Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

9821475 .. 9824653

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGGACATGGACGTTGATGAACCAACCAAAGGCGAAGAAGAAAAGCAAGGAAAGCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGCGGCAAGTCCACATTCTGCGAACAAGTCATGGGCTCCTCCGTTCGTCCCTGGGTCCGGGTGTGCCAGGATACCATCAAGAATGGGAAAGCCGGTACGAAAGCTCAGTGTATAGAGAGCGCGAGGAGTGCATTGAGGGAAGGAAAGAGCGTGTTTATAGATAGATGCAATCTGGAGAAAGAGCAAAGAGATGAGTTTGTGAAGCTGGGTGGTCCTCAGGTGGATGTTCATGCTGTGGTGCTTGATCTTCCTGCTAAGCTTTGTATCTCGCGGTCGGTGAAGCGAACTGGCCATGAGGGGAACTTGCAAGGTGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAACTGCCGAATCTGAGCGAAGGGTTTGGTAGGATCACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTCGTACATATAGTGGACTCAGTCCGTTGGATACACTTTCCCATGGTACTTTTGGCCAGAAGAGCCCGGGTGCAAAAGTTCAACTTGGTATAATGAAATTCCTAAAGAAAACAGATGCTCCTACTAATACTGAATCGACTTCAAACAAGGTTCAGGATTCTAATGCTTCTCAAATTACTGGGGGAAAGGATACCAGTGTGAAAGGAACAGGTTTGTTTACTGAAAGTGGTAGTATGGAGTCCAAGAAAGGTGAGCAGCCTGTCGTAGGTTCTGCTGGCACTGACTTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCAAGACTTGTTTTAGTGGACTTGACTCATAAATCGAAGATTTTGTCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACATTGACTCCAAGAGGTTCTTCACATTTGTGGGAGATATCACTAAGCTTCATTCAGAAGGAGGTCTTTGCTGCAATGTGATAGCTAATGCTGCTAACTGGCGACTTAAACCAGGAGGTGGTGGTGTCAATGCTGCAATCTTCAATGCTGGAGGTCCAGCTTTAGAGGTTGCAACCAAAGAACAAGCCAAATCTCTGTATCCTGGGAATGCTGTGGTTGTTCCTCTCCCTTCAACTTCTCCTTTGTTTTGTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAACCCACAGAGACCAAATTATCTTGACAATGACTATGGCAAAGGCTGCAAAATTCTCCATGACACTTATACTTCACTTTTTGAAGGTTTTGCATCAATAGTGAGGACCCAAAAGAAGGTATTTAAGGGAAGCTTTGGAAACCTTCGGTTGAAGCTGCCAGAGTCAAAAGATCACCCTGAGAGTGGGCCTACAAATCACTCTACAAATACCTATCAAAAGATCAAGAGAGAGGATCTTCATGAATCTGAAAGGAACAAACGGAGTAAAGGAGATCAAGCTGAAGCTGAAAACGTCTCTGCTTCTAATGCTAGTAAATCAAACCTCCACTCTGATGGAAGCAAGAATAAATCCTGGGGAACATGGGCCCAGGCTGTCTACAACATTGCCATGCATCCAGAGAAGCAGAGGGATGTAGTACTAGAGATATCAGATGATGTCGTTGTACTAAATGATCTTTATCCAAAGGCACAAATGCATCTCCTGGTGGTAGCGCGACATCCTGGTCTTGATCGCTTGGCAGATGTATGCAAAGAACACATTCAGTTGCTAAGGACAATGCATGCAGTTGGTTTGAAGTGGGCTGAAAAGTTCTTACATGATGATTCAACATTGGTCTTTCGTCTTGGATATCACTCGGAACCATCAATGCGACAGCTGCACCTACATGTAATCAGCCAGGATTTTAATTCAGCACATTTGAAGAACAAGAAACATTGGAATTCCTTTAATACTGCTTTCTTTCGAGACTCTGTGGATGTGCTAGAGGAAGTCAGTAGTGACGGAAAGGCAATACTGAATGATGATGAAAGCCTGATGTCTATGGAGTTACGATGTAATCGATGTAGAAGTGCTCACCCCACCATTCCCAAATTGAAATTGCACATTGGCAGATGTCGAGCCTCCTTCCCGAGCACCCTGCTTGAAAATGGTCGGCTGGTAACTGCACCAAGCAATTCTAGCAATGATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

756

Amino Acids

82.73

Weight (kDa)

8.76

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	22 - 148	6.9e-13	AAA domain
Macro	PF01661	364 - 442	1.7e-06	Macro domain
DcpS_C	PF11969	557 - 671	2.3e-25	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	567 - 660	9.3e-10	HIT domain
