Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003624.1

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Forward (+)

43012 .. 44549

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003624.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgtggcatccacgtgttagacgcgtagaggtcttttcaaccaattcggggcgggtcaaccttcggaggtttcgagggtttgaaattatggacatggatgttgatgaaccaaccaaagaagaaaagcaaggaaagcccataatcgtagtattgatgggttcacccggtagcggtaagtccacattctgcgaacaagtcatgggctcctcagatactatcaagaatgggaaagccggaacgaaagctcagtgtatagagagtgcgaggagtgcattgcgggaaggaaagagtgtgtttatagatagatgcaatctggagaaagagcaaagatatgagtttgtgaatcttggtggtcctcaagtggatgttcatgcattggtgcttgatcttcctgctaagctttgtatatcgcggtcagtgaagcgaacgggacatgaggggaacttgcaaggcggaaaagctgcggctgttgtgaatagaatgctgcagaagaaagaattgccgaatctgagcgaagggtttggtaggatcactttttgccagaatgagagtgatgttgaatctgccattcgtacatatagtggactcggtccgttggatacacttcctcatgggacttttggccagaagagcccaggtgcaaaagttcaacttggtataatgaaattcctaaagaaaacagatgctcctgctaatactgaatcgacttcgaacaaggttcaggattctaatgcttctcaaattactgggggaaaggataccagtgtgaaaggaacaggtttgtttacggaaagtggtagtatggagtccaagaaaggtaaacggcctgttgtaggttctgctggcactgatgtctctcttgacaatgctcccaccctggcatttccatctatttccacagcagattttcagtttgaccttgagaaggcatctgacattattgtagagaaagttgcagaatttgtaaataaacttggaaatgcagatgctagacttgttttagtggacttgacacataaatcgaagattttatccttggtgagggctaaagcttcacagaaaaaccttgactccaacaggttcttcacatttgtaggagatatcactaagcttcattcagaaggaggtcttcgctgcaatgtgatagctaatgctgctaactgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

388

Amino Acids

41.96

Weight (kDa)

