Rroxscaffold_3G00242970

protein At4g18490 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
35509598 .. 35513789
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242970.1

Sequence Viewer

Length: 1791 bp
ATGAGGAAATCGGCCGATTTCCTCAGCTCCTGGAAATCCATGTCAGTAATGAAAGATGACTGGATGGATTTCAGCCTTGATACAGGGGCCAAAATCAAGAAGAAAGTGTTTGACTTTGATAAGCTGGATATGGATTTCAATCTAGATGGTGATTTCGACAAGATATCATCTTTCAAAATGGACATGTCTGATTTCGACTTCTCAAGCCCCCCAAAAAAGATGTTGGATAGTTTTGATCTCGATTCAACTTTGTCGAAACGAGAAAAAGGTTCTAAAAAGAACCAAGATAGCAGCAAAGAGGTTGTCTATGATGGAGCTGGGTGTGGAGGCTCTAAAGTCGATCTAGCTGAAGGGATTATTAGTACACTTGATGGTGAATCTGAGACAGTGGCCACATCAAAGATTAATACTTTGTTAGTTGATCTGGGGAATACTAATTCTATGAATGAACTTGCCTCAAAGTCTGAGACCTCTGGAAATTTTGAATTGCCTTCTGGTCCAAGATGTCAAGAAAATATAATGTCTAAAAGCATAGAAGGGTCAAATCAACAAAGCCACTTACCTGAGGAGACAATGCCCATAGAACCATATGCTGAACAGACAATACATGATCTGCCTGCTGAACTTGTAGGAGGGGTTGATTTGAATGGGGATGCTGGTGTAGACGGAAAGAATGGTGGCTGTCCTCAGATCAAAAAAGTAAATATCATTTCAAGTGGAAAAGAAGCTATTAATGACAAAATGATGATAGAAGATGGTCCCAATCATGAAGACTTTCCTTTTAAAAATTCATCTCCATTAGATATTGGTAGAGTGGGGAGCAGTTATGGTGATAGGAGCATGTCAGACAGTGATACTTTGACAGAAAATGATGAACCAGCTAAAGGTGATTTAGATAATGGAGAGACTTTGGCTTCAGTGGTCTCCAGGAAGACATCGCACAACATCAACAGTATCAAGGGAACCCAAAACTCAAGTTTAAAGCTTCCTTTGTCTACGCAGGCCAGTGAATCTACAGTTGATAAAGATACGCTGAGAAAGGAAAGCGGGGCTGGAGAACTCTGCTCGAAGATTTCTAAGAGATTGGAAAACACTGGACCTCAATTGTATCAACCGCCATTAATAGGAGGAAAATCTCTCTCGTCTGGAAACAACAAAGTTGGTTCCATGTATCTAAGCCCTGCACTTGAGAAAGGGGTGGGTGTCAATGCTAATGCTGCACAATATGGAACCAAATTGCTCACTACCCTGGTGATAGTTGATAAAGAAACAAAAGTCAGACCTGTAATACCTGGAAGGGAGGGCTCTGATTCTGACGGTGTACCAAATGAGACCAAACTAGTTGGGGATCCACAGCTGTGTGACAAAGAAAACCTTCAAGGGAAACATCTGATTGTTGATATAAGATTTCTGGCCATGTGTTACTTCCTTGCAGGGTTCAAGAATATTGGTGGCAATAAACCTTTTTTGAATGCTCCACCTCAAAAAGGAGTTAAAACCCAGAGGAGTTCAGAGCAAAACAAGGAGCTGCATCGCAATGTGGAATTGAAAACTAGGCAGATTGTTGATTGCAGTGAAAAAATGCCACAAAACCTTTCCCTGAAACGAAAAGCATTTGAGGTTTGCATTCGTGAGAACCATTTGGAGACCAAGACTAAGAGCCCAAGCTCTAGAGTTGGTAGAATGGTCAATGTGATGGAACTTGAATTTACTTCAGCAATGGAGACTGATGAAAATGTTGAAAAGGCTGAAGCATATACCAAGGAGCTTGAAGATGTGAGTAAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

596

Amino Acids

65.08

Weight (kDa)

