Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

10177332 .. 10182876

Gene Structure 5545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42885

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTGTTCGATGAAATACCTCACTGAGTTTGAACCTATAATTTCAGGAGTTATTGTAGATACTATCAAGAATGGTAAAGCCGGAACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTGCATTGAGGGAAGGAAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAACAAAGGGATGAGTTTGTGAAGCTGGTTGGTCCTCAAGTGGACGTTCATACTGTGATGCTTGATCTTCCTGCTAAGCTTTGTATATCACGGTTGGTGAAGCGAACTGGCCATGAGGGGAACTTGCAAGGCAGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGGTAGGATCACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTTGTAGTTTTGTACATATAGTAGACTCTTTCCGGTGGATACACTTCCCCATGGCACTTTTGGCCAGAAGAGCCCTGGTGCAAAAGTTCAACTTGGATTCTAATGCTTTTCAAATTATTGGGGGAAAGGATACCAGTTTGAAAGGAACAGGTTTGTTTACTGAAAGTTGTAGTATGGAGTCCAAGAAAGGTGAACGGCCTGTTGTAGGTTCTGCTGGCACTGATGACTCTCTTGACAATGCTCCCACTCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTATGACATTAAGAAGGCATCTGACATTATTGTAGAGAAAGTTGTAAAATTTGTAAATAAACTTGGAAATGCCAGACTTTTTTTAGTGGACTTGACTCATAAATCGAAGATTTTGTCTTTGATAAAGCTTCACAGAAAAACATTGACTCCAACAGGTTCTTCACATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

289

Amino Acids

31.91

Weight (kDa)

