Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003624.1

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

35317 .. 36888

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003624.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggatgttgatgaaccaaccaaaggttcggttttgtgttggaaagtatcggttcagtgcaaagctcgacccgaattacagtttatcggatcgggctcgagcttgatattttccgggaccgaaagacccgaagggatcgatttctcctccatatcagcctctctcactctcctctcaagccagctcctcctcctcctcctcctaaacctttcccctccatttgcaaacctaaatgctccgacgacccgaaacaacaacccatcaaccacagctgcggaaagagtgtgttctatctgcaatctagagaaagagcaaagagatgagcttgtgaagctcggtggtcctcaagtggatgttcatgctgtggtgcttgatcttcctgctaagctttgtatatcgcggtcggtgaagcgaacgggatatgagggaaacttgcaaggcggaaaagctgcgactattgtgaatagaatgctgcaaaagaaagaattgccgaatctgagcgaagggtttggtaggatcactttttgccagaatgcgagtgatgttgaatctgccctttgtacatatagtggactcggtccgttggatacgcttccccatggcacttttggccagaagagcccaggtgcaaaagttcaacttggtataatgaaattcgtaaagaaaacatatgctcctgctaatactgaatcgacttcgaacaaggttctggattccattacttttcaaattactgggggaagggataccagttataaaggaacaggtttgtttactgcaagtggtattatttttcatgaagggaataaagttgcaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

273

Amino Acids

29.2

Weight (kDa)

