Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001455

Physical Location & Seq

Genomic Coordinates Reverse (-)

29000858 .. 29001622

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCTGACAAATGAAAGCAAAAGTGGAGAATTCCACTCAAAGATTTCTAAGAGATTGAAGGAAGTTGGATCTCAAATGTGTCAGCCATCATTAATAGGAGCAAAATCTCTCTCATCTGGTTTCGTCGGGATTGATACCATGCATCTACGTCCTGCAATTGAGGAAAGGGTGGTTACTAATGCTCATGATGCACAAATTGGAAGCAAATTGCATGATACTCCCCTGTTAGTTGATAAAGAAACAAAAGCCAAACATGTAATATCGGGAAGAGAGGACCTCATGTCTGATGGTGTACCAAACAGGGCCAAACTGGTTCGCAATTCACGGCTGTCTGACAAAGAAGTAACAGAAAGGGAACCTGTCCTGGGAAGTGGACTGAGAAAAAGTCATCATGATCCAAGGCAAGCTTATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.27

Weight (kDa)

9.33

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490
fragaria_vesca	FvH4_5g25370 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040
malus_domestica	MD05G1304700.v1.1 MD05G1304800.v1.1 MD10G1283800.v1.1
prunus_persica	Prupe.4G057700_v2.0.a1 Prupe.4G057700_v2.0.a1
pyrus_communis	pycom05g28200 pycom05g28990 pycom10g23670
rosa_chinensis	RchiOBHm_Chr7g0215591 RchiOBHm_Chr7g0216741
rosa_laevigata	RLG00000002542 RLG00000002543 RLG00000002645
rosa_multiflora	Rmu_sc0000898.1_g000086 Rmu_sc0003814.1_g000007 Rmu_sc0007602.1_g000013 Rmu_sc0009814.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242970 Rroxscaffold_3G00244080
rosa_rugosa	Rorug06G0072200 Rorug07G0154800 Rorug07G0154900 Rorug07G0162000 Rorug07G0162100
rosa_samantha	Rh2BG169600 Rh2DG168600 Rh7AG291100 Rh7AG303000 Rh7BG283200 Rh7BG293700 Rh7CG311100 Rh7CG321700 Rh7DG294900 Rh7DG302600 Rh7DG302700 Rh7DG302800
rosa_wichuraiana	Rw6G016300 Rw7G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	76, 389
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	58
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
AlwI	GGATC	2 cut(s)	76, 389
AoxI	GGCC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	274, 303
AvaII	GGWCC	1 cut(s)	274
BccI	CCATC	2 cut(s)	94, 281
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	274, 303
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	151, 178
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BsaJI	CCNNGG	2 cut(s)	364, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	364, 398
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	68, 394
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	369
BspHI	TCATGA	2 cut(s)	184, 391
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	2 cut(s)	76, 389
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	364, 398
BssMI	GATC	2 cut(s)	68, 394
BssT1I	CCWWGG	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	48, 377
BstKTI	GATC	2 cut(s)	71, 397
BstMBI	GATC	2 cut(s)	68, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	2 cut(s)	184, 391
Cfr13I	GGNCC	2 cut(s)	274, 303
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	6 cut(s)	139, 185, 212, 254, 280, 392
CviJI	RGCY	5 cut(s)	85, 248, 305, 328, 407
CviKI_1	RGCY	5 cut(s)	85, 248, 305, 328, 407
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	48, 377
DpnI	GATC	2 cut(s)	70, 396
DpnII	GATC	2 cut(s)	68, 394
DriI	GACNNNNNGTC	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	262
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	6 cut(s)	142, 188, 215, 257, 283, 395
FaiI	YATR	6 cut(s)	140, 186, 213, 255, 281, 393
FalI	AAGNNNNNCTT	1 cut(s)	391
FatI	CATG	6 cut(s)	138, 184, 211, 253, 279, 391
HaeIII	GGCC	1 cut(s)	305
Hin1II	CATG	6 cut(s)	142, 188, 215, 257, 283, 395
HindIII	AAGCTT	1 cut(s)	405
Hpy166II	GTNNAC	2 cut(s)	293, 374
Hpy188I	TCNGA	2 cut(s)	286, 334
Hpy188III	TCNNGA	4 cut(s)	127, 185, 264, 392
Hpy8I	GTNNAC	2 cut(s)	293, 374
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	4 cut(s)	142, 155, 191, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	48, 377
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	6 cut(s)	142, 188, 215, 257, 283, 395
Kzo9I	GATC	2 cut(s)	68, 394
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	8 cut(s)	102, 165, 236, 286, 296, 350, 372, 377
LweI	GCATC	2 cut(s)	151, 178
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	172, 343
MalI	GATC	2 cut(s)	70, 396
MboI	GATC	2 cut(s)	68, 394
MboII	GAAGA	1 cut(s)	279
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	68
MluCI	AATT	5 cut(s)	29, 156, 195, 206, 319
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	154, 265, 287
Mph1103I	ATGCAT	1 cut(s)	144
MseI	TTAA	2 cut(s)	92, 415
MspR9I	CCNGG	1 cut(s)	365
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	68, 394
NlaIII	CATG	6 cut(s)	142, 188, 215, 257, 283, 395
NlaIV	GGNNCC	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	2 cut(s)	184, 391
PciI	ACATGT	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	274
PscI	ACATGT	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	274, 303
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	92, 415
Sau3AI	GATC	2 cut(s)	68, 394
Sau96I	GGNCC	2 cut(s)	274, 303
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	4 cut(s)	151, 279, 361, 409
SfaNI	GCATC	2 cut(s)	151, 178
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	5 cut(s)	29, 156, 195, 206, 319
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	398
TaiI	ACGT	1 cut(s)	151
TasI	AATT	5 cut(s)	29, 156, 195, 206, 319
Tru1I	TTAA	2 cut(s)	92, 415
Tru9I	TTAA	2 cut(s)	92, 415
TspDTI	ATGAA	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	274
VspI	ATTAAT	1 cut(s)	92
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.