pycom10g23670

protein At4g18490 isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
25757831 .. 25762214
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23670.2

Sequence Viewer

Length: 2010 bp
ATGAACAATGTAATCAGATCCTATGTTCCTCTTATAACAGATGAGGAAATCGGAGACGAATTTCTCACCTCCTGGAAATCAATATCAGTAATGGAAGATGACGGAATGGATTTTGGCTTTGATACAGTTTCCAAAGGCTCCAAAGGCTCCAAAGGCAAGAAGAAGGTGTTTGACTTTGAGAAGCTGGATATGGATTTCAATCTGGATGGTGACTTTGGCAAGATATCGTCTTTCAAAATGGACATGCCAGACCTTGATTTCTCAAGCCCGCCCAGAAAAGCCGCAAAAACCAAGGAGAAATCTGAAGAAGAATCTTCCAAAGGAAACCGTCAAGGGAAACAAGACCCCTTTAAATTCTCTTTTGATTTCAATGATGGGTTGGCTGATTTCGATCTTGATTCAAGCTTAACGAAAAGTGAAAAAAGTTCAAATAAGAATCAAGATAGCAGAAAAGAGTTTCTTTCTGATAGAAGAGGACCTCAGGGCTCTAAAATCGATCTGGTTGAAGAGATTAGTACACTTGATGGTGGTTCTGAGAGAGTGGCCCCTTTAAAGGTTGATATTTCATTAGTTGTTACGGGCAAGGTTAATTCTATCAGTGATGATTGCCCATCAAAACCTAGATCAGAAAATCTGAAACTTCCACATGGTCCAAGGTCTCCAGGAAAAGTAATGACTAATAGTGTTGAAGAATCAGATCAGCAAATTCATTTATCTGAGAAGGAGATGGCCACAGAACCATATGGTAAGCCAGCAACAGATGACCTGTCTGGTCAACTTGTAGGGGGAGTTGATTCAAATGGAGGTACCATTTTTGAAGGAAAGAATGATGGTCGTCTTCAGATCACAGATTTGAATACCATTTCAAGTGGAAAAGAAGATGTTGATGAGAAAATGTCAGCAGGAGATGGTCCTAATGGTGAAGACTTGCCTTTGAAGGATTCATCTTCAGTAAACATCGCTAATACAGATAGCAATAATGGTGATGGGTGTAAGTCTGGCAGCGACATATCTACACAAAACGCTGAACCAAAGTTAGGCAGTGATATCTCGAATGAGAATGCTGAATCAGCTATAGATAACTTAGATCTCGAAGACAATTCCAATACATTCGTCTCAAGGAAGACACTACATAACATCAAATGTATCAAGGATGACCAAAATTCGACTTTAAAGCTTCCTTTGTCTGCAGAGAGCAGTGAATCTGCAGTTGATAAAGCTACGCTGACAAATGAAAGCAAAAGTGGAGAATTCCACTCAAAGGTTTCTAAGAGATTGGAAGAAGCTGGATCTCAAATGTTTCAGCCATCATTAATAGGAGCAAAACCTCTCTCATCTGGAATCAAAAGGATTGATACCATGCGTCTACGTCCAGCAATTGAAGGGGTGGCTACTAATGCTCATGGTGCACAAATTGGAAGCAATTTGCCTGATACTCCTGTGTTAGTTGATAAAGAAATGAAAGCCAAACATGTAATATCTGGAAGGGAGGGCCTGAATTCTGATGCTGTACCAAACAGGGCCAAACTGGTTGTGAATCCACGACCATCTGACAAAGAAATAACAGAAAGGGAAACTGTCCTGGGAAGTGGACTGAGAAAAAGTCTTCATGATCTGAGGAATATTGGTGGCAGTAAAGTTTCATTGAATGCTACACCGCATAAAGAAGTGAAATCCCTGAGTAGTCCAGAGCAAAACATGGAAGTGCAACGAAATGTGGAATCAAAGACTGCCCAGATTGTTGAGAAACAAATGTCACCAAACCTTTCCTTGAAGCGAAAAACATTTGAGGTTCACATTCATGAGAGTCATTTGGAGAGCAAGACTAACAGCACTTTAGATGACCATCCGACCTCTGGACTTGGTAGTCCTTGCGCGATCAATGTGATGGAACTTGATATTCCTTCAGCAATGGAAAATGACGAAAATGTTGAAAAGGCTGAAGCGTATGCTAAGGAGCTTGAAGATGTGAGTAAATTATCACTTGTTTTACGATATGCAACATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

