Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00141

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

16466 .. 19494

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGGACATGGACGTTGATGAACCAACCAAAGGCCAACAAGAAAAGCAAGGAAAGCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGCGGCAAGTCCACATTCTGCGAACAAGTCATGGGCTCCTCCGTTCGTCCCTGGGTCCGGGTCTGCCAGGATACTATCAAAAATGGGAAAGCCGGAACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTGCATTGCGGGAAGGAAAGAGTGTGTTTATAGATAGATGCAATCTGGAGAAAGAGCAAAGAGATGAGTTTGTGAAGCTGGGTGGTCCTCAGGTGGATGTTCATGCTGTGGTGCTTGATCTTCCTTCTAAGCTTTGTATCTCGCGGTCGGTGAAGCGAACTGGCCATGAGGGGAACTTGCAAGGTGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGGTAGGATCACTTTTTGCCAGAATGAGAGTGATGTAGAATCTGCCATTCGTACATATAGTGGACTCGGTCCGTTGGATACACTTCCCCATGGTACTTTTGGCCAGAAGAGCCCGGGTGCAAAAGTTCAACTTGGTATAATGAAATTCCTAAAGAAAACAGATGCTCCTACTAATACTGAATCGACTTCGAACAAGGTTCAGGATTCTAATGCTTCTCAAATTACTGGGGGAAAGGATACCAGTGTGAAAGGAACAGGTTTGTTTACTGAAAGTGGTAGTATGGAGTCCAAGAAAGGTGAGCAGCCTGTCGTAGGTTCTGCTGGCACTGACGTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCAAGACTTGTTTTAGTGGACTTGACTCATAAATCGAAGATTTTGTCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACATTGACTCCAAGAGGTTCTTCACATTTGTGGGAGATATCACTAAGCTTCATTCAGAAGGAGGTCTTTGCTGCAATGTGATAGCTAATGCTGCTAACTGGCGACTTAAACCAGGAGGTGGTGGTGTCAATGCTGCAATCTTCAATGCTGGAGGTCCAGCTTTAGAGGTTGCAACCAAAGAACAAGCCAAATCTCTGTATCCTGGGAATGCTGTGGTTGTTCCTCTCCCTTCAACTTCTCCTTTGTTTTGTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAACCCACAGAGACCAAATTATCTTGACAATGACTATAGCAAAGGCTGCAAAATTCTCCATGACACTTATACTTCACTTTTTGAAGGTTTTGCATCAATAGTGAGGACCCAAAAGAAGGTATTTAAGGGAAGCTTTGGAAACCTTCGGTTGAAGCTGCCAGAGTCAAAAGATCACTCTGAGAGTGGGCCTACAAATCACTCTACAAATACCTATCAAAAGATCAAGAGAGAGGATCTTCATGAATCTGAAAGGAACAAACGGAGTAAAGGAGATCAAGCTGAAGCTGAAAACGTCTCTGATTCTAATGCTAGTAAATCAAACCTCCACTCTGATGGAAGCAAGAATAAATCCTGGGGAACATGGGCCCAGGCTGTCTACAACATTGCCATGCATCCAGAGAAGCAGAGGGATGTAGTACTAGAGATATCAGATGATTTGCTAAGGACAATGCATGCGGTTGGTTTGAAGTGGGCTGAAAAGTTCTTACATGATGATTCAACATTGGTCTTTCGTCTTGGATATCACTCGGAACCATCAATGCGACAGCTGCACCTACATGTAATCAGCCAAGATTTTAATTCAGCACATTTGAAGAACAAGAAACATTGGAATTCCTTTAATACTGCTTTCTTTCGAGACTCAGTGGATGTGCTAGAGGAAGTCAGTAGTGACGGAAAGGCAATACTGAATGATGATGAAAGCCTGATGTCTATGGAATTGCGATGTAATCGATGTAGAAGTGCTCACCCCACCATTCCCAAATTGAAATTGCACATTGGCAGATGTCGAGCCTCCTTCCCAAGCACCCTGCTTGAAAATGGTCGGCTGGTAACTGCACCAAGCAATTCTAGCAATGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

720

Amino Acids

78.67

Weight (kDa)

8.86

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	22 - 148	1.2e-12	AAA domain
Macro	PF01661	364 - 445	1.1e-06	Macro domain
DcpS_C	PF11969	578 - 635	1.1e-10	Scavenger mRNA decapping enzyme C-term binding
zf-C2HE	PF16278	640 - 692	1.3e-08	C2HE / C2H2 / C2HC zinc-binding finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	801
