Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009814.1

Orthogroup ID

OG0001455

Physical Location & Seq

Genomic Coordinates Forward (+)

244 .. 1504

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009814.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 773 bp

atggcagaaccatcaaaggggaaatcatcctctgctgatcaaaagaaaaaaagctcttttctagatgaggaaattggtgacgatttcctcagctcctggaaatcaatgtcagtaatgaaagatgatgggatggatttcagctttgatgcaggggccaaaagcaagaaaaaagtgtttgactttgataagctggatatggatttcaatctagacggtgacttcaacaagatatcatctttcaaaatggacatgtctgattttgacttctcaagcccgcccaaaaaagatgcgaaaaccaaggaagttgacacgtcagaccttgatttatcaagccctcccaaaaaagctgcaaaaaccaaggaaagatctgaagaagaaccttccacaggaagccgtcaagggaaacaagaccattttaaattctcttttgatttcaatgagttagatagttttgatctcgattcaactttgtcgagaagagaaaagagttttaagaaccaagatagcagcaaagaggttgtctctgatggagctgggtgtgaaggctctaaagtcgatctagcagaagggattagtaaacttgatggtgtatctgagacagtagccacatcaaagattgatactgtgttagttgatccagggaatactaattctatgaatgactgtgcatcagagtctgagacctctggaaattttgaattgccacctggtccaagatgtcaagaacaaataatgtctgaaagcatagaagagtcaaatcaacaaagtgacgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.39

Weight (kDa)

