Rh7DG302800

protein At4g18490 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
34761570 .. 34795743
34174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG302800.1

Sequence Viewer

Length: 291 bp
ATGGTGGGTGTCAATGCTAATGCTGCACAATATGGAACCAAATTGCTCACTACCCCGGTGTTAGTTGATAAAGAAACAAAAGTCAGACCTAAACTAAAGATGGATAACTTTGCAACAGCAAGAAACATGAAACAATATTCTCTAGTTAAAAGACAGGACTACCAAAAAACTTGCAGCTACACTGGCATCCAAGGAACTTCAAGCATGTTGAAGAGGACCACCAGTGGGTCAGATAAAGGTACATATTATATCATGTTGCCTGCTTTGGTTGAGACAAAACCGTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.77

Weight (kDa)

9.86

Isoelectric Point (pI)

21.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 2 cut(s) 201, 211
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 266
ApeKI GCWGC 2 cut(s) 23, 174
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 10, 186
BccI CCATC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 24, 175
BlsI GCNGC 2 cut(s) 25, 176
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 54, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 187, 222
BseDI CCNNGG 2 cut(s) 54, 190
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 225
BseNI ACTGG 2 cut(s) 187, 222
BseXI GCAGC 2 cut(s) 10, 186
BsgI GTGCAG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 187, 222
BssECI CCNNGG 2 cut(s) 54, 190
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 261
BstF5I GGATG 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 266
BstMWI GCNNNNNNNGC 2 cut(s) 23, 183
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 10, 186
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 180, 229
Cac8I GCNNGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 127, 205, 253
CviJI RGCY 1 cut(s) 177
CviKI_1 RGCY 1 cut(s) 177
CviQI GTAC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 3 cut(s) 130, 208, 256
FaiI YATR 6 cut(s) 33, 128, 206, 244, 249, 254
FatI CATG 3 cut(s) 126, 204, 252
Fnu4HI GCNGC 2 cut(s) 24, 175
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 24, 175
FspBI CTAG 1 cut(s) 143
GluI GCNGC 2 cut(s) 24, 175
HapII CCGG 1 cut(s) 56
Hin1II CATG 3 cut(s) 130, 208, 256
HpaII CCGG 1 cut(s) 56
Hpy188I TCNGA 3 cut(s) 86, 232, 290
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 26, 113, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 183
Hsp92II CATG 3 cut(s) 130, 208, 256
LpnPI CCDG 5 cut(s) 69, 140, 168, 235, 273
Lsp1109I GCAGC 2 cut(s) 10, 186
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 143
MboII GAAGA 2 cut(s) 223, 277
MluCI AATT 1 cut(s) 41
MnlI CCTC 1 cut(s) 207
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 23, 183
NciI CCSGG 1 cut(s) 56
NlaIII CATG 3 cut(s) 130, 208, 256
NlaIV GGNNCC 1 cut(s) 37
NspI RCATGY 1 cut(s) 208
PkrI GCNGC 2 cut(s) 25, 176
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 24, 175
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 56
SetI ASST 3 cut(s) 91, 179, 241
SfaNI GCATC 1 cut(s) 195
SinI GGWCC 1 cut(s) 216
Sse9I AATT 1 cut(s) 41
SspI AATATT 1 cut(s) 137
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 282
TasI AATT 1 cut(s) 41
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 187, 229
TseI GCWGC 2 cut(s) 23, 174
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 2 cut(s) 187, 229
VpaK11BI GGWCC 1 cut(s) 216
XceI RCATGY 1 cut(s) 208
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.