9.19

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	29 - 116	4e-08	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	2 cut(s)	277, 477
AcsI	RAATTY	1 cut(s)	746
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgsI	TTSAA	5 cut(s)	32, 407, 505, 527, 556
AjnI	CCWGG	1 cut(s)	489
AjuI	GAANNNNNNNTTGG	1 cut(s)	841
AluBI	AGCT	5 cut(s)	92, 193, 247, 308, 826
AluI	AGCT	5 cut(s)	92, 193, 247, 308, 826
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	3 cut(s)	277, 477, 611
ApeKI	GCWGC	2 cut(s)	308, 331
ApoI	RAATTY	1 cut(s)	746
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	277, 617
AvaII	GGWCC	1 cut(s)	200
BalI	TGGCCA	2 cut(s)	279, 479
BanII	GRGCYC	1 cut(s)	490
BbvI	GCAGC	2 cut(s)	295, 318
BccI	CCATC	1 cut(s)	682
BceAI	ACGGC	1 cut(s)	626
BciT130I	CCWGG	1 cut(s)	491
BciVI	GTATCC	2 cut(s)	447, 538
BfmI	CTRYAG	1 cut(s)	332
BfuI	GTATCC	2 cut(s)	447, 538
BisI	GCNGC	3 cut(s)	309, 312, 332
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	3 cut(s)	310, 313, 333
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	3 cut(s)	143, 216, 725
BpmI	CTGGAG	1 cut(s)	182
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	465, 489
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 829, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse1I	ACTGG	2 cut(s)	280, 549
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	465, 489
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMII	CTCAG	3 cut(s)	15, 107, 347
BseNI	ACTGG	2 cut(s)	280, 549
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	295, 318
BshFI	GGCC	3 cut(s)	279, 479, 613
BsiSI	CCGG	2 cut(s)	81, 448
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	279, 479, 613
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	232, 375
Bsp1720I	GCTNAGC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	3 cut(s)	279, 479, 613
BspCNI	CTCAG	3 cut(s)	16, 106, 348
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	280, 549
BssECI	CCNNGG	2 cut(s)	465, 489
BssMI	GATC	2 cut(s)	232, 375
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	223, 261
Bst6I	CTCTTC	1 cut(s)	478
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	631
BstDEI	CTNAG	4 cut(s)	24, 93, 243, 356
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	235, 378
BstMBI	GATC	2 cut(s)	232, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 476, 485
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	295, 318
BsuI	GTATCC	2 cut(s)	447, 538
BsuRI	GGCC	3 cut(s)	279, 479, 613
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	3 cut(s)	21, 101, 633
Cac8I	GCNNGC	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	2 cut(s)	281, 466
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	4 cut(s)	24, 93, 243, 356
DpnI	GATC	2 cut(s)	234, 377
DpnII	GATC	2 cut(s)	232, 375
EaeI	YGGCCR	2 cut(s)	277, 477
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	2 cut(s)	284, 469
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	2 cut(s)	280, 465
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	309, 312, 332
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	3 cut(s)	309, 312, 332
GluI	GCNGC	3 cut(s)	309, 312, 332
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	279, 479, 613
HapII	CCGG	2 cut(s)	81, 448
Hin1II	CATG	2 cut(s)	284, 469
HindIII	AAGCTT	2 cut(s)	245, 824
HinfI	GANTC	8 cut(s)	352, 407, 440, 512, 593, 641, 793, 844
HpaII	CCGG	2 cut(s)	81, 448
HphI	GGTGA	2 cut(s)	277, 617
Hpy166II	GTNNAC	5 cut(s)	211, 439, 573, 608, 787
Hpy188I	TCNGA	2 cut(s)	357, 721
Hpy188III	TCNNGA	4 cut(s)	45, 67, 161, 647
Hpy8I	GTNNAC	5 cut(s)	211, 439, 573, 608, 787
HpyAV	CCTTC	3 cut(s)	122, 356, 706
HpyCH4III	ACNGT	2 cut(s)	223, 261
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	119, 156, 295, 334, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 476, 485
HpyF3I	CTNAG	4 cut(s)	24, 93, 243, 356
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	284, 469
Kzo9I	GATC	2 cut(s)	232, 375
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	2 cut(s)	295, 318
LweI	GCATC	3 cut(s)	143, 216, 725
MaeII	ACGT	1 cut(s)	213
MalI	GATC	2 cut(s)	234, 377
MboI	GATC	2 cut(s)	232, 375
MboII	GAAGA	5 cut(s)	227, 349, 495, 817, 849
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	2 cut(s)	279, 479
MluCI	AATT	4 cut(s)	39, 344, 528, 746
MluNI	TGGCCA	2 cut(s)	279, 479
MlyI	GAGTC	5 cut(s)	434, 602, 635, 787, 838
MnlI	CCTC	5 cut(s)	29, 105, 117, 213, 277
Mox20I	TGGCCA	2 cut(s)	279, 479
MscI	TGGCCA	2 cut(s)	279, 479
MseI	TTAA	1 cut(s)	708
Msp20I	TGGCCA	2 cut(s)	279, 479
MspI	CCGG	2 cut(s)	81, 448
MspR9I	CCNGG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	3 cut(s)	116, 476, 485
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	2 cut(s)	232, 375
NlaIII	CATG	2 cut(s)	284, 469
PciSI	GCTCTTC	1 cut(s)	478
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	352, 407, 512
PkrI	GCNGC	3 cut(s)	310, 313, 333
PleI	GAGTC	5 cut(s)	434, 601, 635, 787, 838
PpsI	GAGTC	5 cut(s)	434, 601, 635, 787, 838
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	336
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	3 cut(s)	309, 312, 332
Sau3AI	GATC	2 cut(s)	232, 375
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	5 cut(s)	434, 602, 635, 787, 838
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	3 cut(s)	143, 216, 725
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	39, 344, 528, 746
SsiI	CCGC	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	223, 261
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	8, 803
TasI	AATT	4 cut(s)	39, 344, 528, 746
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	352, 407, 512
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	3 cut(s)	28, 101, 640
TseI	GCWGC	2 cut(s)	308, 331
TspDTI	ATGAA	2 cut(s)	26, 206
TspRI	CASTG	3 cut(s)	28, 101, 640
VpaK11BI	GGWCC	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	618
XapI	RAATTY	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	2 cut(s)	472, 487
XmiI	GTMKAC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.