5.16

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 663, 995
AciI CCGC 2 cut(s) 1047, 1115
AclWI GGATC 2 cut(s) 1343, 1356
AcoI YGGCCR 3 cut(s) 12, 390, 1413
AcsI RAATTY 3 cut(s) 478, 787, 1706
AcuI CTGAAG 4 cut(s) 369, 900, 1698, 1770
AfaI GTAC 2 cut(s) 364, 1323
AfiI CCNNNNNNNGG 3 cut(s) 884, 1124, 1487
AflIII ACRYGT 1 cut(s) 183
AhlI ACTAGT 1 cut(s) 1339
AjnI CCWGG 4 cut(s) 29, 926, 1248, 1291
AleI CACNNNNGTG 1 cut(s) 1357
Alw26I GTCTC 8 cut(s) 377, 461, 563, 899, 928, 1325, 1640, 1718
AlwI GGATC 2 cut(s) 1343, 1356
AlwNI CAGNNNCTG 1 cut(s) 30
AoxI GGCC 5 cut(s) 12, 87, 390, 1002, 1413
ApeKI GCWGC 3 cut(s) 291, 1217, 1528
ApoI RAATTY 3 cut(s) 478, 787, 1706
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AseI ATTAAT 3 cut(s) 405, 732, 1121
Asp700I GAANNNNTTC 2 cut(s) 774, 1374
AspS9I GGNCC 4 cut(s) 87, 497, 758, 1097
AsuHPI GGTGA 5 cut(s) 161, 386, 842, 899, 1264
AvaII GGWCC 3 cut(s) 497, 758, 1097
AxyI CCTNAGG 1 cut(s) 564
BalI TGGCCA 2 cut(s) 392, 1415
BamHI GGATCC 1 cut(s) 1348
BanII GRGCYC 2 cut(s) 1307, 1664
BbsI GAAGAC 2 cut(s) 777, 938
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 303, 1204, 1515
BccI CCATC 6 cut(s) 58, 140, 305, 365, 749, 1690
BciT130I CCWGG 4 cut(s) 31, 928, 1250, 1293
BcoDI GTCTC 8 cut(s) 377, 461, 563, 899, 928, 1325, 1640, 1718
BcuI ACTAGT 1 cut(s) 1339
BfaI CTAG 5 cut(s) 143, 344, 1340, 1554, 1671
BfmI CTRYAG 1 cut(s) 1014
BisI GCNGC 3 cut(s) 292, 1218, 1529
BlsI GCNGC 3 cut(s) 293, 1219, 1530
Bme1390I CCNGG 4 cut(s) 31, 928, 1250, 1293
Bme18I GGWCC 3 cut(s) 497, 758, 1097
BmgT120I GGNCC 4 cut(s) 87, 497, 758, 1097
BmiI GGNNCC 6 cut(s) 88, 760, 964, 1165, 1231, 1350
BmrFI CCNGG 4 cut(s) 31, 928, 1250, 1293
BmsI GCATC 2 cut(s) 643, 1540
BpiI GAAGAC 2 cut(s) 777, 938
BpmI CTGGAG 2 cut(s) 910, 1074
Bpu10I CCTNAGC 1 cut(s) 23
BpuEI CTTGAG 3 cut(s) 187, 958, 1208
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 4 cut(s) 461, 928, 1325, 1640
BsaJI CCNNGG 2 cut(s) 1248, 1761
Bsc4I CCNNNNNNNGG 3 cut(s) 884, 1124, 1487
Bse1I ACTGG 3 cut(s) 65, 1005, 1099
Bse21I CCTNAGG 1 cut(s) 564
Bse3DI GCAATG 2 cut(s) 1543, 1725
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 4 cut(s) 31, 928, 1250, 1293
BseDI CCNNGG 2 cut(s) 1248, 1761
BseGI GGATG 2 cut(s) 69, 658
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 884, 1124, 1487
BseMI GCAATG 2 cut(s) 1543, 1725
BseMII CTCAG 6 cut(s) 37, 372, 456, 555, 701, 1025
BseNI ACTGG 3 cut(s) 65, 1005, 1099
BseRI GAGGAG 2 cut(s) 581, 1519
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 3 cut(s) 303, 1204, 1515
BseYI CCCAGC 1 cut(s) 317
BsgI GTGCAG 2 cut(s) 1167, 1203