zf-C2HE	PF16278	676 - 728	1.3e-08	C2HE / C2H2 / C2HC zinc-binding finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1800
AccB7I	CCANNNNNTGG	1 cut(s)	1121
AccI	GTMKAC	1 cut(s)	1674
AccII	CGCG	3 cut(s)	209, 358, 1792
AciI	CCGC	3 cut(s)	90, 358, 410
AclWI	GGATC	3 cut(s)	482, 1539, 2258
AcoI	YGGCCR	2 cut(s)	376, 568
AcsI	RAATTY	4 cut(s)	611, 905, 1350, 2017
AcuI	CTGAAG	1 cut(s)	1599
AfaI	GTAC	5 cut(s)	184, 520, 562, 1716, 1743
AfiI	CCNNNNNNNGG	9 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414, 1481
AflIII	ACRYGT	2 cut(s)	1279, 1963
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AleI	CACNNNNGTG	1 cut(s)	1031
Alw21I	GWGCWC	3 cut(s)	82, 2152, 2213
Alw26I	GTCTC	3 cut(s)	1303, 1597, 2037
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	3 cut(s)	482, 1539, 2258
Ama87I	CYCGRG	2 cut(s)	580, 2206
AoxI	GGCC	4 cut(s)	376, 568, 1484, 1662
ApaI	GGGCCC	1 cut(s)	1666
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	9 cut(s)	407, 430, 769, 1074, 1094, 1136, 1344, 1453, 1954
ApoI	RAATTY	4 cut(s)	611, 905, 1350, 2017
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
Asp700I	GAANNNNTTC	1 cut(s)	1836
AspLEI	GCGC	2 cut(s)	209, 1792
AspS9I	GGNCC	8 cut(s)	142, 299, 1157, 1289, 1404, 1484, 1662, 1663
AsuC2I	CCSGG	4 cut(s)	84, 146, 581, 582
AsuHPI	GGTGA	5 cut(s)	376, 776, 991, 1463, 2144
AvaI	CYCGRG	2 cut(s)	580, 2206
AvaII	GGWCC	5 cut(s)	142, 299, 1157, 1289, 1404
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	82, 1666
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	2 cut(s)	378, 570
BanII	GRGCYC	3 cut(s)	125, 581, 1666
Bbv12I	GWGCWC	3 cut(s)	82, 2152, 2213
BbvI	GCAGC	9 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440, 1941
BccI	CCATC	5 cut(s)	67, 170, 841, 1625, 1948
BcgI	CGANNNNNNTGC	2 cut(s)	2197, 2231
BciVI	GTATCC	4 cut(s)	151, 538, 697, 1212
BcnI	CCSGG	4 cut(s)	84, 146, 581, 582
BcoDI	GTCTC	3 cut(s)	1303, 1597, 2037
BfaI	CTAG	5 cut(s)	1608, 1718, 2060, 2256, 2269
BfmI	CTRYAG	1 cut(s)	431
BfuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BlpI	GCTNAGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	1716
Bme18I	GGWCC	5 cut(s)	142, 299, 1157, 1289, 1404
BmeT110I	CYCGRG	2 cut(s)	580, 2206
BmgT120I	GGNCC	8 cut(s)	142, 299, 1157, 1289, 1404, 1484, 1662, 1663
BmiI	GGNNCC	6 cut(s)	124, 143, 1291, 1406, 1664, 1938
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
BmuI	ACTGGG	1 cut(s)	702
BpmI	CTGGAG	2 cut(s)	281, 1173
Bpu10I	CCTNAGC	1 cut(s)	1847
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	4 cut(s)	84, 146, 581, 582
Bsa29I	ATCGAT	1 cut(s)	2137
BsaBI	GATNNNNATC	1 cut(s)	1755
BsaI	GGTCTC	1 cut(s)	1303
BsaJI	CCNNGG	9 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650, 1665
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 995, 1025
