Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

10236584 .. 10240439

Gene Structure 3856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG120700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGGACATGGACGTTGATGAACCAACCAAAGGCCAAGAAGAAAAGCAAGGAAAGCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGCGGCAAGTCCACATTCTGCGAACAAGTCATGGGCTCCTCCGTTCGTCCCTTTGTCCGGGTCTGCCAGGATACTATCAAAAATGGGAAAGCCGGAACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTGCATTGCGGGAAGGAAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAGCAAAGAGATGAGTTTGTGAAGCTGGGTGGTCCTCAGGTGGATGTTCATGCTGTGGTGCTTGATCTTCCTTCTAAGCTTTGTATCTCGCGGTCGGTGAAGCGAACTGGCCATGAGGGGAACTTGCAAGGTGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGATAGGATCACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTCGTACATATAGTGGACTCAGTCCGTTGGATACACTTTCCCATGGTACTTTTGGCCAGAAGAGCCCGGGTGCAAAAGTTCAACTTGGTATAATGAAATTCCTAAAGAAAACAGATGCTCCTACTAATACTGAATCGACTTCAAACAAGGTTCAGGATTCTAATGCTTCTCAAATTACTGGGGGAAAGGATACCAGTGTGAAAGGAACAGGTTTGTTTACTGAAAGTGGTAGTATGGAGTCCAAGAAAGGTGAGCAGCCTGTCGTAGGTTCTGCTGGCACTGACTTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCAAGACTTGTTTTAGTGGACTTGACTCATAAATCGAAGATTTTGTCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACATTGACTCCAAGAGGTTCTTCACATTTGTGGGAGATATCACTAAGCTTCATTCAGAAGGAGGTCTTTGCTGCAATGTGATAGCTAATGCTGCTAACTGGCGACTTAAACCAGGAGGTGGTGGTGTCAATGCTGCAATCTTCAATGCTGGAGGTCCAGCTTTAGAGGTTGCAACCAAAGAACAAGCCAAATCTCTGTATCCTGGGAATGCTGTGGTTGTTCCTCTCCCTTCAACTTCTCCTTTGTTTTGTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAACCCACAGAGACCAAATTATCTTGACAATGACTATGGCAAAGGCTGCAAAATTCTCCATGACACTTATACTTCACTTTTTGAAGGTTTTGCATCAATAGTGAGGACCCAAAAGAAGGTATTTAAGGGAAGCTTTGGAAACCTTCGGTTGAAGCTGCCAGAGTCAAAAGATCACCCTGAGAGTGGGCCTACAAATCACTCTACAAATACCTATCAAAAGATCAAGAGAGAGGATCTTCATGAATCTGAAAGGAACAAACGGAGTAAAGGAGATCAAGCTGAAGCTGAAAACGTCTCTGCTTCTAATGCTAGTAAATCAAACCTCCACTCTGATGGAAGCAAGAATAAATCCTGGGGAACATGGGCCCAGGCTGTCTACAACATTGCCATGCATCCAGAGAAGCAGAGGGATGTAGTACTAGAGATATCAGATGATGTCGTTGTACTAAATGATCTTTATCCAAAGGTAAGTCACACCTATTATAGTTATCATCCACTTCTATGTTTTAGCTGGTTGACAAAATTTTGGAATTCTGCAGGCACAAATGCATCTCCTGGTGGTAGCGCGACATCCTGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

626

Amino Acids

67.88

Weight (kDa)

8.79

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	22 - 148	1.3e-12	AAA domain
Macro	PF01661	364 - 442	1.3e-06	Macro domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1873
AccB7I	CCANNNNNTGG	1 cut(s)	1121
AccI	GTMKAC	1 cut(s)	1674
AccII	CGCG	2 cut(s)	358, 1865
AciI	CCGC	4 cut(s)	90, 223, 358, 410
AclWI	GGATC	2 cut(s)	482, 1539
AcoI	YGGCCR	2 cut(s)	376, 568
AcsI	RAATTY	5 cut(s)	611, 905, 1350, 1820, 1828
AcuI	CTGAAG	1 cut(s)	1599
AfaI	GTAC	4 cut(s)	520, 562, 1716, 1743
AfiI	CCNNNNNNNGG	9 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414, 1481
AflIII	ACRYGT	1 cut(s)	1279
AgsI	TTSAA	7 cut(s)	506, 596, 657, 1147, 1236, 1382, 1450
AjnI	CCWGG	8 cut(s)	153, 822, 1114, 1204, 1649, 1665, 1852, 1871
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AleI	CACNNNNGTG	1 cut(s)	1031