9.19

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	24, 412
AciI	CCGC	6 cut(s)	52, 171, 277, 412, 453, 464
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	2 cut(s)	665, 959
AcvI	CACGTG	1 cut(s)	14
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	5 cut(s)	48, 170, 833, 925, 1041
AflIII	ACRYGT	2 cut(s)	13, 22
AgsI	TTSAA	4 cut(s)	39, 83, 560, 650
AjnI	CCWGG	2 cut(s)	634, 876
AjuI	GAANNNNNNNTTGG	2 cut(s)	1067, 1099
AluBI	AGCT	6 cut(s)	245, 400, 461, 1052, 1111, 1148
AluI	AGCT	6 cut(s)	245, 400, 461, 1052, 1111, 1148
Alw26I	GTCTC	1 cut(s)	859
AlwI	GGATC	1 cut(s)	536
AoxI	GGCC	2 cut(s)	622, 824
ApeKI	GCWGC	4 cut(s)	461, 484, 1134, 1154
ApoI	RAATTY	2 cut(s)	665, 959
AspS9I	GGNCC	2 cut(s)	353, 590
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	153, 1051
AsuII	TTCGAA	1 cut(s)	710
AvaII	GGWCC	2 cut(s)	353, 590
BaeI	ACNNNNGTAYC	2 cut(s)	750, 783
BalI	TGGCCA	1 cut(s)	624
BanII	GRGCYC	2 cut(s)	206, 635
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	1121
BbvI	GCAGC	4 cut(s)	448, 471, 1121, 1141
BccI	CCATC	2 cut(s)	148, 895
BceAI	ACGGC	1 cut(s)	839
BciT130I	CCWGG	2 cut(s)	636, 878
BciVI	GTATCC	2 cut(s)	592, 751
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	859
BfaI	CTAG	1 cut(s)	990
BfmI	CTRYAG	1 cut(s)	485
BfuI	GTATCC	2 cut(s)	592, 751
BisI	GCNGC	5 cut(s)	462, 465, 485, 1135, 1155
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	5 cut(s)	463, 466, 486, 1136, 1156
Bme1390I	CCNGG	3 cut(s)	165, 636, 878
Bme18I	GGWCC	2 cut(s)	353, 590
BmgT120I	GGNCC	2 cut(s)	353, 590
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	3 cut(s)	165, 636, 878
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	5 cut(s)	16, 296, 673, 938, 976
BmuI	ACTGGG	1 cut(s)	756
BpiI	GAAGAC	1 cut(s)	1121
BpmI	CTGGAG	1 cut(s)	335
Bpu1102I	GCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	710
BpuEI	CTTGAG	2 cut(s)	342, 941
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	634, 876, 1035
BsaXI	ACNNNNNCTCC	4 cut(s)	670, 700, 1055, 1085
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 170, 833, 925, 1041
Bse1I	ACTGG	2 cut(s)	751, 762
Bse3DI	GCAATG	2 cut(s)	272, 1144
BseBI	CCWGG	2 cut(s)	636, 878
BseDI	CCNNGG	3 cut(s)	634, 876, 1035
BseGI	GGATG	3 cut(s)	7, 103, 370
BseLI	CCNNNNNNNGG	5 cut(s)	48, 170, 833, 925, 1041
BseMI	GCAATG	2 cut(s)	272, 1144
BseMII	CTCAG	3 cut(s)	222, 260, 500
BseNI	ACTGG	2 cut(s)	751, 762
BseRI	GAGGAG	2 cut(s)	196, 280
BseXI	GCAGC	4 cut(s)	448, 471, 1121, 1141
Bsh1236I	CGCG	2 cut(s)	24, 412
BshFI	GGCC	2 cut(s)	624, 826
BsiSI	CCGG	2 cut(s)	165, 234
BslFI	GGGAC	2 cut(s)	444, 628
BslI	CCNNNNNNNGG	5 cut(s)	48, 170, 833, 925, 1041
BsmAI	GTCTC	1 cut(s)	859
BsmFI	GGGAC	2 cut(s)	444, 628
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	624, 826
Bsp119I	TTCGAA	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	206, 635
Bsp143I	GATC	2 cut(s)	385, 528
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	6 cut(s)	52, 171, 277, 412, 453, 464
BspANI	GGCC	2 cut(s)	624, 826
BspCNI	CTCAG	3 cut(s)	221, 259, 501
BspFNI	CGCG	2 cut(s)	24, 412
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	536