Bsc4I	CCNNNNNNNGG	9 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414, 1481
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	4 cut(s)	379, 697, 708, 1106
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	3 cut(s)	1084, 1680, 2266
Bse8I	GATNNNNATC	1 cut(s)	1755
BseCI	ATCGAT	1 cut(s)	2137
BseDI	CCNNGG	9 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650, 1665
BseGI	GGATG	5 cut(s)	316, 1690, 1714, 1795, 2059
BseJI	GATNNNNATC	1 cut(s)	1755
BseLI	CCNNNNNNNGG	9 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414, 1481
BseMI	GCAATG	3 cut(s)	1084, 1680, 2266
BseMII	CTCAG	5 cut(s)	206, 317, 446, 547, 1467
BseNI	ACTGG	4 cut(s)	379, 697, 708, 1106
BseRI	GAGGAG	2 cut(s)	115, 226
BseSI	GKGCMC	2 cut(s)	82, 1666
BseXI	GCAGC	9 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440, 1941
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	2 cut(s)	1940, 2226
Bsh1236I	CGCG	3 cut(s)	209, 358, 1792
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	4 cut(s)	378, 570, 1486, 1664
BshVI	ATCGAT	1 cut(s)	2137
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	3 cut(s)	82, 2152, 2213
BsiHKCI	CYCGRG	2 cut(s)	580, 2206
BsiSI	CCGG	4 cut(s)	84, 145, 180, 581
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	9 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414, 1481
BsmAI	GTCTC	3 cut(s)	1303, 1597, 2037
BsmBI	CGTCTC	1 cut(s)	1597
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	2 cut(s)	432, 1216
BsnI	GGCC	4 cut(s)	378, 570, 1486, 1664
Bso31I	GGTCTC	1 cut(s)	1303
BsoBI	CYCGRG	2 cut(s)	580, 2206
Bsp120I	GGGCCC	1 cut(s)	1662
Bsp1286I	GDGCHC	6 cut(s)	82, 125, 581, 1666, 2152, 2213
Bsp143I	GATC	9 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750, 1807, 2263
Bsp1720I	GCTNAGC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	3 cut(s)	90, 358, 410
BspANI	GGCC	4 cut(s)	378, 570, 1486, 1664
BspCNI	CTCAG	5 cut(s)	205, 316, 447, 546, 1468
BspDI	ATCGAT	1 cut(s)	2137
BspFNI	CGCG	3 cut(s)	209, 358, 1792
BspHI	TCATGA	1 cut(s)	1537
BspLI	GGNNCC	6 cut(s)	124, 143, 1291, 1406, 1664, 1938
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	3 cut(s)	482, 1539, 2258
BspQI	GCTCTTC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	1303
BsrDI	GCAATG	3 cut(s)	1084, 1680, 2266
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	4 cut(s)	379, 697, 708, 1106
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	9 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650, 1665
BssMI	GATC	9 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750, 1807, 2263
BssT1I	CCWWGG	2 cut(s)	556, 975
Bst6I	CTCTTC	1 cut(s)	569
BstAPI	GCANNNNNTGC	1 cut(s)	1344
BstC8I	GCNNGC	2 cut(s)	790, 1860
BstDEI	CTNAG	8 cut(s)	192, 303, 342, 455, 533, 1047, 1476, 1847
BstDSI	CCRYGG	1 cut(s)	556