AccB7I	CCANNNNNTGG	1 cut(s)	1121
AccI	GTMKAC	1 cut(s)	1674
AccII	CGCG	1 cut(s)	358
AciI	CCGC	5 cut(s)	90, 223, 358, 410, 1754
AclWI	GGATC	3 cut(s)	482, 1539, 2150
AcoI	YGGCCR	2 cut(s)	376, 568
AcsI	RAATTY	4 cut(s)	611, 905, 1350, 1909
AcuI	CTGAAG	1 cut(s)	1599
AcyI	GRCGYC	1 cut(s)	798
AfaI	GTAC	3 cut(s)	520, 562, 1716
AfiI	CCNNNNNNNGG	8 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414
AflIII	ACRYGT	2 cut(s)	1279, 1855
AjnI	CCWGG	7 cut(s)	137, 153, 822, 1114, 1204, 1649, 1665
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AleI	CACNNNNGTG	1 cut(s)	1031
Alw21I	GWGCWC	2 cut(s)	82, 2044
Alw26I	GTCTC	4 cut(s)	805, 1303, 1597, 1929
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	3 cut(s)	482, 1539, 2150
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	5 cut(s)	31, 376, 568, 1484, 1662
ApaI	GGGCCC	1 cut(s)	1666
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	9 cut(s)	407, 430, 769, 1074, 1094, 1136, 1344, 1453, 1846
ApoI	RAATTY	4 cut(s)	611, 905, 1350, 1909
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
AspS9I	GGNCC	9 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484, 1662, 1663
AsuC2I	CCSGG	4 cut(s)	84, 146, 581, 582
AsuHPI	GGTGA	4 cut(s)	376, 776, 991, 2036
AsuII	TTCGAA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	82, 1666
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	2 cut(s)	378, 570
BanII	GRGCYC	3 cut(s)	125, 581, 1666
Bbv12I	GWGCWC	2 cut(s)	82, 2044
BbvI	GCAGC	9 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440, 1833
BccI	CCATC	4 cut(s)	67, 841, 1625, 1840
BciT130I	CCWGG	7 cut(s)	139, 155, 824, 1116, 1206, 1651, 1667
BciVI	GTATCC	4 cut(s)	151, 538, 697, 1212
BcnI	CCSGG	4 cut(s)	84, 146, 581, 582
BcoDI	GTCTC	4 cut(s)	805, 1303, 1597, 1929
BfaI	CTAG	4 cut(s)	1608, 1718, 1952, 2148
BfmI	CTRYAG	2 cut(s)	431, 1333
BfuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BmcAI	AGTACT	1 cut(s)	1716
Bme18I	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	9 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484, 1662, 1663
BmiI	GGNNCC	6 cut(s)	124, 143, 1291, 1406, 1664, 1830
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	5 cut(s)	242, 619, 884, 1400, 1699
BmuI	ACTGGG	1 cut(s)	702
BpmI	CTGGAG	2 cut(s)	281, 1173
Bpu10I	CCTNAGC	1 cut(s)	1739
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	4 cut(s)	84, 146, 581, 582
Bsa29I	ATCGAT	1 cut(s)	2029
BsaHI	GRCGYC	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	1303
BsaJI	CCNNGG	9 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650, 1665
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 995, 1025
Bsc4I	CCNNNNNNNGG	8 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414