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 5 cut(s) 14, 89, 392, 1004, 1415
BsiEI CGRYCG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 744
BslI CCNNNNNNNGG 3 cut(s) 884, 1124, 1487
BsmAI GTCTC 8 cut(s) 377, 461, 563, 899, 928, 1325, 1640, 1718
BsmFI GGGAC 1 cut(s) 744
BsmI GAATGC 2 cut(s) 1477, 1626
BsnI GGCC 5 cut(s) 14, 89, 392, 1004, 1415
Bso31I GGTCTC 4 cut(s) 461, 928, 1325, 1640
Bsp1286I GDGCHC 2 cut(s) 1307, 1664
Bsp143I GATC 6 cut(s) 235, 340, 421, 610, 690, 1348
BspACI CCGC 2 cut(s) 1047, 1115
BspANI GGCC 5 cut(s) 14, 89, 392, 1004, 1415
BspCNI CTCAG 6 cut(s) 36, 373, 457, 556, 700, 1026
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 6 cut(s) 88, 760, 964, 1165, 1231, 1350
BspPI GGATC 2 cut(s) 1343, 1356
BspTNI GGTCTC 4 cut(s) 461, 928, 1325, 1640
BsrDI GCAATG 2 cut(s) 1543, 1725
BsrI ACTGG 3 cut(s) 65, 1005, 1099
BssECI CCNNGG 2 cut(s) 1248, 1761
BssMI GATC 6 cut(s) 235, 340, 421, 610, 690, 1348
BssT1I CCWWGG 1 cut(s) 1761
Bst2UI CCWGG 4 cut(s) 31, 928, 1250, 1293
Bst4CI ACNGT 5 cut(s) 388, 851, 953, 1018, 1319
BstC8I GCNNGC 2 cut(s) 618, 1002
BstDEI CTNAG 9 cut(s) 23, 381, 465, 564, 687, 1034, 1077, 1175, 1656
BstENI CCTNNNNNAGG 1 cut(s) 1485
BstF5I GGATG 2 cut(s) 69, 658
BstKTI GATC 6 cut(s) 238, 343, 424, 613, 693, 1351
BstMAI GTCTC 8 cut(s) 377, 461, 563, 899, 928, 1325, 1640, 1718
BstMBI GATC 6 cut(s) 235, 340, 421, 610, 690, 1348
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 1217
BstNI CCWGG 4 cut(s) 31, 928, 1250, 1293
BstNSI RCATGY 2 cut(s) 187, 844
BstSCI CCNGG 4 cut(s) 29, 926, 1248, 1291
BstSFI CTRYAG 1 cut(s) 1014
BstV1I GCAGC 3 cut(s) 303, 1204, 1515
BstV2I GAAGAC 2 cut(s) 777, 938
BstX2I RGATCY 1 cut(s) 1348
BstYI RGATCY 1 cut(s) 1348
BstZI CGGCCG 1 cut(s) 12
Bsu36I CCTNAGG 1 cut(s) 564
BsuRI GGCC 5 cut(s) 14, 89, 392, 1004, 1415
BtgZI GCGATG 2 cut(s) 921, 1517
BtsCI GGATG 2 cut(s) 69, 658
BtsI GCAGTG 1 cut(s) 1579
BtsIMutI CAGTG 6 cut(s) 393, 856, 924, 1012, 1092, 1579
Cac8I GCNNGC 2 cut(s) 618, 1002
CaiI CAGNNNCTG 1 cut(s) 30
CciI TCATGA 1 cut(s) 766
Cfr13I GGNCC 4 cut(s) 87, 497, 758, 1097
Csp6I GTAC 2 cut(s) 363, 1322
CviAII CATG 7 cut(s) 40, 184, 608, 767, 841, 1168, 1417
CviQI GTAC 2 cut(s) 363, 1322
DdeI CTNAG 9 cut(s) 23, 381, 465, 564, 687, 1034, 1077, 1175, 1656
DpnI GATC 6 cut(s) 237, 342, 423, 612, 692, 1350
DpnII GATC 6 cut(s) 235, 340, 421, 610, 690, 1348
DraI TTTAAA 2 cut(s) 784, 981
EaeI YGGCCR 3 cut(s) 12, 390, 1413
EagI CGGCCG 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 1761
Eco24I GRGCYC 2 cut(s) 1307, 1664
Eco31I GGTCTC 4 cut(s) 461, 928, 1325, 1640
