	83, 138, 770, 862, 972, 1112, 1405
BsmAI	GTCTC	2 cut(s)	796, 1294
BsmBI	CGTCTC	1 cut(s)	796
BsmFI	GGGAC	2 cut(s)	114, 568
BsmI	GAATGC	2 cut(s)	426, 1207
BsnI	GGCC	4 cut(s)	372, 564, 1477, 1655
Bso31I	GGTCTC	1 cut(s)	1294
Bsp119I	TTCGAA	1 cut(s)	650
Bsp120I	GGGCCC	1 cut(s)	1653
Bsp1286I	GDGCHC	4 cut(s)	76, 119, 575, 1657
Bsp143I	GATC	8 cut(s)	325, 468, 1459, 1509, 1522, 1561, 1741, 1798
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	4 cut(s)	84, 352, 404, 1853
BspANI	GGCC	4 cut(s)	372, 564, 1477, 1655
BspCNI	CTCAG	4 cut(s)	199, 310, 441, 1459
BspFNI	CGCG	2 cut(s)	352, 1783
BspHI	TCATGA	1 cut(s)	1528
BspLI	GGNNCC	5 cut(s)	118, 137, 1282, 1397, 1655
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	2 cut(s)	476, 1530
BspQI	GCTCTTC	1 cut(s)	563
BspT104I	TTCGAA	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	1294
BsrDI	GCAATG	2 cut(s)	1075, 1671
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	3 cut(s)	373, 691, 1097
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	8 cut(s)	131, 132, 574, 813, 966, 1196, 1641, 1656
BssMI	GATC	8 cut(s)	325, 468, 1459, 1509, 1522, 1561, 1741, 1798
BssNI	GRCGYC	1 cut(s)	789
BssT1I	CCWWGG	1 cut(s)	966
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	2 cut(s)	221, 563
BstACI	GRCGYC	1 cut(s)	789
BstAPI	GCANNNNNTGC	1 cut(s)	1335
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	781, 1851
BstDEI	CTNAG	7 cut(s)	186, 297, 336, 449, 1038, 1467, 1838
BstEII	GGTNACC	1 cut(s)	1255
BstENI	CCTNNNNNAGG	3 cut(s)	768, 860, 970
BstF5I	GGATG	5 cut(s)	16, 310, 1681, 1705, 1786
BstFNI	CGCG	2 cut(s)	352, 1783
BstHHI	GCGC	1 cut(s)	1783
BstKTI	GATC	8 cut(s)	328, 471, 1462, 1512, 1525, 1564, 1744, 1801
BstMAI	GTCTC	2 cut(s)	796, 1294
BstMBI	GATC	8 cut(s)	325, 468, 1459, 1509, 1522, 1561, 1741, 1798
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 209, 570, 1085, 1335
BstNSI	RCATGY	3 cut(s)	1274, 1853, 1936
BstPI	GGTNACC	1 cut(s)	1255
BstSFI	CTRYAG	2 cut(s)	425, 1324
BstSLI	GKGCMC	2 cut(s)	76, 1657
BstUI	CGCG	2 cut(s)	352, 1783
BstV1I	GCAGC	8 cut(s)	388, 411, 772, 1052, 1072, 1114, 1322, 1431
BstX2I	RGATCY	1 cut(s)	1522
BstXI	CCANNNNNNTGG	1 cut(s)	1622
BstYI	RGATCY	1 cut(s)	1522
Bsu36I	CCTNAGG	1 cut(s)	297
BsuI	GTATCC	4 cut(s)	145, 532, 691, 1203
BsuRI	GGCC	4 cut(s)	372, 564, 1477, 1655