Bse1I	ACTGG	4 cut(s)	379, 697, 708, 1106
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	4 cut(s)	218, 1084, 1680, 2158
BseBI	CCWGG	7 cut(s)	139, 155, 824, 1116, 1206, 1651, 1667
BseCI	ATCGAT	1 cut(s)	2029
BseDI	CCNNGG	9 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650, 1665
BseGI	GGATG	4 cut(s)	316, 1690, 1714, 1951
BseLI	CCNNNNNNNGG	8 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414
BseMI	GCAATG	4 cut(s)	218, 1084, 1680, 2158
BseMII	CTCAG	5 cut(s)	206, 317, 446, 1467, 1953
BseNI	ACTGG	4 cut(s)	379, 697, 708, 1106
BseRI	GAGGAG	2 cut(s)	115, 226
BseSI	GKGCMC	2 cut(s)	82, 1666
BseXI	GCAGC	9 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440, 1833
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	2 cut(s)	1832, 2118
Bsh1236I	CGCG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
BshVI	ATCGAT	1 cut(s)	2029
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	82, 2044
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	4 cut(s)	84, 145, 180, 581
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	8 cut(s)	29, 89, 144, 779, 871, 981, 1121, 1414
BsmAI	GTCTC	4 cut(s)	805, 1303, 1597, 1929
BsmBI	CGTCTC	2 cut(s)	805, 1597
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	2 cut(s)	432, 1216
BsnI	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
Bso31I	GGTCTC	1 cut(s)	1303
BsoBI	CYCGRG	1 cut(s)	580
Bsp119I	TTCGAA	1 cut(s)	656
Bsp120I	GGGCCC	1 cut(s)	1662
Bsp1286I	GDGCHC	5 cut(s)	82, 125, 581, 1666, 2044
Bsp143I	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 2155
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	5 cut(s)	90, 223, 358, 410, 1754
BspANI	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
BspCNI	CTCAG	5 cut(s)	205, 316, 447, 1468, 1952
BspDI	ATCGAT	1 cut(s)	2029
BspFNI	CGCG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	1537
BspLI	GGNNCC	6 cut(s)	124, 143, 1291, 1406, 1664, 1830
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	3 cut(s)	482, 1539, 2150
BspQI	GCTCTTC	1 cut(s)	569
BspT104I	TTCGAA	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	1303
BsrDI	GCAATG	4 cut(s)	218, 1084, 1680, 2158
BsrI	ACTGG	4 cut(s)	379, 697, 708, 1106
BssECI	CCNNGG	9 cut(s)	137, 138, 556, 580, 822, 975, 1205, 1650, 1665
BssMI	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 2155
BssNI	GRCGYC	1 cut(s)	798
BssT1I	CCWWGG	2 cut(s)	556, 975
Bst2UI	CCWGG	7 cut(s)	139, 155, 824, 1116, 1206, 1651, 1667
Bst6I	CTCTTC	1 cut(s)	569
BstACI	GRCGYC	1 cut(s)	798
BstAPI	GCANNNNNTGC	1 cut(s)	1344
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	790, 1752
BstDEI	CTNAG	8 cut(s)	192, 303, 342, 455, 1047, 1476, 1739, 1939
BstDSI	CCRYGG	1 cut(s)	556
BstEII	GGTNACC	1 cut(s)	1264
BstENI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