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 3 cut(s) 497, 758, 1097
Eco52I CGGCCG 1 cut(s) 12
Eco57I CTGAAG 4 cut(s) 369, 900, 1698, 1770
Eco81I CCTNAGG 1 cut(s) 564
EcoNI CCTNNNNNAGG 1 cut(s) 1485
EcoRII CCWGG 4 cut(s) 29, 926, 1248, 1291
EcoRV GATATC 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 1761
EcoT38I GRGCYC 2 cut(s) 1307, 1664
ErhI CCWWGG 1 cut(s) 1761
FaeI CATG 7 cut(s) 43, 187, 611, 770, 844, 1171, 1420
FalI AAGNNNNNCTT 2 cut(s) 1359, 1391
FaqI GGGAC 1 cut(s) 744
FatI CATG 7 cut(s) 39, 183, 607, 766, 840, 1167, 1416
FauI CCCGC 1 cut(s) 1040
FauNDI CATATG 1 cut(s) 589
FblI GTMKAC 2 cut(s) 663, 995
Fnu4HI GCNGC 3 cut(s) 292, 1218, 1529
FokI GGATG 2 cut(s) 76, 665
FriOI GRGCYC 2 cut(s) 1307, 1664
Fsp4HI GCNGC 3 cut(s) 292, 1218, 1529
FspBI CTAG 5 cut(s) 143, 344, 1340, 1554, 1671
GluI GCNGC 3 cut(s) 292, 1218, 1529
GsaI CCCAGC 1 cut(s) 321
GsuI CTGGAG 2 cut(s) 910, 1074
HaeIII GGCC 5 cut(s) 14, 89, 392, 1004, 1415
Hin1II CATG 7 cut(s) 43, 187, 611, 770, 844, 1171, 1420
HindIII AAGCTT 1 cut(s) 983
HinfI GANTC 4 cut(s) 242, 377, 1010, 1310
HphI GGTGA 5 cut(s) 161, 386, 842, 899, 1264
Hpy166II GTNNAC 5 cut(s) 365, 664, 996, 1322, 1784
Hpy8I GTNNAC 5 cut(s) 365, 664, 996, 1322, 1784
HpyAV CCTTC 5 cut(s) 344, 501, 530, 1290, 1385
HpyCH4III ACNGT 5 cut(s) 388, 851, 953, 1018, 1319
HpyCH4V TGCA 6 cut(s) 1184, 1220, 1433, 1531, 1572, 1626
HpyF10VI GCNNNNNNNGC 1 cut(s) 1217
HpyF3I CTNAG 9 cut(s) 23, 381, 465, 564, 687, 1034, 1077, 1175, 1656
Hsp92II CATG 7 cut(s) 43, 187, 611, 770, 844, 1171, 1420
Kzo9I GATC 6 cut(s) 235, 340, 421, 610, 690, 1348
LmnI GCTCC 7 cut(s) 32, 314, 819, 837, 1480, 1525, 1765
Lsp1109I GCAGC 3 cut(s) 303, 1204, 1515
LweI GCATC 2 cut(s) 643, 1540
MaeI CTAG 5 cut(s) 143, 344, 1340, 1554, 1671
MaeIII GTNAC 2 cut(s) 1361, 1421
MalI GATC 6 cut(s) 237, 342, 423, 612, 692, 1350
MboI GATC 6 cut(s) 235, 340, 421, 610, 690, 1348
MboII GAAGA 6 cut(s) 112, 764, 782, 943, 1081, 1784
MfeI CAATTG 1 cut(s) 1103
MflI RGATCY 1 cut(s) 1348
MhlI GDGCHC 2 cut(s) 1307, 1664
MlsI TGGCCA 2 cut(s) 392, 1415
MluCI AATT 8 cut(s) 436, 478, 485, 787, 1103, 1235, 1544, 1706
MluNI TGGCCA 2 cut(s) 392, 1415
MmeI TCCRAC 1 cut(s) 204
Mox20I TGGCCA 2 cut(s) 392, 1415
MroXI GAANNNNTTC 2 cut(s) 774, 1374
MscI TGGCCA 2 cut(s) 392, 1415
MseI TTAA 6 cut(s) 405, 732, 783, 980, 1121, 1494
MslI CAYNNNNRTG 2 cut(s) 1357, 1536
Msp20I TGGCCA 2 cut(s) 392, 1415
MspA1I CMGCKG 1 cut(s) 1357
MspR9I CCNGG 4 cut(s) 31, 928, 1250, 1293
MunI CAATTG 1 cut(s) 1103
Mva1269I GAATGC 2 cut(s) 1477, 1626
MvaI CCWGG 4 cut(s) 31, 928, 1250, 1293
MwoI GCNNNNNNNGC 1 cut(s) 1217
NdeI CATATG 1 cut(s) 589