670

Amino Acids

72.72

Weight (kDa)

5.03

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 1866
Acc65I GGTACC 1 cut(s) 806
AccB1I GGYRCC 1 cut(s) 806
AccI GTMKAC 1 cut(s) 1366
AccII CGCG 1 cut(s) 1877
AciI CCGC 3 cut(s) 269, 282, 1658
AclWI GGATC 2 cut(s) 12, 1297
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 6 cut(s) 59, 353, 705, 1162, 1250, 1498
AcuI CTGAAG 5 cut(s) 324, 824, 933, 1890, 1962
AfaI GTAC 3 cut(s) 517, 808, 1512
AfiI CCNNNNNNNGG 4 cut(s) 553, 1037, 1261, 1856
AflIII ACRYGT 1 cut(s) 1471
AjnI CCWGG 3 cut(s) 71, 661, 1581
AluBI AGCT 7 cut(s) 184, 405, 1073, 1177, 1220, 1286, 1960
AluI AGCT 7 cut(s) 184, 405, 1073, 1177, 1220, 1286, 1960
Alw21I GWGCWC 1 cut(s) 1411
Alw26I GTCTC 3 cut(s) 48, 663, 1120
Alw44I GTGCAC 1 cut(s) 1407
AlwI GGATC 2 cut(s) 12, 1297
AoxI GGCC 4 cut(s) 543, 729, 1492, 1521
ApaLI GTGCAC 1 cut(s) 1407
ApeKI GCWGC 1 cut(s) 1002
ApoI RAATTY 6 cut(s) 59, 353, 705, 1162, 1250, 1498
AseI ATTAAT 1 cut(s) 1313
Asp718I GGTACC 1 cut(s) 806
AspLEI GCGC 1 cut(s) 1877
AspS9I GGNCC 6 cut(s) 476, 544, 650, 911, 1492, 1521
AsuHPI GGTGA 5 cut(s) 58, 221, 932, 995, 1749
AvaII GGWCC 3 cut(s) 476, 650, 911
AxyI CCTNAGG 1 cut(s) 480
BaeGI GKGCMC 1 cut(s) 1411
BaeI ACNNNNGTAYC 2 cut(s) 1425, 1458
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 1 cut(s) 806
BanII GRGCYC 1 cut(s) 488
BbsI GAAGAC 5 cut(s) 830, 930, 1101, 1130, 1598
Bbv12I GWGCWC 1 cut(s) 1411
BbvI GCAGC 1 cut(s) 1014
BciT130I CCWGG 3 cut(s) 73, 663, 1583
BcoDI GTCTC 3 cut(s) 48, 663, 1120
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 3 cut(s) 1074, 1188, 1206
BglII AGATCT 1 cut(s) 1087
BisI GCNGC 2 cut(s) 282, 1003
BlsI GCNGC 2 cut(s) 283, 1004
Bme1390I CCNGG 3 cut(s) 73, 663, 1583
Bme18I GGWCC 3 cut(s) 476, 650, 911
BmgT120I GGNCC 6 cut(s) 476, 544, 650, 911, 1492, 1521
BmiI GGNNCC 4 cut(s) 139, 148, 546, 808
BmrFI CCNGG 3 cut(s) 73, 663, 1583
BmsI GCATC 1 cut(s) 1495
BpiI GAAGAC 5 cut(s) 830, 930, 1101, 1130, 1598
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 1953
BpuEI CTTGAG 2 cut(s) 247, 1102
Bsa29I ATCGAT 1 cut(s) 495
BsaBI GATNNNNATC 3 cut(s) 198, 390, 1845
BsaI GGTCTC 1 cut(s) 663
BsaJI CCNNGG 3 cut(s) 291, 653, 1582
Bsc4I CCNNNNNNNGG 4 cut(s) 553, 1037, 1261, 1856
Bse1I ACTGG 1 cut(s) 1533
Bse21I CCTNAGG 1 cut(s) 480
Bse3DI GCAATG 1 cut(s) 1917
Bse8I GATNNNNATC 3 cut(s) 198, 390, 1845
BseBI CCWGG 3 cut(s) 73, 663, 1583
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 291, 653, 1582
BseGI GGATG 3 cut(s) 211, 1159, 1846
BseJI GATNNNNATC 3 cut(s) 198, 390, 1845
BseLI CCNNNNNNNGG 4 cut(s) 553, 1037, 1261, 1856
BseMI GCAATG 1 cut(s) 1917