BstF5I	GGATG	4 cut(s)	316, 1690, 1714, 1951
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	7 cut(s)	334, 477, 1471, 1521, 1534, 1573, 2158
BstMAI	GTCTC	4 cut(s)	805, 1303, 1597, 1929
BstMBI	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 2155
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 215, 576, 1094, 1344, 1846, 2148
BstNI	CCWGG	7 cut(s)	139, 155, 824, 1116, 1206, 1651, 1667
BstNSI	RCATGY	3 cut(s)	1283, 1754, 1859
BstPI	GGTNACC	1 cut(s)	1264
BstSFI	CTRYAG	2 cut(s)	431, 1333
BstSLI	GKGCMC	2 cut(s)	82, 1666
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	9 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440, 1833
BstX2I	RGATCY	1 cut(s)	1531
BstXI	CCANNNNNNTGG	1 cut(s)	1631
BstYI	RGATCY	1 cut(s)	1531
Bsu15I	ATCGAT	1 cut(s)	2029
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BsuRI	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
BsuTUI	ATCGAT	1 cut(s)	2029
BtgI	CCRYGG	1 cut(s)	556
BtgZI	GCGATG	1 cut(s)	2035
BtsCI	GGATG	4 cut(s)	316, 1690, 1714, 1951
BtsIMutI	CAGTG	4 cut(s)	200, 715, 792, 1947
Cac8I	GCNNGC	2 cut(s)	790, 1752
CciI	TCATGA	1 cut(s)	1537
Cfr13I	GGNCC	9 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484, 1662, 1663
Cfr9I	CCCGGG	1 cut(s)	580
ClaI	ATCGAT	1 cut(s)	2029
CpoI	CGGWCCG	1 cut(s)	536
Csp6I	GTAC	3 cut(s)	519, 561, 1715
CspI	CGGWCCG	1 cut(s)	536
CviQI	GTAC	3 cut(s)	519, 561, 1715
DdeI	CTNAG	8 cut(s)	192, 303, 342, 455, 1047, 1476, 1739, 1939
DpnI	GATC	7 cut(s)	333, 476, 1470, 1520, 1533, 1572, 2157
DpnII	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 2155
EaeI	YGGCCR	2 cut(s)	376, 568
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	2 cut(s)	556, 975
Eco24I	GRGCYC	3 cut(s)	125, 581, 1666
Eco31I	GGTCTC	1 cut(s)	1303
Eco32I	GATATC	3 cut(s)	1042, 1725, 1820
Eco47I	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
Eco57I	CTGAAG	1 cut(s)	1599
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	580
Eco91I	GGTNACC	1 cut(s)	1264
EcoNI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
EcoO109I	RGGNCCY	1 cut(s)	1404
EcoO65I	GGTNACC	1 cut(s)	1264
EcoRI	GAATTC	1 cut(s)	1909
EcoRII	CCWGG	7 cut(s)	137, 153, 822, 1114, 1204, 1649, 1665
EcoRV	GATATC	3 cut(s)	1042, 1725, 1820
EcoT14I	CCWWGG	2 cut(s)	556, 975
EcoT22I	ATGCAT	2 cut(s)	1692, 1752
EcoT38I	GRGCYC	3 cut(s)	125, 581, 1666
ErhI	CCWWGG	2 cut(s)	556, 975
Esp3I	CGTCTC	2 cut(s)	805, 1597
FalI	AAGNNNNNCTT	8 cut(s)	582, 614, 1007, 1039, 1053, 1085, 1415, 1447
FaqI	GGGAC	1 cut(s)	120
FauI	CCCGC	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	1674
FokI	GGATG	4 cut(s)	323, 1677, 1721, 1958
FriOI	GRGCYC	3 cut(s)	125, 581, 1666
FspBI	CTAG	4 cut(s)	1608, 1718, 1952, 2148
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	2 cut(s)	281, 1173
