Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003132

Physical Location & Seq

Genomic Coordinates Reverse (-)

25310984 .. 25312928

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1172800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTGGAGAAAGAAAAAATGGGATGATTTTGTGAAGCTTGGTGGTAGTTCCCAAGTTGATGTTCATGCTGTGGTGCTTGATCTTCCTGCCAAGCTTTGTATATTGCGGTATGTGAAGCGAACGGGCCATGAAGGAAACGTGCAAGGCGGGAAAGCTGTGGCGATTGTGAATAGAATGCTGCAGAACAAAGAACTGCCTGAGCTGAGTGAAGGGTTTGCTAGAATTACTTGTTGCCAGAGTGAGAGTGATGATCAATCTTCCGTTGATGCATATAGTGGACTTGGTCCGTTAGATACACTGCCCAATGGTTATTTTGGTCAGAAGAACCCCGGTGCAAAAATTCAACCAGGTATAATGAAGTTCTTAAAGAAAACAGATGGTCCTGCCAATACTGAATCAACGTTGAAGAGTGTACCGGATTCTAATGCTTCTCAAATTACTGAAGAAAAGGAAACCTCTTTGAAAGGAACAGTTTCACTTTCTGAAAAATCTGGTAAGGAGTCAAAGGAAGGTGAAAAGCTAGTTGTAGGCTCTGTTGACGGTGATGGTTCTCTAAACGATGCTTCCACTCTGGCATTTCCTTCCATTTCAACAGCAGATTTTCAATTTGACCTTGCAAAGGCATCTGATATTATTGTTGAGAAAGTTATAGAATTTAGGAATAAGCTTGGAAATTCTAGACTTGTTTTAGTGGACTTGAGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33 DcpS_C HLH Macro zf-C2HE

Protein Analysis

236

Amino Acids

25.4

Weight (kDa)