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	1303, 1597
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	482, 1539
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	5 cut(s)	31, 376, 568, 1484, 1662
ApaI	GGGCCC	1 cut(s)	1666
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	8 cut(s)	407, 430, 769, 1074, 1094, 1136, 1344, 1453
ApoI	RAATTY	5 cut(s)	611, 905, 1350, 1820, 1828
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
AspLEI	GCGC	1 cut(s)	1865
AspS9I	GGNCC	7 cut(s)	299, 1157, 1289, 1404, 1484, 1662, 1663
AsuC2I	CCSGG	4 cut(s)	84, 146, 581, 582
AsuHPI	GGTGA	4 cut(s)	376, 776, 991, 1463
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	4 cut(s)	299, 1157, 1289, 1404
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	82, 1666
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	2 cut(s)	378, 570
BanII	GRGCYC	3 cut(s)	125, 581, 1666
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	8 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440
BccI	CCATC	3 cut(s)	67, 841, 1625
BciT130I	CCWGG	8 cut(s)	155, 824, 1116, 1206, 1651, 1667, 1854, 1873
BciVI	GTATCC	4 cut(s)	151, 538, 697, 1212
BcnI	CCSGG	4 cut(s)	84, 146, 581, 582
BcoDI	GTCTC	2 cut(s)	1303, 1597
BfaI	CTAG	2 cut(s)	1608, 1718
BfmI	CTRYAG	2 cut(s)	431, 1833
BfuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BmcAI	AGTACT	1 cut(s)	1716
Bme18I	GGWCC	4 cut(s)	299, 1157, 1289, 1404
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	7 cut(s)	299, 1157, 1289, 1404, 1484, 1662, 1663
BmiI	GGNNCC	4 cut(s)	124, 1291, 1406, 1664
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1856
BmuI	ACTGGG	1 cut(s)	702
BpmI	CTGGAG	2 cut(s)	281, 1173
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	4 cut(s)	84, 146, 581, 582
BsaBI	GATNNNNATC	1 cut(s)	1755
BsaI	GGTCTC	1 cut(s)	1303
BsaJI	CCNNGG	7 cut(s)	556, 580, 822, 975, 1205, 1650, 1665
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 995, 1025
Bsc4I	CCNNNNNNNGG	9 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414, 1481
Bse1I	ACTGG	4 cut(s)	379, 697, 708, 1106
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	3 cut(s)	218, 1084, 1680
Bse8I	GATNNNNATC	1 cut(s)	1755
BseBI	CCWGG	8 cut(s)	155, 824, 1116, 1206, 1651, 1667, 1854, 1873
BseDI	CCNNGG	7 cut(s)	556, 580, 822, 975, 1205, 1650, 1665
BseGI	GGATG	5 cut(s)	316, 1690, 1714, 1789, 1868
BseJI	GATNNNNATC	1 cut(s)	1755
BseLI	CCNNNNNNNGG	9 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414, 1481
BseMI	GCAATG	3 cut(s)	218, 1084, 1680
BseMII	CTCAG	5 cut(s)	206, 317, 446, 547, 1467
BseNI	ACTGG	4 cut(s)	379, 697, 708, 1106
BseRI	GAGGAG	2 cut(s)	115, 226
BseSI	GKGCMC	2 cut(s)	82, 1666
BseXI	GCAGC	8 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	2 cut(s)	358, 1865
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	4 cut(s)	84, 145, 180, 581
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	9 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414, 1481
BsmAI	GTCTC	2 cut(s)	1303, 1597