HaeIII	GGCC	5 cut(s)	33, 378, 570, 1486, 1664
HapII	CCGG	4 cut(s)	84, 145, 180, 581
Hin1I	GRCGYC	1 cut(s)	798
HindIII	AAGCTT	4 cut(s)	344, 990, 1049, 1429
HpaII	CCGG	4 cut(s)	84, 145, 180, 581
HphI	GGTGA	4 cut(s)	376, 776, 991, 2036
Hpy166II	GTNNAC	6 cut(s)	80, 99, 530, 732, 946, 1675
Hpy188I	TCNGA	9 cut(s)	456, 880, 1060, 1477, 1546, 1597, 1630, 1729, 1828
Hpy188III	TCNNGA	8 cut(s)	260, 668, 806, 1322, 1522, 1538, 1694, 1934
Hpy8I	GTNNAC	6 cut(s)	80, 99, 530, 732, 946, 1675
HpyCH4IV	ACGT	3 cut(s)	12, 798, 1590
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 215, 576, 1094, 1344, 1846, 2148
HpyF3I	CTNAG	8 cut(s)	192, 303, 342, 455, 1047, 1476, 1739, 1939
HpySE526I	ACGT	3 cut(s)	12, 798, 1590
Hsp92I	GRCGYC	1 cut(s)	798
Kzo9I	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 2155
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	3 cut(s)	128, 637, 820
Lsp1109I	GCAGC	9 cut(s)	394, 417, 781, 1061, 1081, 1123, 1331, 1440, 1833
LweI	GCATC	5 cut(s)	242, 619, 884, 1400, 1699
MaeI	CTAG	4 cut(s)	1608, 1718, 1952, 2148
MaeII	ACGT	3 cut(s)	12, 798, 1590
MaeIII	GTNAC	3 cut(s)	1264, 1967, 2128
MalI	GATC	7 cut(s)	333, 476, 1470, 1520, 1533, 1572, 2157
MboI	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 2155
MboII	GAAGA	8 cut(s)	326, 448, 586, 976, 1015, 1135, 1526, 1903
MflI	RGATCY	1 cut(s)	1531
MhlI	GDGCHC	5 cut(s)	82, 125, 581, 1666, 2044
MlsI	TGGCCA	2 cut(s)	378, 570
MluNI	TGGCCA	2 cut(s)	378, 570
MlyI	GAGTC	6 cut(s)	525, 761, 946, 1004, 1469, 1931
MmeI	TCCRAC	1 cut(s)	522
Mox20I	TGGCCA	2 cut(s)	378, 570
Mph1103I	ATGCAT	2 cut(s)	1692, 1752
MscI	TGGCCA	2 cut(s)	378, 570
MseI	TTAA	4 cut(s)	1110, 1422, 1875, 1917
MslI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1854
Msp20I	TGGCCA	2 cut(s)	378, 570
MspA1I	CMGCKG	1 cut(s)	1846
MspI	CCGG	4 cut(s)	84, 145, 180, 581
Mva1269I	GAATGC	2 cut(s)	432, 1216
MvaI	CCWGG	7 cut(s)	139, 155, 824, 1116, 1206, 1651, 1667
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	7 cut(s)	52, 215, 576, 1094, 1344, 1846, 2148
NciI	CCSGG	4 cut(s)	84, 146, 581, 582
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 2155
NlaIV	GGNNCC	6 cut(s)	124, 143, 1291, 1406, 1664, 1830
NmuCI	GTSAC	1 cut(s)	1967
NsiI	ATGCAT	2 cut(s)	1692, 1752
NspI	RCATGY	3 cut(s)	1283, 1754, 1859
NspV	TTCGAA	1 cut(s)	656
OliI	CACNNNNGTG	1 cut(s)	1031
PaeI	GCATGC	1 cut(s)	1754
PagI	TCATGA	1 cut(s)	1537
PasI	CCCWGGG	1 cut(s)	138
PciI	ACATGT	2 cut(s)	1279, 1855
PciSI	GCTCTTC	1 cut(s)	569
PctI	GAATGC	2 cut(s)	432, 1216
PfeI	GAWTC	7 cut(s)	451, 506, 647, 671, 1541, 1598, 1793
PflFI	GACNNNGTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	1121
PleI	GAGTC	6 cut(s)	525, 760, 946, 1004, 1468, 1931
PpsI	GAGTC	6 cut(s)	525, 760, 946, 1004, 1468, 1931