BtsCI	GGATG	5 cut(s)	16, 310, 1681, 1705, 1786
BtsIMutI	CAGTG	2 cut(s)	194, 783
Cac8I	GCNNGC	2 cut(s)	781, 1851
CciI	TCATGA	1 cut(s)	1528
CfoI	GCGC	1 cut(s)	1783
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	9 cut(s)	136, 293, 530, 1148, 1280, 1395, 1475, 1653, 1654
CpoI	CGGWCCG	1 cut(s)	530
Csp6I	GTAC	5 cut(s)	177, 513, 1706, 1733, 1928
CspI	CGGWCCG	1 cut(s)	530
CviQI	GTAC	5 cut(s)	177, 513, 1706, 1733, 1928
DdeI	CTNAG	7 cut(s)	186, 297, 336, 449, 1038, 1467, 1838
DpnI	GATC	8 cut(s)	327, 470, 1461, 1511, 1524, 1563, 1743, 1800
DpnII	GATC	8 cut(s)	325, 468, 1459, 1509, 1522, 1561, 1741, 1798
DrdI	GACNNNNNNGTC	1 cut(s)	1791
DseDI	GACNNNNNNGTC	1 cut(s)	1791
EaeI	YGGCCR	2 cut(s)	370, 562
Eam1104I	CTCTTC	2 cut(s)	221, 563
EarI	CTCTTC	2 cut(s)	221, 563
Eco130I	CCWWGG	1 cut(s)	966
Eco24I	GRGCYC	3 cut(s)	119, 575, 1657
Eco31I	GGTCTC	1 cut(s)	1294
Eco32I	GATATC	3 cut(s)	1033, 1716, 1919
Eco47I	GGWCC	6 cut(s)	136, 293, 530, 1148, 1280, 1395
Eco57I	CTGAAG	1 cut(s)	1590
Eco81I	CCTNAGG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	1255
EcoNI	CCTNNNNNAGG	3 cut(s)	768, 860, 970
EcoO109I	RGGNCCY	1 cut(s)	1395
EcoO65I	GGTNACC	1 cut(s)	1255
EcoRV	GATATC	3 cut(s)	1033, 1716, 1919
EcoT14I	CCWWGG	1 cut(s)	966
EcoT22I	ATGCAT	2 cut(s)	1683, 1851
EcoT38I	GRGCYC	3 cut(s)	119, 575, 1657
ErhI	CCWWGG	1 cut(s)	966
Esp3I	CGTCTC	1 cut(s)	796
FalI	AAGNNNNNCTT	8 cut(s)	576, 608, 998, 1030, 1044, 1076, 1406, 1438
FaqI	GGGAC	2 cut(s)	114, 568
FblI	GTMKAC	1 cut(s)	1665
FokI	GGATG	5 cut(s)	23, 317, 1668, 1712, 1773
FriOI	GRGCYC	3 cut(s)	119, 575, 1657
FspBI	CTAG	2 cut(s)	1599, 1709
GlaI	GCGC	1 cut(s)	1782
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	2 cut(s)	275, 1164
HaeIII	GGCC	4 cut(s)	372, 564, 1477, 1655
HapII	CCGG	3 cut(s)	78, 139, 174
HhaI	GCGC	1 cut(s)	1783
Hin1I	GRCGYC	1 cut(s)	789
Hin6I	GCGC	1 cut(s)	1781
HinP1I	GCGC	1 cut(s)	1781
HindIII	AAGCTT	4 cut(s)	338, 981, 1040, 1420
HpaII	CCGG	3 cut(s)	78, 139, 174
HphI	GGTGA	3 cut(s)	370, 767, 982
Hpy166II	GTNNAC	7 cut(s)	74, 93, 524, 723, 937, 1666, 1930
Hpy188I	TCNGA	8 cut(s)	450, 871, 1051, 1468, 1537, 1588, 1621, 1720
Hpy188III	TCNNGA	9 cut(s)	160, 254, 662, 797, 1313, 1513, 1529, 1685, 1796
Hpy8I	GTNNAC	7 cut(s)	74, 93, 524, 723, 937, 1666, 1930
HpyAV	CCTTC	9 cut(s)	215, 449, 856, 1046, 1233, 1244, 1367, 1399, 1442