BsmBI	CGTCTC	1 cut(s)	1597
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	2 cut(s)	432, 1216
BsnI	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
Bso31I	GGTCTC	1 cut(s)	1303
BsoBI	CYCGRG	1 cut(s)	580
Bsp120I	GGGCCC	1 cut(s)	1662
Bsp1286I	GDGCHC	4 cut(s)	82, 125, 581, 1666
Bsp143I	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	4 cut(s)	90, 223, 358, 410
BspANI	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
BspCNI	CTCAG	5 cut(s)	205, 316, 447, 546, 1468
BspFNI	CGCG	2 cut(s)	358, 1865
BspHI	TCATGA	1 cut(s)	1537
BspLI	GGNNCC	4 cut(s)	124, 1291, 1406, 1664
BspMAI	CTGCAG	2 cut(s)	435, 1837
BspPI	GGATC	2 cut(s)	482, 1539
BspQI	GCTCTTC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	1303
BsrDI	GCAATG	3 cut(s)	218, 1084, 1680
BsrI	ACTGG	4 cut(s)	379, 697, 708, 1106
BssECI	CCNNGG	7 cut(s)	556, 580, 822, 975, 1205, 1650, 1665
BssMI	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750
BssT1I	CCWWGG	2 cut(s)	556, 975
Bst2UI	CCWGG	8 cut(s)	155, 824, 1116, 1206, 1651, 1667, 1854, 1873
Bst6I	CTCTTC	1 cut(s)	569
BstAPI	GCANNNNNTGC	1 cut(s)	1344
BstC8I	GCNNGC	2 cut(s)	790, 1837
BstDEI	CTNAG	7 cut(s)	192, 303, 342, 455, 533, 1047, 1476
BstDSI	CCRYGG	1 cut(s)	556
BstEII	GGTNACC	1 cut(s)	1264
BstENI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
BstF5I	GGATG	5 cut(s)	316, 1690, 1714, 1789, 1868
BstFNI	CGCG	2 cut(s)	358, 1865
BstHHI	GCGC	1 cut(s)	1865
BstKTI	GATC	7 cut(s)	334, 477, 1471, 1521, 1534, 1573, 1753
BstMAI	GTCTC	2 cut(s)	1303, 1597
BstMBI	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 215, 576, 1094, 1344, 1604
BstNI	CCWGG	8 cut(s)	155, 824, 1116, 1206, 1651, 1667, 1854, 1873
BstNSI	RCATGY	1 cut(s)	1283
BstPI	GGTNACC	1 cut(s)	1264
BstSFI	CTRYAG	2 cut(s)	431, 1833
BstSLI	GKGCMC	2 cut(s)	82, 1666
BstUI	CGCG	2 cut(s)	358, 1865
BstV1I	GCAGC	8 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440
BstX2I	RGATCY	1 cut(s)	1531
BstXI	CCANNNNNNTGG	1 cut(s)	1631
BstYI	RGATCY	1 cut(s)	1531
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BsuRI	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	5 cut(s)	316, 1690, 1714, 1789, 1868
BtsIMutI	CAGTG	3 cut(s)	200, 715, 792
Cac8I	GCNNGC	2 cut(s)	790, 1837
CciI	TCATGA	1 cut(s)	1537
CfoI	GCGC	1 cut(s)	1865
Cfr13I	GGNCC	7 cut(s)	299, 1157, 1289, 1404, 1484, 1662, 1663
Cfr9I	CCCGGG	1 cut(s)	580
Csp6I	GTAC	4 cut(s)	519, 561, 1715, 1742
CviQI	GTAC	4 cut(s)	519, 561, 1715, 1742
DdeI	CTNAG	7 cut(s)	192, 303, 342, 455, 533, 1047, 1476
DpnI	GATC	7 cut(s)	333, 476, 1470, 1520, 1533, 1572, 1752
DpnII	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750
DrdI	GACNNNNNNGTC	1 cut(s)	1873
DseDI	GACNNNNNNGTC	1 cut(s)	1873
EaeI	YGGCCR	2 cut(s)	376, 568
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	2 cut(s)	556, 975
Eco24I	GRGCYC	3 cut(s)	125, 581, 1666
Eco31I	GGTCTC	1 cut(s)	1303
Eco32I	GATATC	2 cut(s)	1042, 1725
Eco47I	GGWCC	4 cut(s)	299, 1157, 1289, 1404
Eco57I	CTGAAG	1 cut(s)	1599
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	580
Eco91I	GGTNACC	1 cut(s)	1264