BspQI	GCTCTTC	1 cut(s)	623
BspT104I	TTCGAA	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	272, 1144
BsrI	ACTGG	2 cut(s)	751, 762
BssECI	CCNNGG	3 cut(s)	634, 876, 1035
BssMI	GATC	2 cut(s)	385, 528
BssT1I	CCWWGG	1 cut(s)	1035
Bst2UI	CCWGG	2 cut(s)	636, 878
Bst6I	CTCTTC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	5 cut(s)	208, 246, 396, 509, 1107
BstENI	CCTNNNNNAGG	3 cut(s)	831, 923, 1039
BstF5I	GGATG	3 cut(s)	7, 103, 370
BstFNI	CGCG	2 cut(s)	24, 412
BstKTI	GATC	2 cut(s)	388, 531
BstMAI	GTCTC	1 cut(s)	859
BstMBI	GATC	2 cut(s)	385, 528
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 269, 630, 1154
BstNI	CCWGG	2 cut(s)	636, 878
BstSCI	CCNGG	3 cut(s)	163, 634, 876
BstSFI	CTRYAG	1 cut(s)	485
BstUI	CGCG	2 cut(s)	24, 412
BstV1I	GCAGC	4 cut(s)	448, 471, 1121, 1141
BstV2I	GAAGAC	1 cut(s)	1121
BsuI	GTATCC	2 cut(s)	592, 751
BsuRI	GGCC	2 cut(s)	624, 826
BtsCI	GGATG	3 cut(s)	7, 103, 370
BtsIMutI	CAGTG	4 cut(s)	254, 423, 769, 846
Cac8I	GCNNGC	1 cut(s)	844
Cfr13I	GGNCC	2 cut(s)	353, 590
CpoI	CGGWCCG	1 cut(s)	590
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	573
CspI	CGGWCCG	1 cut(s)	590
CviAII	CATG	5 cut(s)	94, 199, 371, 434, 611
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	5 cut(s)	208, 246, 396, 509, 1107
DpnI	GATC	2 cut(s)	387, 530
DpnII	GATC	2 cut(s)	385, 528
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
EciI	GGCGGA	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	1035
Eco24I	GRGCYC	2 cut(s)	206, 635
Eco32I	GATATC	1 cut(s)	1102
Eco47I	GGWCC	2 cut(s)	353, 590
Eco72I	CACGTG	1 cut(s)	14
EcoNI	CCTNNNNNAGG	3 cut(s)	831, 923, 1039
EcoRII	CCWGG	2 cut(s)	634, 876
EcoRV	GATATC	1 cut(s)	1102
EcoT14I	CCWWGG	1 cut(s)	1035
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	206, 635
ErhI	CCWWGG	1 cut(s)	1035
FaeI	CATG	5 cut(s)	97, 202, 374, 437, 614
FalI	AAGNNNNNCTT	4 cut(s)	636, 668, 1113, 1145
FaqI	GGGAC	2 cut(s)	444, 628
FatI	CATG	5 cut(s)	93, 198, 370, 433, 610
FauI	CCCGC	2 cut(s)	45, 270
Fnu4HI	GCNGC	5 cut(s)	462, 465, 485, 1135, 1155
FokI	GGATG	2 cut(s)	110, 377
FriOI	GRGCYC	2 cut(s)	206, 635
Fsp4HI	GCNGC	5 cut(s)	462, 465, 485, 1135, 1155
FspBI	CTAG	1 cut(s)	990
GluI	GCNGC	5 cut(s)	462, 465, 485, 1135, 1155
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	624, 826
HapII	CCGG	2 cut(s)	165, 234
HgaI	GACGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	97, 202, 374, 437, 614
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	3 cut(s)	398, 1050, 1109
HinfI	GANTC	8 cut(s)	343, 505, 560, 585, 701, 725, 806, 1070
HpaII	CCGG	2 cut(s)	165, 234
HphI	GGTGA	2 cut(s)	153, 1051
Hpy166II	GTNNAC	7 cut(s)	58, 161, 180, 584, 786, 821, 1006
Hpy188I	TCNGA	5 cut(s)	66, 211, 510, 934, 1120
Hpy188III	TCNNGA	4 cut(s)	220, 314, 722, 860
Hpy8I	GTNNAC	7 cut(s)	58, 161, 180, 584, 786, 821, 1006
HpyAV	CCTTC	5 cut(s)	71, 275, 509, 919, 1115
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	9 cut(s)	272, 309, 374, 448, 487, 641, 956, 983, 1137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 269, 630, 1154
HpyF3I	CTNAG	5 cut(s)	208, 246, 396, 509, 1107
