Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001455

Physical Location & Seq

Genomic Coordinates Reverse (-)

43719851 .. 43727816

Gene Structure 7966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1304700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAGTGCAACGAAATGTGGAATCAAAGACTGCCCAGATTGTTGATCCCAGTGCGAAACAAAAGCCACCAAACTTTTCCTTGAAGCGAAAAACATTTGAGGGATCTGCTTCAGAAACTTCAAAGAACCTTCAAAAGAAGTTGTTGCAGAACAGGTTCGCATTCATGAGTCATGTGGAGAGCAAGACTAACAGCACTTTTGGTGACCATCAGACCTCTGAACTCGGTAGTCCTTGTGTGATCAATGTGATGGAACTTGATATTCCTTCAGTGATGGAAAATGATGGAAATGTTGAAAAGGCTGAAGCGTACGCTAAGGAGCTTGAAGATATATGCAACGTGCTGAGAAAGAAACACGTGGAAGCCAAGGAATTGCTAGTTAGAGCTATTGTGAACAACTACAGTCTACTGATGCTTAACCATCCCATTTACGAAGCAAAGATATCCTTCAGACTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.37

Weight (kDa)

7.77

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490
fragaria_vesca	FvH4_5g25370 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040
malus_domestica	MD05G1304700.v1.1 MD05G1304800.v1.1 MD10G1283800.v1.1
prunus_persica	Prupe.4G057700_v2.0.a1 Prupe.4G057700_v2.0.a1
pyrus_communis	pycom05g28200 pycom05g28990 pycom10g23670
rosa_chinensis	RchiOBHm_Chr7g0215591 RchiOBHm_Chr7g0216741
rosa_laevigata	RLG00000002542 RLG00000002543 RLG00000002645
rosa_multiflora	Rmu_sc0000898.1_g000086 Rmu_sc0003814.1_g000007 Rmu_sc0007602.1_g000013 Rmu_sc0009814.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242970 Rroxscaffold_3G00244080
rosa_rugosa	Rorug06G0072200 Rorug07G0154800 Rorug07G0154900 Rorug07G0162000 Rorug07G0162100
rosa_samantha	Rh2BG169600 Rh2DG168600 Rh7AG291100 Rh7AG303000 Rh7BG283200 Rh7BG293700 Rh7CG311100 Rh7CG321700 Rh7DG294900 Rh7DG302600 Rh7DG302700 Rh7DG302800
rosa_wichuraiana	Rw6G016300 Rw7G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	406
AclWI	GGATC	2 cut(s)	41, 112
AcuI	CTGAAG	4 cut(s)	96, 252, 324, 433
AcvI	CACGTG	1 cut(s)	358
AfaI	GTAC	1 cut(s)	311
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	5 cut(s)	85, 123, 134, 296, 326
AluBI	AGCT	2 cut(s)	322, 386
AluI	AGCT	2 cut(s)	322, 386
AlwI	GGATC	2 cut(s)	41, 112
Asp700I	GAANNNNTTC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	358
BccI	CCATC	5 cut(s)	216, 244, 268, 278, 429
BclI	TGATCA	1 cut(s)	240
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	400
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	402
BmuI	ACTGGG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	51
BsiWI	CGTACG	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	46, 104, 240
BspCNI	CTCAG	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	165
BspPI	GGATC	2 cut(s)	41, 112
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	46, 104, 240
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	404, 456
BstBAI	YACGTR	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	315, 344
BstEII	GGTNACC	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	3 cut(s)	49, 107, 243
BstMBI	GATC	3 cut(s)	46, 104, 240
BstPI	GGTNACC	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	58, 276
CciI	TCATGA	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	166, 173
CviJI	RGCY	5 cut(s)	67, 302, 322, 365, 386
CviKI_1	RGCY	5 cut(s)	67, 302, 322, 365, 386
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	315, 344
DpnI	GATC	3 cut(s)	48, 106, 242
DpnII	GATC	3 cut(s)	46, 104, 240
Eco130I	CCWWGG	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	444
Eco57I	CTGAAG	4 cut(s)	96, 252, 324, 433
Eco72I	CACGTG	1 cut(s)	358
Eco91I	GGTNACC	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	169, 176
FaiI	YATR	4 cut(s)	167, 174, 332, 334
FalI	AAGNNNNNCTT	1 cut(s)	431
FatI	CATG	2 cut(s)	165, 172
FbaI	TGATCA	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	406
FokI	GGATG	1 cut(s)	408
FspBI	CTAG	1 cut(s)	377
Hin1II	CATG	2 cut(s)	169, 176
HinfI	GANTC	2 cut(s)	23, 169
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	394, 407
Hpy188I	TCNGA	4 cut(s)	115, 213, 220, 452
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	394, 407
HpyAV	CCTTC	3 cut(s)	140, 276, 457
HpyCH4III	ACNGT	2 cut(s)	404, 456
HpyCH4IV	ACGT	2 cut(s)	339, 357
HpyCH4V	TGCA	3 cut(s)	10, 148, 336
HpyF3I	CTNAG	2 cut(s)	315, 344
HpySE526I	ACGT	2 cut(s)	339, 357
Hsp92II	CATG	2 cut(s)	169, 176
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	46, 104, 240
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	3 cut(s)	50, 64, 139
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	339, 357
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	48, 106, 242
MboI	GATC	3 cut(s)	46, 104, 240
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	94, 226
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	161
NdeII	GATC	3 cut(s)	46, 104, 240
NlaIII	CATG	2 cut(s)	169, 176
NmuCI	GTSAC	1 cut(s)	203
PagI	TCATGA	1 cut(s)	165
PctI	GAATGC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	23
Pfl23II	CGTACG	1 cut(s)	309
PleI	GAGTC	1 cut(s)	177
PmaCI	CACGTG	1 cut(s)	358
PmlI	CACGTG	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	177
Ppu21I	YACGTR	1 cut(s)	358
PspCI	CACGTG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	203
PspLI	CGTACG	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	3 cut(s)	46, 104, 240
SchI	GAGTC	1 cut(s)	178
SetI	ASST	7 cut(s)	132, 158, 218, 324, 342, 360, 388
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	400
Sse9I	AATT	1 cut(s)	371
SspMI	CTAG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	404, 456
TaiI	ACGT	2 cut(s)	342, 360
TasI	AATT	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	2 cut(s)	58, 276
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	58, 276
XmiI	GTMKAC	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.