Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011346.1

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Reverse (-)

21337 .. 22180

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011346.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggacatggatgttgatgaaccaaccaaaggcgaagaagaaaagcaaggaaagcccataatcgtagtattgatgggtgcacccggtagtggcaagtccacattctgcgaccaagtcatgggctcctctgttcgtccctgggtccggatccgccaggatactatcaagaatggtaaagccggaacgaaagctcagtgtatagagagtgcgaggagtgcattgagggaaggaaagagtgtgtttatagatggatgcaatctagagaaagagcaaagagatgagtttgtgaagctgggtggtcctcaggtggatgttcatgctgtggtgcttgatcttcctgctaagctttgtatatcgcggtcggttaagcgaacgggacatgagggaaacttgcaaggcggaaaagctgcggctgttgtgaatagaatgctgcagaagaaagaattgccgaatctgagcgaagggtttggtaggatcacttttgccagattgagagcgatgttgaatctgtcattggtacatatagtggactcggtccggtggatacacttccctatggcacttttggtcagaagaacccgagtgcaaaagttcaacctggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

201

Amino Acids

22.23

Weight (kDa)

9.73

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccII	CGCG	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	144
AciI	CCGC	4 cut(s)	151, 358, 399, 410
AclWI	GGATC	3 cut(s)	142, 155, 482
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	4 cut(s)	29, 89, 118, 144
AgsI	TTSAA	2 cut(s)	505, 595
AjnI	CCWGG	3 cut(s)	137, 153, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	4 cut(s)	191, 292, 346, 407
AluI	AGCT	4 cut(s)	191, 292, 346, 407
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	3 cut(s)	142, 155, 482
Ama87I	CYCGRG	1 cut(s)	579
Aor13HI	TCCGGA	1 cut(s)	144
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	407, 430
AspS9I	GGNCC	3 cut(s)	142, 299, 535
AsuC2I	CCSGG	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	579
AvaII	GGWCC	3 cut(s)	142, 299, 535
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	82
BamHI	GGATCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	394, 417
BccI	CCATC	2 cut(s)	67, 242
BciT130I	CCWGG	3 cut(s)	139, 155, 599
BciVI	GTATCC	2 cut(s)	151, 537
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	431
BfuI	GTATCC	2 cut(s)	151, 537
BisI	GCNGC	3 cut(s)	408, 411, 431
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	3 cut(s)	409, 412, 432
Bme1390I	CCNGG	4 cut(s)	84, 139, 155, 599
Bme18I	GGWCC	3 cut(s)	142, 299, 535
BmeT110I	CYCGRG	1 cut(s)	579
BmgT120I	GGNCC	3 cut(s)	142, 299, 535
BmiI	GGNNCC	3 cut(s)	124, 143, 149
BmrFI	CCNGG	4 cut(s)	84, 139, 155, 599
BmsI	GCATC	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	137, 138
BsaWI	WCCGGW	2 cut(s)	144, 537
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 89, 118, 144
Bse21I	CCTNAGG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	3 cut(s)	139, 155, 599
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	3 cut(s)	16, 257, 316
BseLI	CCNNNNNNNGG	4 cut(s)	29, 89, 118, 144
BseMII	CTCAG	3 cut(s)	206, 317, 446
BseRI	GAGGAG	2 cut(s)	115, 226
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	394, 417
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	579
BsiSI	CCGG	4 cut(s)	84, 145, 180, 538
BslFI	GGGAC	2 cut(s)	120, 390
BslI	CCNNNNNNNGG	4 cut(s)	29, 89, 118, 144
BsmFI	GGGAC	2 cut(s)	120, 390
BsmI	GAATGC	1 cut(s)	432
BsoBI	CYCGRG	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	82, 125
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	147, 331, 474
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	4 cut(s)	151, 358, 399, 410
BspCNI	CTCAG	3 cut(s)	205, 316, 447
BspEI	TCCGGA	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	124, 143, 149
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	3 cut(s)	142, 155, 482
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	3 cut(s)	147, 331, 474
Bst2UI	CCWGG	3 cut(s)	139, 155, 599
BstDEI	CTNAG	4 cut(s)	192, 303, 342, 455
BstF5I	GGATG	3 cut(s)	16, 257, 316
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	3 cut(s)	150, 334, 477
BstMBI	GATC	3 cut(s)	147, 331, 474
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 215
BstNI	CCWGG	3 cut(s)	139, 155, 599
BstSCI	CCNGG	4 cut(s)	82, 137, 153, 597
BstSFI	CTRYAG	1 cut(s)	431
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	394, 417
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	2 cut(s)	151, 537
BtgZI	GCGATG	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	16, 257, 316