BstEII	GGTNACC	1 cut(s)	1264
BstENI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
BstF5I	GGATG	5 cut(s)	316, 1690, 1714, 1795, 2059
BstFNI	CGCG	3 cut(s)	209, 358, 1792
BstHHI	GCGC	2 cut(s)	209, 1792
BstKTI	GATC	9 cut(s)	334, 477, 1471, 1521, 1534, 1573, 1753, 1810, 2266
BstMAI	GTCTC	3 cut(s)	1303, 1597, 2037
BstMBI	GATC	9 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750, 1807, 2263
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 215, 576, 1094, 1344, 1604, 1954, 2256
BstNSI	RCATGY	3 cut(s)	1283, 1862, 1967
BstPI	GGTNACC	1 cut(s)	1264
BstSFI	CTRYAG	1 cut(s)	431
BstSLI	GKGCMC	2 cut(s)	82, 1666
BstUI	CGCG	3 cut(s)	209, 358, 1792
BstV1I	GCAGC	9 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440, 1941
BstX2I	RGATCY	1 cut(s)	1531
BstXI	CCANNNNNNTGG	1 cut(s)	1631
BstYI	RGATCY	1 cut(s)	1531
Bsu15I	ATCGAT	1 cut(s)	2137
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BsuRI	GGCC	4 cut(s)	378, 570, 1486, 1664
BsuTUI	ATCGAT	1 cut(s)	2137
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	5 cut(s)	316, 1690, 1714, 1795, 2059
BtsIMutI	CAGTG	3 cut(s)	200, 715, 792
Cac8I	GCNNGC	2 cut(s)	790, 1860
CciI	TCATGA	1 cut(s)	1537
CfoI	GCGC	2 cut(s)	209, 1792
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	8 cut(s)	142, 299, 1157, 1289, 1404, 1484, 1662, 1663
Cfr9I	CCCGGG	1 cut(s)	580
ClaI	ATCGAT	1 cut(s)	2137
Csp6I	GTAC	5 cut(s)	183, 519, 561, 1715, 1742
CviQI	GTAC	5 cut(s)	183, 519, 561, 1715, 1742
DdeI	CTNAG	8 cut(s)	192, 303, 342, 455, 533, 1047, 1476, 1847
DpnI	GATC	9 cut(s)	333, 476, 1470, 1520, 1533, 1572, 1752, 1809, 2265
DpnII	GATC	9 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750, 1807, 2263
DrdI	GACNNNNNNGTC	1 cut(s)	1800
DseDI	GACNNNNNNGTC	1 cut(s)	1800
EaeI	YGGCCR	2 cut(s)	376, 568
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	2 cut(s)	556, 975
Eco24I	GRGCYC	3 cut(s)	125, 581, 1666
Eco31I	GGTCTC	1 cut(s)	1303
Eco32I	GATATC	3 cut(s)	1042, 1725, 1928
Eco47I	GGWCC	5 cut(s)	142, 299, 1157, 1289, 1404
Eco57I	CTGAAG	1 cut(s)	1599
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	2 cut(s)	580, 2206
Eco91I	GGTNACC	1 cut(s)	1264
EcoNI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
EcoO109I	RGGNCCY	1 cut(s)	1404
EcoO65I	GGTNACC	1 cut(s)	1264
EcoRI	GAATTC	1 cut(s)	2017
EcoRV	GATATC	3 cut(s)	1042, 1725, 1928
EcoT14I	CCWWGG	2 cut(s)	556, 975
EcoT22I	ATGCAT	3 cut(s)	1692, 1776, 1860
EcoT38I	GRGCYC	3 cut(s)	125, 581, 1666
ErhI	CCWWGG	2 cut(s)	556, 975
Esp3I	CGTCTC	1 cut(s)	1597
FalI	AAGNNNNNCTT	8 cut(s)	582, 614, 1007, 1039, 1053, 1085, 1415, 1447
FaqI	GGGAC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	1674
FokI	GGATG	5 cut(s)	323, 1677, 1721, 1782, 2066
FriOI	GRGCYC	3 cut(s)	125, 581, 1666
FspBI	CTAG	5 cut(s)	1608, 1718, 2060, 2256, 2269