BseMII CTCAG 6 cut(s) 494, 525, 708, 1586, 1607, 1670
BseNI ACTGG 1 cut(s) 1533
BseSI GKGCMC 1 cut(s) 1411
BseXI GCAGC 1 cut(s) 1014
Bsh1236I CGCG 1 cut(s) 1877
BshFI GGCC 4 cut(s) 545, 731, 1494, 1523
BshNI GGYRCC 1 cut(s) 806
BshVI ATCGAT 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 1411
BslI CCNNNNNNNGG 4 cut(s) 553, 1037, 1261, 1856
BsmAI GTCTC 3 cut(s) 48, 663, 1120
BsmBI CGTCTC 2 cut(s) 48, 1120
BsmI GAATGC 2 cut(s) 1066, 1654
BsnI GGCC 4 cut(s) 545, 731, 1494, 1523
Bso31I GGTCTC 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 488, 1411
BspACI CCGC 3 cut(s) 269, 282, 1658
BspANI GGCC 4 cut(s) 545, 731, 1494, 1523
BspCNI CTCAG 6 cut(s) 493, 526, 709, 1587, 1608, 1671
BspDI ATCGAT 1 cut(s) 495
BspFNI CGCG 1 cut(s) 1877
BspHI TCATGA 2 cut(s) 1609, 1801
BspLI GGNNCC 4 cut(s) 139, 148, 546, 808
BspMAI CTGCAG 2 cut(s) 1192, 1210
BspPI GGATC 2 cut(s) 12, 1297
BspT107I GGYRCC 1 cut(s) 806
BspTNI GGTCTC 1 cut(s) 663
BsrDI GCAATG 1 cut(s) 1917
BsrI ACTGG 1 cut(s) 1533
BssECI CCNNGG 3 cut(s) 291, 653, 1582
BssT1I CCWWGG 2 cut(s) 291, 653
Bst2UI CCWGG 3 cut(s) 73, 663, 1583
Bst4CI ACNGT 3 cut(s) 127, 329, 1579
Bst6I CTCTTC 2 cut(s) 466, 501
BstC8I GCNNGC 2 cut(s) 269, 753
BstDEI CTNAG 9 cut(s) 480, 534, 717, 1084, 1269, 1595, 1616, 1679, 1953
BstF5I GGATG 3 cut(s) 211, 1159, 1846
BstFNI CGCG 1 cut(s) 1877
BstHHI GCGC 1 cut(s) 1877
BstMAI GTCTC 3 cut(s) 48, 663, 1120
BstMWI GCNNNNNNNGC 5 cut(s) 144, 153, 1070, 1397, 1406
BstNI CCWGG 3 cut(s) 73, 663, 1583
BstNSI RCATGY 3 cut(s) 247, 1475, 2007
BstSCI CCNGG 3 cut(s) 71, 661, 1581
BstSFI CTRYAG 3 cut(s) 1074, 1188, 1206
BstSLI GKGCMC 1 cut(s) 1411
BstUI CGCG 1 cut(s) 1877
BstV1I GCAGC 1 cut(s) 1014
BstV2I GAAGAC 5 cut(s) 830, 930, 1101, 1130, 1598
BstX2I RGATCY 3 cut(s) 17, 1087, 1289
BstYI RGATCY 3 cut(s) 17, 1087, 1289
Bsu15I ATCGAT 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 480
BsuRI GGCC 4 cut(s) 545, 731, 1494, 1523
BsuTUI ATCGAT 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 943
BtsCI GGATG 3 cut(s) 211, 1159, 1846
BtsI GCAGTG 2 cut(s) 1048, 1204
BtsIMutI CAGTG 3 cut(s) 604, 1048, 1204
Cac8I GCNNGC 2 cut(s) 269, 753
CciI TCATGA 2 cut(s) 1609, 1801
CfoI GCGC 1 cut(s) 1877
Cfr13I GGNCC 6 cut(s) 476, 544, 650, 911, 1492, 1521
ClaI ATCGAT 1 cut(s) 495
CseI GACGC 1 cut(s) 1352
Csp6I GTAC 3 cut(s) 516, 807, 1511
CviAII CATG 9 cut(s) 244, 647, 1360, 1403, 1472, 1610, 1699, 1802, 2004
CviQI GTAC 3 cut(s) 516, 807, 1511
DdeI CTNAG 9 cut(s) 480, 534, 717, 1084, 1269, 1595, 1616, 1679, 1953
DraI TTTAAA 3 cut(s) 352, 552, 1173
DrdI GACNNNNNNGTC 1 cut(s) 1866
DseDI GACNNNNNNGTC 1 cut(s) 1866
