Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

9862560 .. 9863846

Gene Structure 1287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG121400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGACATGGATGTTGATGAACCAACCAAAGGCGAAGAAGAAAAGCAAGGAAAGCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGTGGCAAGTCCACATTCTGCGACCAAGTCATGGGCTCCTCTGTTCGTCCCTGGGTCCGGGTCTGCCGGGATACTATCAAGAATGGTAAAGCCGGAACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTGCATTGAGGGAAGGAAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAACAAAGGGATGAGTTTGTGAAGCTGGTTGGTCCTCAAGTGGACGTTCATACTGTGATGCTTGATCTTCCTGCTAAGCTTTGTATATCACGGTTGGTGAAGCGAACTGGCCATGAGGGGAACTTGCAAGGCAGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGTAGACTCTTTCCGGTGGATACACTTCCCCATGGCACTTTTGGCCAGAAGAGCCCTGGTGCAAAAGTTCAACTTGGTATAATGAAATTCGTAAAGAAAACAGATGCTCCTACTAATACTGAATCGACTTCGAACAAGGTTCAGGATTCTAATGCTTTTCAAATTATTGGGGGAAAGGATACCAGTTTGAAAGGAACAGGTTTGTTTACTGAAAGTTGTAGTATGGAGTCCAAGAAAGGTGAACGGCCTGTTGTAGGTTCTGCTGGCACTGATGACTCTCTTGACAATGCTCCCACTCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTATGACATTAAGAAGGCATCTGACATTATTGTAGAGAAAGTTGTAAAATTTGTAAATAAACTTGGAAATGCCAGACTTTTTTTAGTGGACTTGACTCATAAATCGAAGATTTTGTCTTTGATAAAGCTTCACAGAAAAACATTGACTCCAACAGGTTCTTCACATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

321

Amino Acids

34.92

Weight (kDa)