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	1 cut(s)	789
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 209, 570, 1085, 1335
HpyF3I	CTNAG	7 cut(s)	186, 297, 336, 449, 1038, 1467, 1838
HpySE526I	ACGT	1 cut(s)	789
Hsp92I	GRCGYC	1 cut(s)	789
HspAI	GCGC	1 cut(s)	1781
Kzo9I	GATC	8 cut(s)	325, 468, 1459, 1509, 1522, 1561, 1741, 1798
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	2 cut(s)	122, 811
Lsp1109I	GCAGC	8 cut(s)	388, 411, 772, 1052, 1072, 1114, 1322, 1431
LweI	GCATC	5 cut(s)	236, 875, 1391, 1690, 1774
MaeI	CTAG	2 cut(s)	1599, 1709
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	1 cut(s)	1255
MalI	GATC	8 cut(s)	327, 470, 1461, 1511, 1524, 1563, 1743, 1800
MboI	GATC	8 cut(s)	325, 468, 1459, 1509, 1522, 1561, 1741, 1798
MboII	GAAGA	9 cut(s)	44, 238, 320, 442, 580, 967, 1006, 1126, 1517
MflI	RGATCY	1 cut(s)	1522
MhlI	GDGCHC	4 cut(s)	76, 119, 575, 1657
MlsI	TGGCCA	2 cut(s)	372, 564
MluCI	AATT	6 cut(s)	437, 605, 681, 896, 1306, 1341
MluNI	TGGCCA	2 cut(s)	372, 564
MlyI	GAGTC	6 cut(s)	519, 752, 937, 995, 1460, 1577
MmeI	TCCRAC	1 cut(s)	516
Mox20I	TGGCCA	2 cut(s)	372, 564
Mph1103I	ATGCAT	2 cut(s)	1683, 1851
MroXI	GAANNNNTTC	1 cut(s)	1827
MscI	TGGCCA	2 cut(s)	372, 564
MseI	TTAA	2 cut(s)	1101, 1413
MslI	CAYNNNNRTG	3 cut(s)	1022, 1620, 1676
Msp20I	TGGCCA	2 cut(s)	372, 564
MspI	CCGG	3 cut(s)	78, 139, 174
Mva1269I	GAATGC	2 cut(s)	426, 1207
MvnI	CGCG	2 cut(s)	352, 1783
MwoI	GCNNNNNNNGC	5 cut(s)	46, 209, 570, 1085, 1335
NciI	CCSGG	2 cut(s)	78, 140
NdeII	GATC	8 cut(s)	325, 468, 1459, 1509, 1522, 1561, 1741, 1798
NlaIV	GGNNCC	5 cut(s)	118, 137, 1282, 1397, 1655
NsiI	ATGCAT	2 cut(s)	1683, 1851
NspI	RCATGY	3 cut(s)	1274, 1853, 1936
NspV	TTCGAA	1 cut(s)	650
OliI	CACNNNNGTG	1 cut(s)	1022
PaeI	GCATGC	1 cut(s)	1853
PagI	TCATGA	1 cut(s)	1528
PasI	CCCWGGG	1 cut(s)	132
PciI	ACATGT	1 cut(s)	1270
PciSI	GCTCTTC	1 cut(s)	563
PctI	GAATGC	2 cut(s)	426, 1207
PdmI	GAANNNNTTC	1 cut(s)	1827
PfeI	GAWTC	7 cut(s)	445, 500, 641, 665, 1532, 1589, 1892
PflFI	GACNNNGTC	1 cut(s)	528
PflMI	CCANNNNNTGG	1 cut(s)	1112
PleI	GAGTC	6 cut(s)	519, 751, 937, 995, 1459, 1577
PpsI	GAGTC	6 cut(s)	519, 751, 937, 995, 1459, 1577
PpuMI	RGGWCCY	1 cut(s)	1395
PscI	ACATGT	1 cut(s)	1270
Psp5II	RGGWCCY	1 cut(s)	1395
PspEI	GGTNACC	1 cut(s)	1255