EcoNI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
EcoO109I	RGGNCCY	1 cut(s)	1404
EcoO65I	GGTNACC	1 cut(s)	1264
EcoRI	GAATTC	1 cut(s)	1828
EcoRII	CCWGG	8 cut(s)	153, 822, 1114, 1204, 1649, 1665, 1852, 1871
EcoRV	GATATC	2 cut(s)	1042, 1725
EcoT14I	CCWWGG	2 cut(s)	556, 975
EcoT22I	ATGCAT	2 cut(s)	1692, 1849
EcoT38I	GRGCYC	3 cut(s)	125, 581, 1666
ErhI	CCWWGG	2 cut(s)	556, 975
Esp3I	CGTCTC	1 cut(s)	1597
FalI	AAGNNNNNCTT	8 cut(s)	582, 614, 1007, 1039, 1053, 1085, 1415, 1447
FaqI	GGGAC	1 cut(s)	120
FauI	CCCGC	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	1674
FokI	GGATG	5 cut(s)	323, 1677, 1721, 1776, 1855
FriOI	GRGCYC	3 cut(s)	125, 581, 1666
FspBI	CTAG	2 cut(s)	1608, 1718
GlaI	GCGC	1 cut(s)	1864
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	2 cut(s)	281, 1173
HaeIII	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
HapII	CCGG	4 cut(s)	84, 145, 180, 581
HhaI	GCGC	1 cut(s)	1865
Hin6I	GCGC	1 cut(s)	1863
HinP1I	GCGC	1 cut(s)	1863
HincII	GTYRAC	1 cut(s)	1815
HindII	GTYRAC	1 cut(s)	1815
HindIII	AAGCTT	4 cut(s)	344, 990, 1049, 1429
HpaII	CCGG	4 cut(s)	84, 145, 180, 581
HphI	GGTGA	4 cut(s)	376, 776, 991, 1463
Hpy166II	GTNNAC	7 cut(s)	80, 99, 530, 732, 946, 1675, 1815
Hpy188I	TCNGA	6 cut(s)	456, 880, 1060, 1546, 1630, 1729
Hpy188III	TCNNGA	8 cut(s)	260, 668, 806, 1322, 1522, 1538, 1694, 1878
Hpy8I	GTNNAC	7 cut(s)	80, 99, 530, 732, 946, 1675, 1815
HpyCH4IV	ACGT	2 cut(s)	12, 1590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 215, 576, 1094, 1344, 1604
HpyF3I	CTNAG	7 cut(s)	192, 303, 342, 455, 533, 1047, 1476
HpySE526I	ACGT	2 cut(s)	12, 1590
HspAI	GCGC	1 cut(s)	1863
Kzo9I	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	3 cut(s)	128, 637, 820
Lsp1109I	GCAGC	8 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440
LweI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1856
MaeI	CTAG	2 cut(s)	1608, 1718
MaeII	ACGT	2 cut(s)	12, 1590
MaeIII	GTNAC	2 cut(s)	1264, 1769
MalI	GATC	7 cut(s)	333, 476, 1470, 1520, 1533, 1572, 1752
MboI	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750
MboII	GAAGA	8 cut(s)	50, 326, 448, 586, 976, 1015, 1135, 1526
MflI	RGATCY	1 cut(s)	1531
MhlI	GDGCHC	4 cut(s)	82, 125, 581, 1666
MlsI	TGGCCA	2 cut(s)	378, 570
MluCI	AATT	8 cut(s)	443, 611, 687, 905, 1315, 1350, 1820, 1828
MluNI	TGGCCA	2 cut(s)	378, 570
MlyI	GAGTC	5 cut(s)	525, 761, 946, 1004, 1469
MmeI	TCCRAC	1 cut(s)	522
Mox20I	TGGCCA	2 cut(s)	378, 570
Mph1103I	ATGCAT	2 cut(s)	1692, 1849
MscI	TGGCCA	2 cut(s)	378, 570
MseI	TTAA	2 cut(s)	1110, 1422
MslI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1798
Msp20I	TGGCCA	2 cut(s)	378, 570
MspI	CCGG	4 cut(s)	84, 145, 180, 581
Mva1269I	GAATGC	2 cut(s)	432, 1216
MvaI	CCWGG	8 cut(s)	155, 824, 1116, 1206, 1651, 1667, 1854, 1873
MvnI	CGCG	2 cut(s)	358, 1865
MwoI	GCNNNNNNNGC	6 cut(s)	52, 215, 576, 1094, 1344, 1604
NciI	CCSGG	4 cut(s)	84, 146, 581, 582
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750
NlaIV	GGNNCC	4 cut(s)	124, 1291, 1406, 1664