NdeII GATC 6 cut(s) 235, 340, 421, 610, 690, 1348
NlaIII CATG 7 cut(s) 43, 187, 611, 770, 844, 1171, 1420
NlaIV GGNNCC 6 cut(s) 88, 760, 964, 1165, 1231, 1350
NmuCI GTSAC 1 cut(s) 1361
NspI RCATGY 2 cut(s) 187, 844
OliI CACNNNNGTG 1 cut(s) 1357
PagI TCATGA 1 cut(s) 766
PciI ACATGT 1 cut(s) 183
PctI GAATGC 2 cut(s) 1477, 1626
PdmI GAANNNNTTC 2 cut(s) 774, 1374
PfeI GAWTC 4 cut(s) 242, 377, 1010, 1310
PfoI TCCNGGA 2 cut(s) 29, 926
PkrI GCNGC 3 cut(s) 293, 1219, 1530
PscI ACATGT 1 cut(s) 183
PshBI ATTAAT 3 cut(s) 405, 732, 1121
Psp6I CCWGG 4 cut(s) 29, 926, 1248, 1291
PspFI CCCAGC 1 cut(s) 317
PspGI CCWGG 4 cut(s) 29, 926, 1248, 1291
PspN4I GGNNCC 6 cut(s) 88, 760, 964, 1165, 1231, 1350
PspPI GGNCC 4 cut(s) 87, 497, 758, 1097
PsrI GAACNNNNNNTAC 2 cut(s) 588, 620
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 1348
PvuII CAGCTG 1 cut(s) 1357
RsaI GTAC 2 cut(s) 364, 1323
RsaNI GTAC 2 cut(s) 363, 1322
RseI CAYNNNNRTG 2 cut(s) 1357, 1536
SaqAI TTAA 6 cut(s) 405, 732, 783, 980, 1121, 1494
SatI GCNGC 3 cut(s) 292, 1218, 1529
Sau3AI GATC 6 cut(s) 235, 340, 421, 610, 690, 1348
Sau96I GGNCC 4 cut(s) 87, 497, 758, 1097
ScrFI CCNGG 4 cut(s) 31, 928, 1250, 1293
SduI GDGCHC 2 cut(s) 1307, 1664
SfaNI GCATC 2 cut(s) 643, 1540
SfcI CTRYAG 1 cut(s) 1014
SinI GGWCC 3 cut(s) 497, 758, 1097
SmiMI CAYNNNNRTG 2 cut(s) 1357, 1536
SmlI CTYRAG 3 cut(s) 202, 973, 1187
SmoI CTYRAG 3 cut(s) 202, 973, 1187
SpeI ACTAGT 1 cut(s) 1339
Sse9I AATT 8 cut(s) 436, 478, 485, 787, 1103, 1235, 1544, 1706
SsiI CCGC 2 cut(s) 1047, 1115
SspI AATATT 1 cut(s) 1447
SspMI CTAG 5 cut(s) 143, 344, 1340, 1554, 1671
StyD4I CCNGG 4 cut(s) 29, 926, 1248, 1291
StyI CCWWGG 1 cut(s) 1761
TaaI ACNGT 5 cut(s) 388, 851, 953, 1018, 1319
TaqI TCGA 6 cut(s) 156, 195, 240, 254, 339, 1067
TasI AATT 8 cut(s) 436, 478, 485, 787, 1103, 1235, 1544, 1706
TatI WGTACW 1 cut(s) 362
TfiI GAWTC 4 cut(s) 242, 377, 1010, 1310
Tru1I TTAA 6 cut(s) 405, 732, 783, 980, 1121, 1494
Tru9I TTAA 6 cut(s) 405, 732, 783, 980, 1121, 1494
TscAI CASTG 6 cut(s) 393, 856, 924, 1012, 1099, 1579
TseFI GTSAC 1 cut(s) 1361
TseI GCWGC 3 cut(s) 291, 1217, 1528
Tsp45I GTSAC 1 cut(s) 1361
TspDTI ATGAA 7 cut(s) 65, 458, 462, 780, 783, 888, 1746
TspGWI ACGGA 1 cut(s) 681
TspRI CASTG 6 cut(s) 393, 856, 924, 1012, 1099, 1579
VpaK11BI GGWCC 3 cut(s) 497, 758, 1097
VspI ATTAAT 3 cut(s) 405, 732, 1121
XagI CCTNNNNNAGG 1 cut(s) 1485
XapI RAATTY 3 cut(s) 478, 787, 1706
XbaI TCTAGA 2 cut(s) 142, 1670
XceI RCATGY 2 cut(s) 187, 844
XmiI GTMKAC 2 cut(s) 663, 995
XmnI GAANNNNTTC 2 cut(s) 774, 1374
XspI CTAG 5 cut(s) 143, 344, 1340, 1554, 1671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.