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 2 cut(s) 466, 501
EarI CTCTTC 2 cut(s) 466, 501
Eco130I CCWWGG 2 cut(s) 291, 653
Eco24I GRGCYC 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 663
Eco32I GATATC 2 cut(s) 225, 1048
Eco47I GGWCC 3 cut(s) 476, 650, 911
Eco57I CTGAAG 5 cut(s) 324, 824, 933, 1890, 1962
Eco81I CCTNAGG 1 cut(s) 480
EcoO109I RGGNCCY 2 cut(s) 476, 1492
EcoRI GAATTC 2 cut(s) 1250, 1498
EcoRII CCWGG 3 cut(s) 71, 661, 1581
EcoRV GATATC 2 cut(s) 225, 1048
EcoT14I CCWWGG 2 cut(s) 291, 653
EcoT38I GRGCYC 1 cut(s) 488
ErhI CCWWGG 2 cut(s) 291, 653
Esp3I CGTCTC 2 cut(s) 48, 1120
FaeI CATG 9 cut(s) 247, 650, 1363, 1406, 1475, 1613, 1702, 1805, 2007
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 9 cut(s) 243, 646, 1359, 1402, 1471, 1609, 1698, 1801, 2003
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 1 cut(s) 742
FblI GTMKAC 1 cut(s) 1366
Fnu4HI GCNGC 2 cut(s) 282, 1003
FokI GGATG 3 cut(s) 218, 1166, 1833
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 2 cut(s) 282, 1003
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 1876
GluI GCNGC 2 cut(s) 282, 1003
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 4 cut(s) 545, 731, 1494, 1523
HgaI GACGC 1 cut(s) 1352
HhaI GCGC 1 cut(s) 1877
Hin1II CATG 9 cut(s) 247, 650, 1363, 1406, 1475, 1613, 1702, 1805, 2007
Hin6I GCGC 1 cut(s) 1875
HinP1I GCGC 1 cut(s) 1875
HincII GTYRAC 1 cut(s) 776
HindII GTYRAC 1 cut(s) 776
HindIII AAGCTT 2 cut(s) 403, 1175
HphI GGTGA 5 cut(s) 58, 221, 932, 995, 1749
Hpy166II GTNNAC 7 cut(s) 518, 776, 955, 1367, 1409, 1592, 1795
Hpy8I GTNNAC 7 cut(s) 518, 776, 955, 1367, 1409, 1592, 1795
HpyAV CCTTC 7 cut(s) 157, 715, 812, 931, 1376, 1479, 1914
HpyCH4III ACNGT 3 cut(s) 127, 329, 1579
HpyCH4IV ACGT 1 cut(s) 1369
HpyCH4V TGCA 5 cut(s) 1190, 1208, 1409, 1708, 2000
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 153, 1070, 1397, 1406
HpyF3I CTNAG 9 cut(s) 480, 534, 717, 1084, 1269, 1595, 1616, 1679, 1953
HpySE526I ACGT 1 cut(s) 1369
Hsp92II CATG 9 cut(s) 247, 650, 1363, 1406, 1475, 1613, 1702, 1805, 2007
HspAI GCGC 1 cut(s) 1875
KpnI GGTACC 1 cut(s) 810
LmnI GCTCC 4 cut(s) 143, 152, 1319, 1957
Lsp1109I GCAGC 1 cut(s) 1014
LweI GCATC 1 cut(s) 1495
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 1369
MaeIII GTNAC 3 cut(s) 209, 574, 1755
MfeI CAATTG 1 cut(s) 1377
MflI RGATCY 3 cut(s) 17, 1087, 1289
MhlI GDGCHC 2 cut(s) 488, 1411
MlsI TGGCCA 1 cut(s) 731
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 1 cut(s) 1816
MmeI TCCRAC 1 cut(s) 1874
Mox20I TGGCCA 1 cut(s) 731
MscI TGGCCA 1 cut(s) 731
MseI TTAA 6 cut(s) 351, 407, 551, 588, 1172, 1313