PpuMI	RGGWCCY	1 cut(s)	1404
PscI	ACATGT	2 cut(s)	1279, 1855
Psp5II	RGGWCCY	1 cut(s)	1404
Psp6I	CCWGG	7 cut(s)	137, 153, 822, 1114, 1204, 1649, 1665
PspEI	GGTNACC	1 cut(s)	1264
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	7 cut(s)	137, 153, 822, 1114, 1204, 1649, 1665
PspN4I	GGNNCC	6 cut(s)	124, 143, 1291, 1406, 1664, 1830
PspOMI	GGGCCC	1 cut(s)	1662
PspPI	GGNCC	9 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484, 1662, 1663
PspPPI	RGGWCCY	1 cut(s)	1404
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	1531
PsyI	GACNNNGTC	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	1846
RsaI	GTAC	3 cut(s)	520, 562, 1716
RsaNI	GTAC	3 cut(s)	519, 561, 1715
RseI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1854
Rsr2I	CGGWCCG	1 cut(s)	536
RsrII	CGGWCCG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	1110, 1422, 1875, 1917
Sau3AI	GATC	7 cut(s)	331, 474, 1468, 1518, 1531, 1570, 2155
Sau96I	GGNCC	9 cut(s)	142, 299, 536, 1157, 1289, 1404, 1484, 1662, 1663
ScaI	AGTACT	1 cut(s)	1716
SchI	GAGTC	6 cut(s)	525, 761, 946, 1004, 1469, 1931
SduI	GDGCHC	5 cut(s)	82, 125, 581, 1666, 2044
SfaNI	GCATC	5 cut(s)	242, 619, 884, 1400, 1699
SfcI	CTRYAG	2 cut(s)	431, 1333
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	4 cut(s)	1031, 1629, 1685, 1854
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SphI	GCATGC	1 cut(s)	1754
SsiI	CCGC	5 cut(s)	90, 223, 358, 410, 1754
SspMI	CTAG	4 cut(s)	1608, 1718, 1952, 2148
StyI	CCWWGG	2 cut(s)	556, 975
TaiI	ACGT	3 cut(s)	15, 801, 1593
TaqI	TCGA	6 cut(s)	650, 656, 962, 1933, 2029, 2086
TaqII	GACCGA	1 cut(s)	524
TatI	WGTACW	1 cut(s)	1714
TauI	GCSGC	2 cut(s)	93, 413
TfiI	GAWTC	7 cut(s)	451, 506, 647, 671, 1541, 1598, 1793
Tru1I	TTAA	4 cut(s)	1110, 1422, 1875, 1917
Tru9I	TTAA	4 cut(s)	1110, 1422, 1875, 1917
TscAI	CASTG	4 cut(s)	200, 715, 799, 1947
TseFI	GTSAC	1 cut(s)	1967
TseI	GCWGC	9 cut(s)	407, 430, 769, 1074, 1094, 1136, 1344, 1453, 1846
Tsp45I	GTSAC	1 cut(s)	1967
TspDTI	ATGAA	8 cut(s)	33, 305, 623, 1043, 1313, 1526, 1554, 2010
TspGWI	ACGGA	4 cut(s)	118, 528, 1573, 1986
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	4 cut(s)	200, 715, 799, 1947
Tth111I	GACNNNGTC	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	1121
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	6 cut(s)	142, 299, 536, 1157, 1289, 1404
XagI	CCTNNNNNAGG	3 cut(s)	777, 869, 979
XapI	RAATTY	4 cut(s)	611, 905, 1350, 1909
XceI	RCATGY	3 cut(s)	1283, 1754, 1859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmaI	CCCGGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	1674
XspI	CTAG	4 cut(s)	1608, 1718, 1952, 2148
ZraI	GACGTC	1 cut(s)	799
ZrmI	AGTACT	1 cut(s)	1716
Zsp2I	ATGCAT	2 cut(s)	1692, 1752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.