4.5

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490
fragaria_vesca	FvH4_5g25370 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040
malus_domestica	MD05G1304700.v1.1 MD05G1304800.v1.1 MD10G1283800.v1.1
prunus_persica	Prupe.4G057700_v2.0.a1 Prupe.4G057700_v2.0.a1
pyrus_communis	pycom05g28200 pycom05g28990 pycom10g23670
rosa_chinensis	RchiOBHm_Chr7g0215591 RchiOBHm_Chr7g0216741
rosa_laevigata	RLG00000002542 RLG00000002543 RLG00000002645
rosa_multiflora	Rmu_sc0000898.1_g000086 Rmu_sc0003814.1_g000007 Rmu_sc0007602.1_g000013 Rmu_sc0009814.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242970 Rroxscaffold_3G00244080
rosa_rugosa	Rorug06G0072200 Rorug07G0154800 Rorug07G0154900 Rorug07G0162000 Rorug07G0162100
rosa_samantha	Rh2BG169600 Rh2DG168600 Rh7AG291100 Rh7AG303000 Rh7BG283200 Rh7BG293700 Rh7CG311100 Rh7CG321700 Rh7DG294900 Rh7DG302600 Rh7DG302700 Rh7DG302800
rosa_wichuraiana	Rw6G016300 Rw7G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	419, 691
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	2 cut(s)	17, 386
AflIII	ACRYGT	2 cut(s)	249, 309
AgsI	TTSAA	6 cut(s)	205, 223, 241, 436, 465, 698
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	3 cut(s)	95, 637, 706
AluBI	AGCT	6 cut(s)	54, 93, 141, 190, 347, 533
AluI	AGCT	6 cut(s)	54, 93, 141, 190, 347, 533
Alw26I	GTCTC	3 cut(s)	526, 590, 674
AlwI	GGATC	1 cut(s)	629
AlwNI	CAGNNNCTG	2 cut(s)	96, 677
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	347, 507
ApoI	RAATTY	2 cut(s)	419, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AspS9I	GGNCC	2 cut(s)	153, 710
AsuHPI	GGTGA	2 cut(s)	89, 227
AvaII	GGWCC	1 cut(s)	710
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	334, 519
BccI	CCATC	5 cut(s)	19, 119, 124, 521, 578
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	3 cut(s)	97, 639, 708
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	3 cut(s)	526, 590, 674
BfaI	CTAG	3 cut(s)	62, 209, 560
BglII	AGATCT	1 cut(s)	365
BisI	GCNGC	2 cut(s)	348, 508
BlsI	GCNGC	2 cut(s)	349, 509
Bme1390I	CCNGG	3 cut(s)	97, 639, 708
Bme18I	GGWCC	1 cut(s)	710
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	153, 710
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	3 cut(s)	97, 639, 708
BmsI	GCATC	3 cut(s)	136, 277, 677
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
Bpu10I	CCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	297, 357, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 386
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	97, 639, 708
BseDI	CCNNGG	3 cut(s)	297, 357, 638
BseGI	GGATG	2 cut(s)	26, 135
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	17, 386
BseMII	CTCAG	3 cut(s)	103, 585, 669
BseXI	GCAGC	2 cut(s)	334, 519
BseYI	CCCAGC	1 cut(s)	533
BshFI	GGCC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	17, 386
BsmAI	GTCTC	3 cut(s)	526, 590, 674
BsnI	GGCC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	674
Bsp143I	GATC	5 cut(s)	37, 365, 454, 556, 634
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	102, 586, 670
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	674
BssECI	CCNNGG	3 cut(s)	297, 357, 638
BssMI	GATC	5 cut(s)	37, 365, 454, 556, 634
BssT1I	CCWWGG	2 cut(s)	297, 357
Bst2UI	CCWGG	3 cut(s)	97, 639, 708
Bst4CI	ACNGT	4 cut(s)	215, 601, 625, 665
Bst6I	CTCTTC	2 cut(s)	472, 744
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	3 cut(s)	89, 594, 678
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	26, 135
BstKTI	GATC	5 cut(s)	40, 368, 457, 559, 637
BstMAI	GTCTC	3 cut(s)	526, 590, 674
BstMBI	GATC	5 cut(s)	37, 365, 454, 556, 634
BstNI	CCWGG	3 cut(s)	97, 639, 708
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	3 cut(s)	95, 637, 706
BstV1I	GCAGC	2 cut(s)	334, 519
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	26, 135
Cac8I	GCNNGC	1 cut(s)	275
CaiI	CAGNNNCTG	2 cut(s)	96, 677
Cfr13I	GGNCC	2 cut(s)	153, 710
CsiI	ACCWGGT	1 cut(s)	706
CviAII	CATG	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	89, 594, 678
DpnI	GATC	5 cut(s)	39, 367, 456, 558, 636
DpnII	GATC	5 cut(s)	37, 365, 454, 556, 634
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	472, 744
EarI	CTCTTC	2 cut(s)	472, 744
Eco130I	CCWWGG	2 cut(s)	297, 357
Eco31I	GGTCTC	1 cut(s)	674
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	3 cut(s)	95, 637, 706
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	297, 357
ErhI	CCWWGG	2 cut(s)	297, 357
FaeI	CATG	1 cut(s)	253
FaiI	YATR	4 cut(s)	197, 251, 656, 746
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	282
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	348, 508
FokI	GGATG	2 cut(s)	13, 142
Fsp4HI	GCNGC	2 cut(s)	348, 508
FspBI	CTAG	3 cut(s)	62, 209, 560
GluI	GCNGC	2 cut(s)	348, 508
GsaI	CCCAGC	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	461, 674, 752
HphI	GGTGA	2 cut(s)	89, 227
Hpy166II	GTNNAC	2 cut(s)	307, 578
Hpy188I	TCNGA	8 cut(s)	256, 316, 370, 526, 595, 673, 679, 739
Hpy188III	TCNNGA	6 cut(s)	62, 209, 458, 474, 687, 722
Hpy8I	GTNNAC	2 cut(s)	307, 578
HpyAV	CCTTC	3 cut(s)	390, 536, 560
HpyCH4III	ACNGT	4 cut(s)	215, 601, 625, 665
HpyCH4IV	ACGT	2 cut(s)	311, 771
HpyCH4V	TGCA	3 cut(s)	149, 350, 668
HpyF3I	CTNAG	3 cut(s)	89, 594, 678
HpySE526I	ACGT	2 cut(s)	311, 771
Hsp92II	CATG	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	5 cut(s)	37, 365, 454, 556, 634
LmnI	GCTCC	2 cut(s)	98, 530
Lsp1109I	GCAGC	2 cut(s)	334, 519
LweI	GCATC	3 cut(s)	136, 277, 677
MabI	ACCWGGT	1 cut(s)	706
MaeI	CTAG	3 cut(s)	62, 209, 560
MaeII	ACGT	2 cut(s)	311, 771
MaeIII	GTNAC	3 cut(s)	77, 215, 767
MalI	GATC	5 cut(s)	39, 367, 456, 558, 636
MboI	GATC	5 cut(s)	37, 365, 454, 556, 634
MboII	GAAGA	4 cut(s)	383, 386, 489, 761
MflI	RGATCY	1 cut(s)	365
MluCI	AATT	5 cut(s)	72, 419, 649, 691, 698
MlyI	GAGTC	2 cut(s)	683, 761
MnlI	CCTC	6 cut(s)	40, 61, 98, 345, 508, 694
MseI	TTAA	2 cut(s)	417, 492
MspR9I	CCNGG	3 cut(s)	97, 639, 708
MvaI	CCWGG	3 cut(s)	97, 639, 708
NdeII	GATC	5 cut(s)	37, 365, 454, 556, 634
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	3 cut(s)	77, 215, 767
NspI	RCATGY	1 cut(s)	253
PciI	ACATGT	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	349, 509
PleI	GAGTC	2 cut(s)	682, 760
PpsI	GAGTC	2 cut(s)	682, 760
PscI	ACATGT	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	95, 637, 706
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	3 cut(s)	95, 637, 706
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	153, 710
PstNI	CAGNNNCTG	2 cut(s)	96, 677
PsuI	RGATCY	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	417, 492
SatI	GCNGC	2 cut(s)	348, 508
Sau3AI	GATC	5 cut(s)	37, 365, 454, 556, 634
Sau96I	GGNCC	2 cut(s)	153, 710
SchI	GAGTC	2 cut(s)	683, 761
ScrFI	CCNGG	3 cut(s)	97, 639, 708
SexAI	ACCWGGT	1 cut(s)	706
SfaNI	GCATC	3 cut(s)	136, 277, 677
SinI	GGWCC	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	5 cut(s)	72, 419, 649, 691, 698
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	3 cut(s)	62, 209, 560
StyD4I	CCNGG	3 cut(s)	95, 637, 706
StyI	CCWWGG	2 cut(s)	297, 357
TaaI	ACNGT	4 cut(s)	215, 601, 625, 665
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	3 cut(s)	459, 473, 555
TasI	AATT	5 cut(s)	72, 419, 649, 691, 698
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	417, 492
Tru9I	TTAA	2 cut(s)	417, 492
TseFI	GTSAC	3 cut(s)	77, 215, 767
TseI	GCWGC	2 cut(s)	347, 507
Tsp45I	GTSAC	3 cut(s)	77, 215, 767
TspDTI	ATGAA	2 cut(s)	131, 671
VpaK11BI	GGWCC	1 cut(s)	710
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	2 cut(s)	419, 691
XbaI	TCTAGA	2 cut(s)	61, 208
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	3 cut(s)	62, 209, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.