Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Reverse (-)

18736381 .. 18737133

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAATGCGTTGAAGGATGGGAAGAGTGTGTTTATAGATAGGTGTAATGTAGAGAAAGAACAAGGGGATGAATTTGTGAAGCTTCGTGGTAGTTCCCAAGTTGATGTTCATGCTGTGGTGCTTGATCTTCCTGCCAAGCTTTGTATATTGCGGTATGTGAAGCGAACTGGCCATGAAGGAAACGTGCAAGGCAGGAAAGCTGTGGTGATTGTGAATAGAATGCTGCAGAACAAAGAACTGCCTAAGCTGAGTGAAGGGTTTGCTAGAATTACTTGTTGCCAGAGTCAGAGTGATGTTCAATCTGTGGTTGATGCATATAGTGGACTTCGTCCGTTGGATACACTTCCCAATGGTTATTTTGGTCAGAAGAACCCCGGTGTAAAAATTCAACTAGGTATAATGAAGTTCTTAAAGAAAACAGATGGTCCTGCCAATACTGAATCAACTTCAAAGAGTGTACCGGATTCTAATGCTTCTCAAATTACTGAAGAAAAGGAAACCTCTTTGAAAGGAACAGGTTCACTTTCTGAAAAATCTGGTAAGGAGTCAAAGGAAGGTGAAGAGCTAGTTGTAGGCTCTGTTGGTGGTGATGGTTCTCTAAACGATGCTTCCACTCTGGCATTTCCTTCCATTTCAACAGCAGACTTTCAATTTGACCTTGCAAAGGCATCTGATATTATTGTTGAGAAAGTTAAAGAATTTAGAAATAAGCTTGGAAATTCTAGACTTGTTTTAGTGGAATTGAGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

251

Amino Acids

27.08

Weight (kDa)

7.62

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	4 cut(s)	71, 384, 698, 718
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	664
AgsI	TTSAA	7 cut(s)	13, 299, 389, 450, 508, 636, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	6 cut(s)	82, 139, 200, 247, 565, 712
AluI	AGCT	6 cut(s)	82, 139, 200, 247, 565, 712
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	4 cut(s)	71, 384, 698, 718
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
Asp700I	GAANNNNTTC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	217, 569, 599
AvaII	GGWCC	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	3 cut(s)	11, 416, 584
BciVI	GTATCC	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	375
BfaI	CTAG	4 cut(s)	264, 392, 566, 723
BfmI	CTRYAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	3 cut(s)	301, 595, 677
Bpu10I	CCTNAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	373
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	22, 73
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	375, 461
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmI	GAATGC	2 cut(s)	10, 225
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	228
BspQI	GCTCTTC	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	17, 555
BstDEI	CTNAG	2 cut(s)	243, 248
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	2 cut(s)	22, 73
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	22, 73
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	2 cut(s)	110, 173
CviJI	RGCY	8 cut(s)	82, 139, 171, 200, 247, 565, 576, 712
CviKI_1	RGCY	8 cut(s)	82, 139, 171, 200, 247, 565, 576, 712
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	2 cut(s)	243, 248
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	17, 555
EarI	CTCTTC	2 cut(s)	17, 555
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoT22I	ATGCAT	1 cut(s)	316
FaeI	CATG	2 cut(s)	113, 176
FaiI	YATR	8 cut(s)	35, 111, 146, 156, 174, 316, 318, 398
FatI	CATG	2 cut(s)	109, 172
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	2 cut(s)	29, 80
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	4 cut(s)	264, 392, 566, 723
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	375, 461
Hin1II	CATG	2 cut(s)	113, 176
HindIII	AAGCTT	3 cut(s)	80, 137, 710
HinfI	GANTC	5 cut(s)	283, 440, 464, 545, 745
HpaII	CCGG	2 cut(s)	375, 461
HphI	GGTGA	3 cut(s)	217, 569, 599
Hpy166II	GTNNAC	3 cut(s)	323, 458, 521
Hpy188I	TCNGA	4 cut(s)	288, 366, 529, 673
Hpy188III	TCNNGA	1 cut(s)	723
Hpy8I	GTNNAC	3 cut(s)	323, 458, 521
HpyAV	CCTTC	5 cut(s)	7, 170, 248, 548, 636
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	187, 226, 314, 662
HpyF3I	CTNAG	2 cut(s)	243, 248
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	113, 176
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	555
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	3 cut(s)	301, 595, 677
MaeI	CTAG	4 cut(s)	264, 392, 566, 723
MaeII	ACGT	1 cut(s)	183
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	5 cut(s)	34, 119, 379, 500, 572
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	8 cut(s)	71, 267, 384, 480, 650, 698, 718, 740
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	292, 554
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	1 cut(s)	511
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	3 cut(s)	410, 693, 751
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	2 cut(s)	375, 461
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	2 cut(s)	10, 225
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	113, 176
NsiI	ATGCAT	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	555
PctI	GAATGC	2 cut(s)	10, 225
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	440, 464
PflFI	GACNNNGTC	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	2 cut(s)	291, 553
PpsI	GAGTC	2 cut(s)	291, 553
PspPI	GGNCC	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	228
PsyI	GACNNNGTC	1 cut(s)	327
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	410, 693, 751
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	2 cut(s)	292, 554
ScrFI	CCNGG	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	301, 595, 677
SfcI	CTRYAG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	425
Sse9I	AATT	8 cut(s)	71, 267, 384, 480, 650, 698, 718, 740
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	4 cut(s)	264, 392, 566, 723
StyD4I	CCNGG	1 cut(s)	373
TaiI	ACGT	1 cut(s)	186
TasI	AATT	8 cut(s)	71, 267, 384, 480, 650, 698, 718, 740
TfiI	GAWTC	2 cut(s)	440, 464
Tru1I	TTAA	3 cut(s)	410, 693, 751
Tru9I	TTAA	3 cut(s)	410, 693, 751
TseI	GCWGC	1 cut(s)	223
TspDTI	ATGAA	5 cut(s)	17, 84, 98, 189, 416
TspGWI	ACGGA	1 cut(s)	321
Tth111I	GACNNNGTC	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	4 cut(s)	71, 384, 698, 718
XbaI	TCTAGA	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	4 cut(s)	264, 392, 566, 723
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.