Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001455

Physical Location & Seq

Genomic Coordinates Forward (+)

14681919 .. 14682912

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG168600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGTAAGGAAAATTGTATTCAAATGGAGGGCTCTGATTCTGACGATTTACCAAATGAGACCAAACTAATTGGGGATCCACAGCTGTGTGACAAAGAAGTAACAGAAAGGGAACTTGTGGTTTGCATTCATGAGAACCATTTGGAGATCAAGACTAAGAGCCTTGGTAGCATGGTGAATGTGATGGAACTTGAACTTCTTTCAGCAATGGAAATTGATGAAAATGTTGAAAAGGTCAAGCATATACCAAGTAACTTGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

9.94

Weight (kDa)

4.57

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490
fragaria_vesca	FvH4_5g25370 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040
malus_domestica	MD05G1304700.v1.1 MD05G1304800.v1.1 MD10G1283800.v1.1
prunus_persica	Prupe.4G057700_v2.0.a1 Prupe.4G057700_v2.0.a1
pyrus_communis	pycom05g28200 pycom05g28990 pycom10g23670
rosa_chinensis	RchiOBHm_Chr7g0215591 RchiOBHm_Chr7g0216741
rosa_laevigata	RLG00000002542 RLG00000002543 RLG00000002645
rosa_multiflora	Rmu_sc0000898.1_g000086 Rmu_sc0003814.1_g000007 Rmu_sc0007602.1_g000013 Rmu_sc0009814.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242970 Rroxscaffold_3G00244080
rosa_rugosa	Rorug06G0072200 Rorug07G0154800 Rorug07G0154900 Rorug07G0162000 Rorug07G0162100
rosa_samantha	Rh2BG169600 Rh2DG168600 Rh7AG291100 Rh7AG303000 Rh7BG283200 Rh7BG293700 Rh7CG311100 Rh7CG321700 Rh7DG294900 Rh7DG302600 Rh7DG302700 Rh7DG302800
rosa_wichuraiana	Rw6G016300 Rw7G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	71, 84
AgsI	TTSAA	4 cut(s)	23, 194, 230, 259
AleI	CACNNNNGTG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	71, 84
AsuHPI	GGTGA	1 cut(s)	187
BamHI	GGATCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	35
BccI	CCATC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	76, 147
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	71, 84
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	76, 147
BssT1I	CCWWGG	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	79, 150
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	76, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
CciI	TCATGA	1 cut(s)	130
CviAII	CATG	2 cut(s)	131, 172
CviJI	RGCY	3 cut(s)	33, 85, 162
CviKI_1	RGCY	3 cut(s)	33, 85, 162
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	78, 149
DpnII	GATC	2 cut(s)	76, 147
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	134, 175
FaiI	YATR	4 cut(s)	132, 173, 243, 245
FatI	CATG	2 cut(s)	130, 171
FriOI	GRGCYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	134, 175
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	37, 43
Hpy188III	TCNNGA	2 cut(s)	131, 151
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	134, 175
Kzo9I	GATC	2 cut(s)	76, 147
MaeIII	GTNAC	3 cut(s)	89, 100, 251
MalI	GATC	2 cut(s)	78, 149
MboI	GATC	2 cut(s)	76, 147
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	13, 69, 213
MnlI	CCTC	1 cut(s)	22
MslI	CAYNNNNRTG	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	2 cut(s)	76, 147
NlaIII	CATG	2 cut(s)	134, 175
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	130
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	76, 147
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	2 cut(s)	87, 237
SgeI	CNNG	8 cut(s)	128, 143, 163, 176, 184, 203, 250, 261
SmiMI	CAYNNNNRTG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	13, 69, 213
StyI	CCWWGG	1 cut(s)	163
TasI	AATT	3 cut(s)	13, 69, 213
TfiI	GAWTC	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	119, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.