5.83

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01310
fragaria_vesca	FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090 FvH4_6g11090
malus_domestica	MD04G1160300.v1.1 MD05G1095500.v1.1 MD10G1110900.v1.1 MD12G1172800.v1.1
prunus_persica	Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1 Prupe.6G280900_v2.0.a1
pyrus_communis	pycom04g14360 pycom12g16400 pycom12g16440
rosa_chinensis	RchiOBHm_Chr3g0462501 RchiOBHm_Chr3g0462521
rosa_laevigata	RLG00000024853 RLG00000024857
rosa_multiflora	Rmu_sc0003624.1_g000009 Rmu_sc0003624.1_g000012 Rmu_sc0003624.1_g000015 Rmu_sc0011346.1_g000002 Rmu_sc0011346.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417460
rosa_rugosa	Rorug03G0057000
rosa_samantha	Rh3AG115200 Rh3BG118500 Rh3BG118600 Rh3CG121400 Rh3CG122000 Rh3DG120700
rosa_wichuraiana	Rw0G003810 Rw3G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	106, 147
AclI	AACGTT	1 cut(s)	401
AcsI	RAATTY	3 cut(s)	339, 653, 673
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	619
AgsI	TTSAA	5 cut(s)	344, 406, 463, 591, 605
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	6 cut(s)	37, 94, 155, 202, 520, 667
AluI	AGCT	6 cut(s)	37, 94, 155, 202, 520, 667
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	3 cut(s)	339, 653, 673
Asp700I	GAANNNNTTC	1 cut(s)	472
AspS9I	GGNCC	3 cut(s)	124, 284, 380
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	524, 554
AvaII	GGWCC	2 cut(s)	284, 380
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	371, 539
BciT130I	CCWGG	1 cut(s)	348
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	330
BfaI	CTAG	3 cut(s)	219, 521, 678
BfmI	CTRYAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	330, 348
Bme18I	GGWCC	2 cut(s)	284, 380
BmgT120I	GGNCC	3 cut(s)	124, 284, 380
BmrFI	CCNGG	2 cut(s)	330, 348
BmsI	GCATC	3 cut(s)	256, 550, 632
Bpu10I	CCTNAGC	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMII	CTCAG	2 cut(s)	189, 194
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	330, 416
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	79, 250
BspACI	CCGC	2 cut(s)	106, 147
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	190, 195
BspMAI	CTGCAG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	79, 250
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	472, 542
Bst6I	CTCTTC	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	198, 203
BstENI	CCTNNNNNAGG	1 cut(s)	617
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	82, 253
BstMBI	GATC	2 cut(s)	79, 250
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	2 cut(s)	328, 346
BstSFI	CTRYAG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	124, 284, 380
CsiI	ACCWGGT	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	2 cut(s)	65, 128
CviJI	RGCY	8 cut(s)	37, 94, 126, 155, 202, 520, 531, 667
CviKI_1	RGCY	8 cut(s)	37, 94, 126, 155, 202, 520, 531, 667
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	198, 203
DpnI	GATC	2 cut(s)	81, 252
DpnII	GATC	2 cut(s)	79, 250
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	284, 380
Eco57I	CTGAAG	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	2 cut(s)	68, 131
FaiI	YATR	8 cut(s)	66, 101, 111, 129, 271, 273, 353, 650
FatI	CATG	2 cut(s)	64, 127
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	3 cut(s)	219, 521, 678
GluI	GCNGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	330, 416
Hin1II	CATG	2 cut(s)	68, 131
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	3 cut(s)	35, 92, 665
HinfI	GANTC	3 cut(s)	395, 419, 500
HpaII	CCGG	2 cut(s)	330, 416
HphI	GGTGA	2 cut(s)	524, 554
Hpy166II	GTNNAC	4 cut(s)	278, 413, 538, 694
Hpy188I	TCNGA	3 cut(s)	321, 484, 628
Hpy188III	TCNNGA	1 cut(s)	678
Hpy8I	GTNNAC	4 cut(s)	278, 413, 538, 694
HpyAV	CCTTC	4 cut(s)	125, 203, 503, 591
HpyCH4III	ACNGT	2 cut(s)	472, 542
HpyCH4IV	ACGT	2 cut(s)	138, 401
HpyCH4V	TGCA	5 cut(s)	142, 181, 269, 335, 617
HpyF3I	CTNAG	2 cut(s)	198, 203
HpySE526I	ACGT	2 cut(s)	138, 401
Hsp92II	CATG	2 cut(s)	68, 131
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	79, 250
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	3 cut(s)	256, 550, 632
MabI	ACCWGGT	1 cut(s)	346
MaeI	CTAG	3 cut(s)	219, 521, 678
MaeII	ACGT	2 cut(s)	138, 401
MalI	GATC	2 cut(s)	81, 252
MboI	GATC	2 cut(s)	79, 250
MboII	GAAGA	5 cut(s)	74, 249, 334, 418, 455
MluCI	AATT	6 cut(s)	222, 339, 435, 605, 653, 673
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	1 cut(s)	466
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	2 cut(s)	365, 706
MspI	CCGG	2 cut(s)	330, 416
MspR9I	CCNGG	2 cut(s)	330, 348
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	348
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	79, 250
NlaIII	CATG	2 cut(s)	68, 131
NsiI	ATGCAT	1 cut(s)	271
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	395, 419
PflFI	GACNNNGTC	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp1406I	AACGTT	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspPI	GGNCC	3 cut(s)	124, 284, 380
PstI	CTGCAG	1 cut(s)	183
PsyI	GACNNNGTC	1 cut(s)	282
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	365, 706
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	2 cut(s)	79, 250
Sau96I	GGNCC	3 cut(s)	124, 284, 380
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	2 cut(s)	330, 348
SexAI	ACCWGGT	1 cut(s)	346
SfaNI	GCATC	3 cut(s)	256, 550, 632
SfcI	CTRYAG	1 cut(s)	179
SinI	GGWCC	2 cut(s)	284, 380
SmlI	CTYRAG	1 cut(s)	697
SmoI	CTYRAG	1 cut(s)	697
Sse9I	AATT	6 cut(s)	222, 339, 435, 605, 653, 673
SsiI	CCGC	2 cut(s)	106, 147
SspMI	CTAG	3 cut(s)	219, 521, 678
StyD4I	CCNGG	2 cut(s)	328, 346
TaaI	ACNGT	2 cut(s)	472, 542
TaiI	ACGT	2 cut(s)	141, 404
TasI	AATT	6 cut(s)	222, 339, 435, 605, 653, 673
TfiI	GAWTC	2 cut(s)	395, 419
Tru1I	TTAA	2 cut(s)	365, 706
Tru9I	TTAA	2 cut(s)	365, 706
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	53, 144, 371
TspGWI	ACGGA	2 cut(s)	250, 276
TspRI	CASTG	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	284, 380
XagI	CCTNNNNNAGG	1 cut(s)	617
XapI	RAATTY	3 cut(s)	339, 653, 673
XbaI	TCTAGA	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	3 cut(s)	219, 521, 678
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.