NmuCI	GTSAC	1 cut(s)	1769
NsiI	ATGCAT	2 cut(s)	1692, 1849
NspI	RCATGY	1 cut(s)	1283
OliI	CACNNNNGTG	1 cut(s)	1031
PagI	TCATGA	1 cut(s)	1537
PciI	ACATGT	1 cut(s)	1279
PciSI	GCTCTTC	1 cut(s)	569
PctI	GAATGC	2 cut(s)	432, 1216
PfeI	GAWTC	5 cut(s)	451, 506, 647, 671, 1541
PflFI	GACNNNGTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	1121
PleI	GAGTC	5 cut(s)	525, 760, 946, 1004, 1468
PpsI	GAGTC	5 cut(s)	525, 760, 946, 1004, 1468
PpuMI	RGGWCCY	1 cut(s)	1404
PscI	ACATGT	1 cut(s)	1279
Psp5II	RGGWCCY	1 cut(s)	1404
Psp6I	CCWGG	8 cut(s)	153, 822, 1114, 1204, 1649, 1665, 1852, 1871
PspEI	GGTNACC	1 cut(s)	1264
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	8 cut(s)	153, 822, 1114, 1204, 1649, 1665, 1852, 1871
PspN4I	GGNNCC	4 cut(s)	124, 1291, 1406, 1664
PspOMI	GGGCCC	1 cut(s)	1662
PspPI	GGNCC	7 cut(s)	299, 1157, 1289, 1404, 1484, 1662, 1663
PspPPI	RGGWCCY	1 cut(s)	1404
PstI	CTGCAG	2 cut(s)	435, 1837
PsuI	RGATCY	1 cut(s)	1531
PsyI	GACNNNGTC	1 cut(s)	534
RsaI	GTAC	4 cut(s)	520, 562, 1716, 1743
RsaNI	GTAC	4 cut(s)	519, 561, 1715, 1742
RseI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1798
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	1110, 1422
Sau3AI	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750
Sau96I	GGNCC	7 cut(s)	299, 1157, 1289, 1404, 1484, 1662, 1663
ScaI	AGTACT	1 cut(s)	1716
SchI	GAGTC	5 cut(s)	525, 761, 946, 1004, 1469
SduI	GDGCHC	4 cut(s)	82, 125, 581, 1666
SfaNI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1856
SfcI	CTRYAG	2 cut(s)	431, 1833
SinI	GGWCC	4 cut(s)	299, 1157, 1289, 1404
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1798
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
Sse9I	AATT	8 cut(s)	443, 611, 687, 905, 1315, 1350, 1820, 1828
SsiI	CCGC	4 cut(s)	90, 223, 358, 410
SspMI	CTAG	2 cut(s)	1608, 1718
StyI	CCWWGG	2 cut(s)	556, 975
TaiI	ACGT	2 cut(s)	15, 1593
TaqI	TCGA	2 cut(s)	650, 962
TasI	AATT	8 cut(s)	443, 611, 687, 905, 1315, 1350, 1820, 1828
TatI	WGTACW	2 cut(s)	1714, 1741
TauI	GCSGC	2 cut(s)	93, 413
TfiI	GAWTC	5 cut(s)	451, 506, 647, 671, 1541
Tru1I	TTAA	2 cut(s)	1110, 1422
Tru9I	TTAA	2 cut(s)	1110, 1422
TscAI	CASTG	3 cut(s)	200, 715, 799
TseFI	GTSAC	1 cut(s)	1769
TseI	GCWGC	8 cut(s)	407, 430, 769, 1074, 1094, 1136, 1344, 1453
Tsp45I	GTSAC	1 cut(s)	1769
TspDTI	ATGAA	7 cut(s)	33, 305, 623, 1043, 1313, 1526, 1554
TspGWI	ACGGA	3 cut(s)	118, 528, 1573
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	3 cut(s)	200, 715, 799
Tth111I	GACNNNGTC	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	1121
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	4 cut(s)	299, 1157, 1289, 1404
XagI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
XapI	RAATTY	5 cut(s)	611, 905, 1350, 1820, 1828
XceI	RCATGY	1 cut(s)	1283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmaI	CCCGGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	1674
XspI	CTAG	2 cut(s)	1608, 1718
ZrmI	AGTACT	1 cut(s)	1716
Zsp2I	ATGCAT	2 cut(s)	1692, 1849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.