8.64

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AccII	CGCG	1 cut(s)	400
AciI	CCGC	3 cut(s)	275, 400, 441
AclWI	GGATC	3 cut(s)	97, 143, 524
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	1 cut(s)	653
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	548, 638, 728
AjnI	CCWGG	1 cut(s)	622
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AluBI	AGCT	8 cut(s)	65, 102, 184, 272, 325, 334, 388, 449
AluI	AGCT	8 cut(s)	65, 102, 184, 272, 325, 334, 388, 449
AlwI	GGATC	3 cut(s)	97, 143, 524
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	3 cut(s)	272, 449, 472
ApoI	RAATTY	1 cut(s)	653
AspS9I	GGNCC	3 cut(s)	117, 341, 578
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	418
AsuII	TTCGAA	1 cut(s)	698
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	3 cut(s)	117, 341, 578
BalI	TGGCCA	1 cut(s)	612
BanII	GRGCYC	2 cut(s)	98, 623
BbvI	GCAGC	3 cut(s)	259, 436, 459
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	624
BciVI	GTATCC	2 cut(s)	580, 739
BcnI	CCSGG	1 cut(s)	115
BfaI	CTAG	1 cut(s)	302
BfuI	GTATCC	2 cut(s)	580, 739
BisI	GCNGC	3 cut(s)	273, 450, 473
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	3 cut(s)	274, 451, 474
Bme1390I	CCNGG	2 cut(s)	115, 624
Bme18I	GGWCC	3 cut(s)	117, 341, 578
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	117, 341, 578
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	2 cut(s)	115, 624
BmrI	ACTGGG	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	744
Bpu1102I	GCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	698
BpuEI	CTTGAG	2 cut(s)	160, 330
BpuMI	CCSGG	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	598, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	739, 750
BseBI	CCWGG	1 cut(s)	624
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	598, 622
BseGI	GGATG	2 cut(s)	10, 358
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	739, 750
BseRI	GAGGAG	7 cut(s)	136, 161, 176, 179, 182, 185, 188
BseXI	GCAGC	3 cut(s)	259, 436, 459
Bsh1236I	CGCG	1 cut(s)	400
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	612
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	474, 538
BsnI	GGCC	1 cut(s)	612
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	98, 623
Bsp1407I	TGTACA	1 cut(s)	560
Bsp143I	GATC	4 cut(s)	89, 135, 373, 516
Bsp1720I	GCTNAGC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	3 cut(s)	275, 400, 441
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	1 cut(s)	489
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	3 cut(s)	97, 143, 524
BspQI	GCTCTTC	1 cut(s)	611
BspT104I	TTCGAA	1 cut(s)	698
BsrGI	TGTACA	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	739, 750
BssECI	CCNNGG	2 cut(s)	598, 622
BssMI	GATC	4 cut(s)	89, 135, 373, 516
BssT1I	CCWWGG	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	384, 497
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	10, 358
BstFNI	CGCG	1 cut(s)	400
BstKTI	GATC	4 cut(s)	92, 138, 376, 519
BstMBI	GATC	4 cut(s)	89, 135, 373, 516
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 609, 618
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	113, 622
BstUI	CGCG	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	259, 436, 459
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	580, 739
BsuRI	GGCC	1 cut(s)	612
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	10, 358
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	182
CciI	TCATGA	1 cut(s)	796
Cfr13I	GGNCC	3 cut(s)	117, 341, 578
ClaI	ATCGAT	1 cut(s)	138
CpoI	CGGWCCG	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	561
CspI	CGGWCCG	1 cut(s)	578
CviAII	CATG	3 cut(s)	359, 599, 797
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	384, 497
DpnI	GATC	4 cut(s)	91, 137, 375, 518
DpnII	GATC	4 cut(s)	89, 135, 373, 516
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EciI	GGCGGA	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	98, 623
Eco47I	GGWCC	3 cut(s)	117, 341, 578
Eco88I	CYCGRG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	598
EcoT38I	GRGCYC	2 cut(s)	98, 623
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	3 cut(s)	362, 602, 800
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	3 cut(s)	358, 598, 796
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	3 cut(s)	273, 450, 473
FokI	GGATG	2 cut(s)	17, 365
FriOI	GRGCYC	2 cut(s)	98, 623
Fsp4HI	GCNGC	3 cut(s)	273, 450, 473
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	3 cut(s)	273, 450, 473
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	3 cut(s)	362, 602, 800
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	5 cut(s)	493, 548, 573, 689, 713
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	2 cut(s)	572, 774
Hpy188I	TCNGA	3 cut(s)	89, 240, 498
Hpy188III	TCNNGA	3 cut(s)	302, 710, 797
Hpy8I	GTNNAC	2 cut(s)	572, 774
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	125, 497, 735, 794
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	8 cut(s)	60, 224, 297, 436, 475, 629, 779, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 609, 618
HpyF3I	CTNAG	2 cut(s)	384, 497
Hsp92II	CATG	3 cut(s)	362, 602, 800
Kzo9I	GATC	4 cut(s)	89, 135, 373, 516
LguI	GCTCTTC	1 cut(s)	611
LmnI	GCTCC	3 cut(s)	189, 241, 679
Lsp1109I	GCAGC	3 cut(s)	259, 436, 459
MaeI	CTAG	1 cut(s)	302
MalI	GATC	4 cut(s)	91, 137, 375, 518
MboI	GATC	4 cut(s)	89, 135, 373, 516
MboII	GAAGA	2 cut(s)	368, 628
MhlI	GDGCHC	2 cut(s)	98, 623
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	5 cut(s)	74, 485, 653, 729, 817
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	3 cut(s)	20, 263, 564
Mox20I	TGGCCA	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	612
Msp20I	TGGCCA	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	115, 624
Mva1269I	GAATGC	2 cut(s)	474, 538
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	331, 609, 618
NciI	CCSGG	1 cut(s)	115
NcoI	CCATGG	1 cut(s)	598
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	4 cut(s)	89, 135, 373, 516
NlaIII	CATG	3 cut(s)	362, 602, 800
NlaIV	GGNNCC	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	698
PaeR7I	CTCGAG	1 cut(s)	97
PagI	TCATGA	1 cut(s)	796
PciSI	GCTCTTC	1 cut(s)	611
PctI	GAATGC	2 cut(s)	474, 538
PfeI	GAWTC	4 cut(s)	493, 548, 689, 713
PflFI	GACNNNGTC	1 cut(s)	576
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	274, 451, 474
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
PsiI	TTATAA	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	3 cut(s)	117, 341, 578
PspXI	VCTCGAGB	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	576
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
Rsr2I	CGGWCCG	1 cut(s)	578
RsrII	CGGWCCG	1 cut(s)	578
SapI	GCTCTTC	1 cut(s)	611
SatI	GCNGC	3 cut(s)	273, 450, 473
Sau3AI	GATC	4 cut(s)	89, 135, 373, 516
Sau96I	GGNCC	3 cut(s)	117, 341, 578
SchI	GAGTC	1 cut(s)	567
ScrFI	CCNGG	2 cut(s)	115, 624
SduI	GDGCHC	2 cut(s)	98, 623
Sfr274I	CTCGAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	698
SinI	GGWCC	3 cut(s)	117, 341, 578
SlaI	CTCGAG	1 cut(s)	97
SmlI	CTYRAG	3 cut(s)	97, 175, 345
SmoI	CTYRAG	3 cut(s)	97, 175, 345
Sse9I	AATT	5 cut(s)	74, 485, 653, 729, 817
SsiI	CCGC	3 cut(s)	275, 400, 441
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	113, 622
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	5 cut(s)	67, 98, 138, 692, 698
TaqII	GACCGA	2 cut(s)	134, 566
TasI	AATT	5 cut(s)	74, 485, 653, 729, 817
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	4 cut(s)	493, 548, 689, 713
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	3 cut(s)	272, 449, 472
TspDTI	ATGAA	5 cut(s)	27, 347, 665, 785, 813
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	576
VpaK11BI	GGWCC	3 cut(s)	117, 341, 578
XapI	RAATTY	1 cut(s)	653
XbaI	TCTAGA	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.