GlaI	GCGC	2 cut(s)	208, 1791
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	2 cut(s)	281, 1173
HaeIII	GGCC	4 cut(s)	378, 570, 1486, 1664
HapII	CCGG	4 cut(s)	84, 145, 180, 581
HhaI	GCGC	2 cut(s)	209, 1792
Hin6I	GCGC	2 cut(s)	207, 1790
HinP1I	GCGC	2 cut(s)	207, 1790
HindIII	AAGCTT	4 cut(s)	344, 990, 1049, 1429
HpaII	CCGG	4 cut(s)	84, 145, 180, 581
HphI	GGTGA	5 cut(s)	376, 776, 991, 1463, 2144
Hpy166II	GTNNAC	6 cut(s)	80, 99, 530, 732, 946, 1675
Hpy188I	TCNGA	7 cut(s)	456, 880, 1060, 1546, 1630, 1729, 1936
Hpy8I	GTNNAC	6 cut(s)	80, 99, 530, 732, 946, 1675
HpyCH4IV	ACGT	2 cut(s)	12, 1590
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 215, 576, 1094, 1344, 1604, 1954, 2256
HpyF3I	CTNAG	8 cut(s)	192, 303, 342, 455, 533, 1047, 1476, 1847
HpySE526I	ACGT	2 cut(s)	12, 1590
HspAI	GCGC	2 cut(s)	207, 1790
Kzo9I	GATC	9 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750, 1807, 2263
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	3 cut(s)	128, 637, 820
Lsp1109I	GCAGC	9 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440, 1941
LweI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
MaeI	CTAG	5 cut(s)	1608, 1718, 2060, 2256, 2269
MaeII	ACGT	2 cut(s)	12, 1590
MaeIII	GTNAC	4 cut(s)	1264, 2075, 2124, 2236
MalI	GATC	9 cut(s)	333, 476, 1470, 1520, 1533, 1572, 1752, 1809, 2265
MboI	GATC	9 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750, 1807, 2263
MflI	RGATCY	1 cut(s)	1531
MhlI	GDGCHC	6 cut(s)	82, 125, 581, 1666, 2152, 2213
MlsI	TGGCCA	2 cut(s)	378, 570
MluNI	TGGCCA	2 cut(s)	378, 570
MlyI	GAGTC	6 cut(s)	525, 761, 946, 1004, 1469, 2039
MmeI	TCCRAC	1 cut(s)	522
Mox20I	TGGCCA	2 cut(s)	378, 570
Mph1103I	ATGCAT	3 cut(s)	1692, 1776, 1860
MroXI	GAANNNNTTC	1 cut(s)	1836
MscI	TGGCCA	2 cut(s)	378, 570
MseI	TTAA	4 cut(s)	1110, 1422, 1983, 2025
MslI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1962
Msp20I	TGGCCA	2 cut(s)	378, 570
MspA1I	CMGCKG	1 cut(s)	1954
MspI	CCGG	4 cut(s)	84, 145, 180, 581
Mva1269I	GAATGC	2 cut(s)	432, 1216
MvnI	CGCG	3 cut(s)	209, 358, 1792
MwoI	GCNNNNNNNGC	8 cut(s)	52, 215, 576, 1094, 1344, 1604, 1954, 2256
NciI	CCSGG	4 cut(s)	84, 146, 581, 582
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	9 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750, 1807, 2263
NlaIV	GGNNCC	6 cut(s)	124, 143, 1291, 1406, 1664, 1938
NmuCI	GTSAC	1 cut(s)	2075
NsiI	ATGCAT	3 cut(s)	1692, 1776, 1860
NspI	RCATGY	3 cut(s)	1283, 1862, 1967
OliI	CACNNNNGTG	1 cut(s)	1031
PaeI	GCATGC	1 cut(s)	1862
PagI	TCATGA	1 cut(s)	1537
PasI	CCCWGGG	1 cut(s)	138
PciI	ACATGT	2 cut(s)	1279, 1963
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	2134
PctI	GAATGC	2 cut(s)	432, 1216
PdmI	GAANNNNTTC	1 cut(s)	1836
PfeI	GAWTC	6 cut(s)	451, 506, 647, 671, 1541, 1901