MslI CAYNNNNRTG 2 cut(s) 1703, 1800
Msp20I TGGCCA 1 cut(s) 731
MspR9I CCNGG 3 cut(s) 73, 663, 1583
MunI CAATTG 1 cut(s) 1377
Mva1269I GAATGC 2 cut(s) 1066, 1654
MvaI CCWGG 3 cut(s) 73, 663, 1583
MvnI CGCG 1 cut(s) 1877
MwoI GCNNNNNNNGC 5 cut(s) 144, 153, 1070, 1397, 1406
NdeI CATATG 1 cut(s) 742
NlaIII CATG 9 cut(s) 247, 650, 1363, 1406, 1475, 1613, 1702, 1805, 2007
NlaIV GGNNCC 4 cut(s) 139, 148, 546, 808
NmuCI GTSAC 2 cut(s) 209, 1755
NspI RCATGY 3 cut(s) 247, 1475, 2007
PagI TCATGA 2 cut(s) 1609, 1801
PciI ACATGT 1 cut(s) 1471
PctI GAATGC 2 cut(s) 1066, 1654
PfoI TCCNGGA 2 cut(s) 71, 661
PkrI GCNGC 2 cut(s) 283, 1004
PleI GAGTC 1 cut(s) 1815
PpsI GAGTC 1 cut(s) 1815
PpuMI RGGWCCY 1 cut(s) 476
PscI ACATGT 1 cut(s) 1471
PshBI ATTAAT 1 cut(s) 1313
PsiI TTATAA 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 3 cut(s) 71, 661, 1581
PspGI CCWGG 3 cut(s) 71, 661, 1581
PspN4I GGNNCC 4 cut(s) 139, 148, 546, 808
PspPI GGNCC 6 cut(s) 476, 544, 650, 911, 1492, 1521
PspPPI RGGWCCY 1 cut(s) 476
PstI CTGCAG 2 cut(s) 1192, 1210
PsuI RGATCY 3 cut(s) 17, 1087, 1289
RsaI GTAC 3 cut(s) 517, 808, 1512
RsaNI GTAC 3 cut(s) 516, 807, 1511
RseI CAYNNNNRTG 2 cut(s) 1703, 1800
SaqAI TTAA 6 cut(s) 351, 407, 551, 588, 1172, 1313
SatI GCNGC 2 cut(s) 282, 1003
Sau96I GGNCC 6 cut(s) 476, 544, 650, 911, 1492, 1521
SchI GAGTC 1 cut(s) 1816
ScrFI CCNGG 3 cut(s) 73, 663, 1583
SduI GDGCHC 2 cut(s) 488, 1411
SfaNI GCATC 1 cut(s) 1495
SfcI CTRYAG 3 cut(s) 1074, 1188, 1206
SinI GGWCC 3 cut(s) 476, 650, 911
SmiMI CAYNNNNRTG 2 cut(s) 1703, 1800
SmlI CTYRAG 2 cut(s) 262, 1117
SmoI CTYRAG 2 cut(s) 262, 1117
SsiI CCGC 3 cut(s) 269, 282, 1658
SspI AATATT 1 cut(s) 1624
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 3 cut(s) 71, 661, 1581
StyI CCWWGG 2 cut(s) 291, 653
TaaI ACNGT 3 cut(s) 127, 329, 1579
TaiI ACGT 1 cut(s) 1372
TaqI TCGA 5 cut(s) 390, 495, 1052, 1092, 1166
TatI WGTACW 1 cut(s) 515
TauI GCSGC 1 cut(s) 284
Tru1I TTAA 6 cut(s) 351, 407, 551, 588, 1172, 1313
Tru9I TTAA 6 cut(s) 351, 407, 551, 588, 1172, 1313
TscAI CASTG 3 cut(s) 604, 1048, 1204
TseFI GTSAC 2 cut(s) 209, 1755
TseI GCWGC 1 cut(s) 1002
Tsp45I GTSAC 2 cut(s) 209, 1755
TspDTI ATGAA 9 cut(s) 17, 555, 698, 933, 1248, 1475, 1598, 1632, 1790
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 3 cut(s) 604, 1048, 1204
VneI GTGCAC 1 cut(s) 1407
VpaK11BI GGWCC 3 cut(s) 476, 650, 911
VspI ATTAAT 1 cut(s) 1313
XapI RAATTY 6 cut(s) 59, 353, 705, 1162, 1250, 1498
XceI RCATGY 3 cut(s) 247, 1475, 2007
XcmI CCANNNNNNNNNTGG 1 cut(s) 1853
XmiI GTMKAC 1 cut(s) 1366
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.