9.38

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	22 - 149	3.8e-13	AAA domain
AAA_18	PF13238	22 - 134	3.4e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	466
AciI	CCGC	1 cut(s)	410
AcoI	YGGCCR	2 cut(s)	376, 505
AcsI	RAATTY	2 cut(s)	548, 842
AfiI	CCNNNNNNNGG	5 cut(s)	29, 89, 118, 144, 716
AgsI	TTSAA	3 cut(s)	533, 623, 652
AjnI	CCWGG	2 cut(s)	137, 517
AjuI	GAANNNNNNNTTGG	1 cut(s)	937
AluBI	AGCT	5 cut(s)	191, 292, 346, 407, 922
AluI	AGCT	5 cut(s)	191, 292, 346, 407, 922
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
AoxI	GGCC	3 cut(s)	376, 505, 707
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	407, 430
ApoI	RAATTY	2 cut(s)	548, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AspS9I	GGNCC	2 cut(s)	142, 299
AsuC2I	CCSGG	3 cut(s)	84, 146, 155
AsuHPI	GGTGA	2 cut(s)	376, 713
AsuII	TTCGAA	1 cut(s)	593
AvaII	GGWCC	2 cut(s)	142, 299
BaeGI	GKGCMC	1 cut(s)	82
BalI	TGGCCA	2 cut(s)	378, 507
BanII	GRGCYC	2 cut(s)	125, 518
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	394, 417
BccI	CCATC	2 cut(s)	67, 778
BceAI	ACGGC	1 cut(s)	722
BciT130I	CCWGG	2 cut(s)	139, 519
BciVI	GTATCC	3 cut(s)	151, 475, 634
BcnI	CCSGG	3 cut(s)	84, 146, 155
BfmI	CTRYAG	1 cut(s)	431
BfuI	GTATCC	3 cut(s)	151, 475, 634
BisI	GCNGC	3 cut(s)	408, 411, 431
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	3 cut(s)	409, 412, 432
Bme1390I	CCNGG	5 cut(s)	84, 139, 146, 155, 519
Bme18I	GGWCC	2 cut(s)	142, 299
BmgT120I	GGNCC	2 cut(s)	142, 299
BmiI	GGNNCC	2 cut(s)	124, 143
BmrFI	CCNGG	5 cut(s)	84, 139, 146, 155, 519
BmsI	GCATC	4 cut(s)	242, 315, 556, 821
BpmI	CTGGAG	1 cut(s)	281
Bpu1102I	GCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	593
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	84, 146, 155
BsaJI	CCNNGG	4 cut(s)	137, 138, 493, 517
BsaWI	WCCGGW	1 cut(s)	475
BsaXI	ACNNNNNCTCC	4 cut(s)	553, 583, 925, 955
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 89, 118, 144, 716
Bse1I	ACTGG	2 cut(s)	379, 645
BseBI	CCWGG	2 cut(s)	139, 519
BseDI	CCNNGG	4 cut(s)	137, 138, 493, 517
BseGI	GGATG	2 cut(s)	16, 283
BseLI	CCNNNNNNNGG	5 cut(s)	29, 89, 118, 144, 716
BseMII	CTCAG	2 cut(s)	206, 446
BseNI	ACTGG	2 cut(s)	379, 645
BseRI	GAGGAG	2 cut(s)	115, 226
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	394, 417
BshFI	GGCC	3 cut(s)	378, 507, 709
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	5 cut(s)	84, 145, 154, 180, 476
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	5 cut(s)	29, 89, 118, 144, 716
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	378, 507, 709
Bsp119I	TTCGAA	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	82, 125, 518
Bsp143I	GATC	1 cut(s)	331
Bsp1720I	GCTNAGC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	3 cut(s)	378, 507, 709
BspCNI	CTCAG	2 cut(s)	205, 447
BspLI	GGNNCC	2 cut(s)	124, 143
BspMAI	CTGCAG	1 cut(s)	435
BspQI	GCTCTTC	1 cut(s)	506
BspT104I	TTCGAA	1 cut(s)	593
BsrI	ACTGG	2 cut(s)	379, 645
BssECI	CCNNGG	4 cut(s)	137, 138, 493, 517
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	139, 519
Bst4CI	ACNGT	2 cut(s)	322, 360
Bst6I	CTCTTC	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	3 cut(s)	192, 342, 455
BstDSI	CCRYGG	1 cut(s)	493
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	2 cut(s)	16, 283
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 215, 504, 513
BstNI	CCWGG	2 cut(s)	139, 519
BstSCI	CCNGG	5 cut(s)	82, 137, 144, 153, 517
BstSFI	CTRYAG	1 cut(s)	431
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	394, 417
BsuI	GTATCC	3 cut(s)	151, 475, 634
BsuRI	GGCC	3 cut(s)	378, 507, 709
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	16, 283
BtsIMutI	CAGTG	2 cut(s)	200, 729
Cac8I	GCNNGC	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	142, 299
CviAII	CATG	4 cut(s)	7, 118, 380, 494
DdeI	CTNAG	3 cut(s)	192, 342, 455
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	2 cut(s)	376, 505
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	2 cut(s)	125, 518
Eco47I	GGWCC	2 cut(s)	142, 299
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoRII	CCWGG	2 cut(s)	137, 517