PflFI	GACNNNGTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	1121
PleI	GAGTC	6 cut(s)	525, 760, 946, 1004, 1468, 2039
PpsI	GAGTC	6 cut(s)	525, 760, 946, 1004, 1468, 2039
PpuMI	RGGWCCY	1 cut(s)	1404
PscI	ACATGT	2 cut(s)	1279, 1963
Psp5II	RGGWCCY	1 cut(s)	1404
PspEI	GGTNACC	1 cut(s)	1264
PspFI	CCCAGC	1 cut(s)	292
PspN4I	GGNNCC	6 cut(s)	124, 143, 1291, 1406, 1664, 1938
PspOMI	GGGCCC	1 cut(s)	1662
PspPI	GGNCC	8 cut(s)	142, 299, 1157, 1289, 1404, 1484, 1662, 1663
PspPPI	RGGWCCY	1 cut(s)	1404
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	1531
PsyI	GACNNNGTC	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	1954
RsaI	GTAC	5 cut(s)	184, 520, 562, 1716, 1743
RsaNI	GTAC	5 cut(s)	183, 519, 561, 1715, 1742
RseI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1962
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	1110, 1422, 1983, 2025
Sau3AI	GATC	9 cut(s)	331, 474, 1468, 1518, 1531, 1570, 1750, 1807, 2263
Sau96I	GGNCC	8 cut(s)	142, 299, 1157, 1289, 1404, 1484, 1662, 1663
ScaI	AGTACT	1 cut(s)	1716
SchI	GAGTC	6 cut(s)	525, 761, 946, 1004, 1469, 2039
SduI	GDGCHC	6 cut(s)	82, 125, 581, 1666, 2152, 2213
SfaNI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
SfcI	CTRYAG	1 cut(s)	431
SinI	GGWCC	5 cut(s)	142, 299, 1157, 1289, 1404
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1962
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SphI	GCATGC	1 cut(s)	1862
SsiI	CCGC	3 cut(s)	90, 358, 410
SspMI	CTAG	5 cut(s)	1608, 1718, 2060, 2256, 2269
StyI	CCWWGG	2 cut(s)	556, 975
TaiI	ACGT	2 cut(s)	15, 1593
TaqI	TCGA	5 cut(s)	650, 962, 2041, 2137, 2194
TatI	WGTACW	2 cut(s)	1714, 1741
TauI	GCSGC	2 cut(s)	93, 413
TfiI	GAWTC	6 cut(s)	451, 506, 647, 671, 1541, 1901
Tru1I	TTAA	4 cut(s)	1110, 1422, 1983, 2025
Tru9I	TTAA	4 cut(s)	1110, 1422, 1983, 2025
TscAI	CASTG	3 cut(s)	200, 715, 799
TseFI	GTSAC	1 cut(s)	2075
TseI	GCWGC	9 cut(s)	407, 430, 769, 1074, 1094, 1136, 1344, 1453, 1954
Tsp45I	GTSAC	1 cut(s)	2075
TspDTI	ATGAA	8 cut(s)	33, 305, 623, 1043, 1313, 1526, 1554, 2118
TspGWI	ACGGA	4 cut(s)	118, 528, 1573, 2094
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	3 cut(s)	200, 715, 799
Tth111I	GACNNNGTC	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	1121
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	5 cut(s)	142, 299, 1157, 1289, 1404
XagI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
XapI	RAATTY	4 cut(s)	611, 905, 1350, 2017
XceI	RCATGY	3 cut(s)	1283, 1862, 1967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmaI	CCCGGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	1674
XmnI	GAANNNNTTC	1 cut(s)	1836
XspI	CTAG	5 cut(s)	1608, 1718, 2060, 2256, 2269
ZrmI	AGTACT	1 cut(s)	1716
Zsp2I	ATGCAT	3 cut(s)	1692, 1776, 1860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.