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	5 cut(s)	118, 137, 1282, 1397, 1655
PspOMI	GGGCCC	1 cut(s)	1653
PspPI	GGNCC	9 cut(s)	136, 293, 530, 1148, 1280, 1395, 1475, 1653, 1654
PspPPI	RGGWCCY	1 cut(s)	1395
PstI	CTGCAG	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	1522
PsyI	GACNNNGTC	1 cut(s)	528
RsaI	GTAC	5 cut(s)	178, 514, 1707, 1734, 1929
RsaNI	GTAC	5 cut(s)	177, 513, 1706, 1733, 1928
RseI	CAYNNNNRTG	3 cut(s)	1022, 1620, 1676
Rsr2I	CGGWCCG	1 cut(s)	530
RsrII	CGGWCCG	1 cut(s)	530
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	1101, 1413
Sau3AI	GATC	8 cut(s)	325, 468, 1459, 1509, 1522, 1561, 1741, 1798
Sau96I	GGNCC	9 cut(s)	136, 293, 530, 1148, 1280, 1395, 1475, 1653, 1654
ScaI	AGTACT	1 cut(s)	1707
SchI	GAGTC	6 cut(s)	519, 752, 937, 995, 1460, 1577
SduI	GDGCHC	4 cut(s)	76, 119, 575, 1657
SfaNI	GCATC	5 cut(s)	236, 875, 1391, 1690, 1774
SfcI	CTRYAG	2 cut(s)	425, 1324
SfuI	TTCGAA	1 cut(s)	650
SinI	GGWCC	6 cut(s)	136, 293, 530, 1148, 1280, 1395
SmiMI	CAYNNNNRTG	3 cut(s)	1022, 1620, 1676
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SphI	GCATGC	1 cut(s)	1853
Sse9I	AATT	6 cut(s)	437, 605, 681, 896, 1306, 1341
SsiI	CCGC	4 cut(s)	84, 352, 404, 1853
SspMI	CTAG	2 cut(s)	1599, 1709
StyI	CCWWGG	1 cut(s)	966
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	3 cut(s)	644, 650, 953
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	6 cut(s)	437, 605, 681, 896, 1306, 1341
TatI	WGTACW	2 cut(s)	1705, 1732
TauI	GCSGC	2 cut(s)	87, 407
TfiI	GAWTC	7 cut(s)	445, 500, 641, 665, 1532, 1589, 1892
Tru1I	TTAA	2 cut(s)	1101, 1413
Tru9I	TTAA	2 cut(s)	1101, 1413
TscAI	CASTG	2 cut(s)	194, 790
TseI	GCWGC	8 cut(s)	401, 424, 760, 1065, 1085, 1127, 1335, 1444
TspDTI	ATGAA	7 cut(s)	33, 299, 617, 1034, 1304, 1517, 1545
TspGWI	ACGGA	3 cut(s)	112, 522, 1564
TspRI	CASTG	2 cut(s)	194, 790
Tth111I	GACNNNGTC	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	1112
VneI	GTGCAC	1 cut(s)	72
VpaK11BI	GGWCC	6 cut(s)	136, 293, 530, 1148, 1280, 1395
XagI	CCTNNNNNAGG	3 cut(s)	768, 860, 970
XapI	RAATTY	3 cut(s)	605, 896, 1341
XceI	RCATGY	3 cut(s)	1274, 1853, 1936
XmiI	GTMKAC	1 cut(s)	1665
XmnI	GAANNNNTTC	1 cut(s)	1827
XspI	CTAG	2 cut(s)	1599, 1709
ZraI	GACGTC	1 cut(s)	790
ZrmI	AGTACT	1 cut(s)	1707
Zsp2I	ATGCAT	2 cut(s)	1683, 1851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.