EcoT14I	CCWWGG	1 cut(s)	493
EcoT38I	GRGCYC	2 cut(s)	125, 518
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	4 cut(s)	10, 121, 383, 497
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	4 cut(s)	6, 117, 379, 493
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	408, 411, 431
FokI	GGATG	2 cut(s)	23, 290
FriOI	GRGCYC	2 cut(s)	125, 518
Fsp4HI	GCNGC	3 cut(s)	408, 411, 431
GluI	GCNGC	3 cut(s)	408, 411, 431
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	3 cut(s)	378, 507, 709
HapII	CCGG	5 cut(s)	84, 145, 154, 180, 476
Hin1II	CATG	4 cut(s)	10, 121, 383, 497
HindIII	AAGCTT	2 cut(s)	344, 920
HinfI	GANTC	8 cut(s)	451, 468, 584, 608, 689, 737, 889, 940
HpaII	CCGG	5 cut(s)	84, 145, 154, 180, 476
HphI	GGTGA	2 cut(s)	376, 713
Hpy166II	GTNNAC	7 cut(s)	80, 99, 310, 467, 669, 704, 883
Hpy188I	TCNGA	2 cut(s)	456, 817
Hpy188III	TCNNGA	4 cut(s)	166, 260, 605, 743
Hpy8I	GTNNAC	7 cut(s)	80, 99, 310, 467, 669, 704, 883
HpyAV	CCTTC	3 cut(s)	221, 455, 802
HpyCH4III	ACNGT	2 cut(s)	322, 360
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	6 cut(s)	80, 218, 255, 394, 433, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 215, 504, 513
HpyF3I	CTNAG	3 cut(s)	192, 342, 455
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	10, 121, 383, 497
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	3 cut(s)	128, 574, 757
Lsp1109I	GCAGC	2 cut(s)	394, 417
LweI	GCATC	4 cut(s)	242, 315, 556, 821
MaeII	ACGT	1 cut(s)	312
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	7 cut(s)	47, 50, 326, 448, 523, 913, 945
MhlI	GDGCHC	3 cut(s)	82, 125, 518
MlsI	TGGCCA	2 cut(s)	378, 507
MluCI	AATT	4 cut(s)	443, 548, 624, 842
MluNI	TGGCCA	2 cut(s)	378, 507
MlyI	GAGTC	5 cut(s)	462, 698, 731, 883, 934
MnlI	CCTC	5 cut(s)	136, 204, 216, 312, 376
Mox20I	TGGCCA	2 cut(s)	378, 507
MscI	TGGCCA	2 cut(s)	378, 507
MseI	TTAA	1 cut(s)	804
Msp20I	TGGCCA	2 cut(s)	378, 507
MspI	CCGG	5 cut(s)	84, 145, 154, 180, 476
MspR9I	CCNGG	5 cut(s)	84, 139, 146, 155, 519
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	139, 519
MwoI	GCNNNNNNNGC	4 cut(s)	52, 215, 504, 513
NciI	CCSGG	3 cut(s)	84, 146, 155
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	4 cut(s)	10, 121, 383, 497
NlaIV	GGNNCC	2 cut(s)	124, 143
NspV	TTCGAA	1 cut(s)	593
PasI	CCCWGGG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	506
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	451, 584, 608
PflFI	GACNNNGTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	409, 412, 432
PleI	GAGTC	5 cut(s)	462, 697, 731, 883, 934
PpsI	GAGTC	5 cut(s)	462, 697, 731, 883, 934
Psp6I	CCWGG	2 cut(s)	137, 517
PspGI	CCWGG	2 cut(s)	137, 517
PspN4I	GGNNCC	2 cut(s)	124, 143
PspPI	GGNCC	2 cut(s)	142, 299
PstI	CTGCAG	1 cut(s)	435
PsyI	GACNNNGTC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	3 cut(s)	408, 411, 431
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	142, 299
SchI	GAGTC	5 cut(s)	462, 698, 731, 883, 934
ScrFI	CCNGG	5 cut(s)	84, 139, 146, 155, 519
SduI	GDGCHC	3 cut(s)	82, 125, 518
SfaNI	GCATC	4 cut(s)	242, 315, 556, 821
SfcI	CTRYAG	1 cut(s)	431
SfuI	TTCGAA	1 cut(s)	593
SinI	GGWCC	2 cut(s)	142, 299
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	443, 548, 624, 842
SsiI	CCGC	1 cut(s)	410
StyD4I	CCNGG	5 cut(s)	82, 137, 144, 153, 517
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	322, 360
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	3 cut(s)	587, 593, 899
TasI	AATT	4 cut(s)	443, 548, 624, 842
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	3 cut(s)	451, 584, 608
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	2 cut(s)	200, 736
TseI	GCWGC	2 cut(s)	407, 430
TspDTI	ATGAA	3 cut(s)	33, 305, 560
TspRI	CASTG	2 cut(s)	200, 736
Tth111I	GACNNNGTC	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	118
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	142, 299
XagI	CCTNNNNNAGG	1 cut(s)	714
XapI	RAATTY	2 cut(s)	548, 842
XcmI	CCANNNNNNNNNTGG	2 cut(s)	500, 515
XmiI	GTMKAC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.