BtsIMutI	CAGTG	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	142, 299, 535
CpoI	CGGWCCG	1 cut(s)	535
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	518
CspI	CGGWCCG	1 cut(s)	535
CviAII	CATG	4 cut(s)	7, 118, 317, 380
CviJI	RGCY	8 cut(s)	55, 123, 179, 191, 292, 346, 407, 413
CviKI_1	RGCY	8 cut(s)	55, 123, 179, 191, 292, 346, 407, 413
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	4 cut(s)	192, 303, 342, 455
DpnI	GATC	3 cut(s)	149, 333, 476
DpnII	GATC	3 cut(s)	147, 331, 474
EciI	GGCGGA	2 cut(s)	140, 414
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	3 cut(s)	142, 299, 535
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	579
EcoRII	CCWGG	3 cut(s)	137, 153, 597
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	4 cut(s)	10, 121, 320, 383
FaqI	GGGAC	2 cut(s)	120, 390
FatI	CATG	4 cut(s)	6, 117, 316, 379
Fnu4HI	GCNGC	3 cut(s)	408, 411, 431
FokI	GGATG	3 cut(s)	23, 264, 323
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	408, 411, 431
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	3 cut(s)	408, 411, 431
GsaI	CCCAGC	1 cut(s)	296
HapII	CCGG	4 cut(s)	84, 145, 180, 538
Hin1II	CATG	4 cut(s)	10, 121, 320, 383
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	451, 505, 530
HpaII	CCGG	4 cut(s)	84, 145, 180, 538
Hpy166II	GTNNAC	3 cut(s)	80, 99, 529
Hpy188I	TCNGA	2 cut(s)	456, 572
Hpy188III	TCNNGA	3 cut(s)	145, 166, 260
Hpy8I	GTNNAC	3 cut(s)	80, 99, 529
HpyAV	CCTTC	2 cut(s)	221, 455
HpyCH4V	TGCA	6 cut(s)	80, 218, 255, 394, 433, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 215
HpyF3I	CTNAG	4 cut(s)	192, 303, 342, 455
Hsp92II	CATG	4 cut(s)	10, 121, 320, 383
Kpn2I	TCCGGA	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	147, 331, 474
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	2 cut(s)	394, 417
LweI	GCATC	1 cut(s)	242
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	1 cut(s)	260
MalI	GATC	3 cut(s)	149, 333, 476
MboI	GATC	3 cut(s)	147, 331, 474
MboII	GAAGA	5 cut(s)	47, 50, 326, 448, 585
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	82, 125
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	5 cut(s)	136, 204, 216, 312, 376
MroI	TCCGGA	1 cut(s)	144
MseI	TTAA	1 cut(s)	366
MspI	CCGG	4 cut(s)	84, 145, 180, 538
MspR9I	CCNGG	4 cut(s)	84, 139, 155, 599
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	3 cut(s)	139, 155, 599
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	52, 215
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	147, 331, 474
NlaIII	CATG	4 cut(s)	10, 121, 320, 383
NlaIV	GGNNCC	3 cut(s)	124, 143, 149
PasI	CCCWGGG	1 cut(s)	138
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	451, 505
PflFI	GACNNNGTC	2 cut(s)	113, 533
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	409, 412, 432
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Psp6I	CCWGG	3 cut(s)	137, 153, 597
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	3 cut(s)	137, 153, 597
PspN4I	GGNNCC	3 cut(s)	124, 143, 149
PspPI	GGNCC	3 cut(s)	142, 299, 535
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	147
PsyI	GACNNNGTC	2 cut(s)	113, 533
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
Rsr2I	CGGWCCG	1 cut(s)	535
RsrII	CGGWCCG	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	408, 411, 431
Sau3AI	GATC	3 cut(s)	147, 331, 474
Sau96I	GGNCC	3 cut(s)	142, 299, 535
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	4 cut(s)	84, 139, 155, 599
SduI	GDGCHC	2 cut(s)	82, 125
SetI	ASST	6 cut(s)	193, 294, 309, 348, 409, 600
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	1 cut(s)	431
SinI	GGWCC	3 cut(s)	142, 299, 535
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	4 cut(s)	151, 358, 399, 410
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	4 cut(s)	82, 137, 153, 597
TaqII	GACCGA	1 cut(s)	523
TasI	AATT	1 cut(s)	443
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	451, 505
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	2 cut(s)	407, 430
TspDTI	ATGAA	2 cut(s)	33, 305
TspRI	CASTG	1 cut(s)	200
Tth111I	GACNNNGTC	2 cut(s)	113, 533
Van91I	CCANNNNNTGG	1 cut(s)	118
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	3 cut(s)	142, 299, 535
XbaI	TCTAGA	1 cut(s)	259
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.