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	5 cut(s)	97, 202, 374, 437, 614
Kzo9I	GATC	2 cut(s)	385, 528
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	3 cut(s)	209, 691, 874
Lsp1109I	GCAGC	4 cut(s)	448, 471, 1121, 1141
LweI	GCATC	5 cut(s)	16, 296, 673, 938, 976
MaeI	CTAG	1 cut(s)	990
MaeII	ACGT	1 cut(s)	13
MalI	GATC	2 cut(s)	387, 530
MboI	GATC	2 cut(s)	385, 528
MboII	GAAGA	7 cut(s)	131, 380, 502, 640, 1036, 1075, 1121
MhlI	GDGCHC	2 cut(s)	206, 635
MlsI	TGGCCA	1 cut(s)	624
MluCI	AATT	6 cut(s)	43, 84, 497, 665, 741, 959
MluI	ACGCGT	1 cut(s)	22
MluNI	TGGCCA	1 cut(s)	624
MlyI	GAGTC	3 cut(s)	579, 815, 1064
MmeI	TCCRAC	2 cut(s)	576, 1098
Mox20I	TGGCCA	1 cut(s)	624
Mph1103I	ATGCAT	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	624
MspI	CCGG	2 cut(s)	165, 234
MspR9I	CCNGG	3 cut(s)	165, 636, 878
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	636, 878
MvnI	CGCG	2 cut(s)	24, 412
MwoI	GCNNNNNNNGC	4 cut(s)	133, 269, 630, 1154
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	385, 528
NlaIII	CATG	5 cut(s)	97, 202, 374, 437, 614
NlaIV	GGNNCC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	710
PciSI	GCTCTTC	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	5 cut(s)	343, 505, 560, 701, 725
PflFI	GACNNNGTC	1 cut(s)	588
PkrI	GCNGC	5 cut(s)	463, 466, 486, 1136, 1156
PleI	GAGTC	3 cut(s)	579, 814, 1064
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	3 cut(s)	579, 814, 1064
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	634, 876
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	2 cut(s)	634, 876
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	353, 590
PstI	CTGCAG	1 cut(s)	489
PsyI	GACNNNGTC	1 cut(s)	588
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
RseI	CAYNNNNRTG	1 cut(s)	12
Rsr2I	CGGWCCG	1 cut(s)	590
RsrII	CGGWCCG	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	623
SatI	GCNGC	5 cut(s)	462, 465, 485, 1135, 1155
Sau3AI	GATC	2 cut(s)	385, 528
Sau96I	GGNCC	2 cut(s)	353, 590
SchI	GAGTC	3 cut(s)	579, 815, 1064
ScrFI	CCNGG	3 cut(s)	165, 636, 878
SduI	GDGCHC	2 cut(s)	206, 635
SfaNI	GCATC	5 cut(s)	16, 296, 673, 938, 976
SfcI	CTRYAG	1 cut(s)	485
SfuI	TTCGAA	1 cut(s)	710
SinI	GGWCC	2 cut(s)	353, 590
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	357, 920
SmoI	CTYRAG	2 cut(s)	357, 920
Sse9I	AATT	6 cut(s)	43, 84, 497, 665, 741, 959
SsiI	CCGC	6 cut(s)	52, 171, 277, 412, 453, 464
SspMI	CTAG	1 cut(s)	990
StyD4I	CCNGG	3 cut(s)	163, 634, 876
StyI	CCWWGG	1 cut(s)	1035
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	4 cut(s)	73, 704, 710, 1022
TaqII	GACCGA	1 cut(s)	578
TasI	AATT	6 cut(s)	43, 84, 497, 665, 741, 959
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	5 cut(s)	343, 505, 560, 701, 725
TscAI	CASTG	4 cut(s)	254, 423, 769, 853
TseI	GCWGC	4 cut(s)	461, 484, 1134, 1154
TspDTI	ATGAA	4 cut(s)	120, 359, 677, 1103
TspGWI	ACGGA	2 cut(s)	582, 803
TspRI	CASTG	4 cut(s)	254, 423, 769, 853
Tth111I	GACNNNGTC	1 cut(s)	588
VpaK11BI	GGWCC	2 cut(s)	353, 590
XagI	CCTNNNNNAGG	3 cut(s)	831, 923, 1039
XapI	RAATTY	2 cut(s)	665, 959
XspI	CTAG	1 cut(s)	990
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.