Rh7CG321700

protein At4g18490 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
34789511 .. 34797530
8020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG321700.1

Sequence Viewer

Length: 1905 bp
ATGGCAGAACCATCCAAGGTGAAATCTTCCTCTGCCGATCAAAATAAAAAAAGCTCATTTCTAGATGAGGAAATTGGTGACGATTTCCTCAGCTCCTGGAAATCCATGTCAGTAATGAAAGATGACGGGATGGATTTCAGCCTTGATACAGGGGCCAAAAGCAAGAAGAAAGTGTTTGACTTTGATAAGCTGGATATGGATTTCAATCTAGATGGTGACTTCAACAAGATATCATCTTTCAAAATGGACATGTCTGATTTCGACTTCTCAAGCCCCCCCAAAAAAGATGCAAAAACCAAGGAAGTTGACATGTCAGACCTTGATTTATCAAGCCCTCCCAAAAAAGCTGCAAAAACCAAGGAAAGATCCGAAGAAGAACCCTCCAGAGGAAGCCGTCAAAGGAAACAAGACACATTTAAATTCTCCTTTGATTTCAATGAGTTGGATAGTTTTGATCTCGGTTCAACTTTGTCGAAACGAGAAAAGGGTTCTAAAAAGAACCAAGATAGCAGCAAAGAGGTTGTCTATGATGGAGCTGGGTGTGGAGGCTCTAAATTTGATCTAGCTGAAGGGATTAGTACACTTGATGGTGAATCTGAGACAGTGGCCACATCAAAGATTAATACTTTGTTAGTTGATCCGGGGAATACTAATTCTATGAATGAACTTGCCTCAAAGTCTGAGACCTCTGGAAATTTTGAATTGCCTTCTGGTCCAAGATGTCAAGAAAATATAATGTCTAAAAGCATAGAAGGGTCAAATCAACAAAGCCACTTACCTGAGGAGACAACGCCGATAGAACCATATGCTGAACAGACAATACATGATCTGCCTGCTGAACTTGTAGGAGGAGTTGATTTGAATGGGGATGCTGGTGTAGACGGAAAGAATGGTGGCTGTCCTCAGATCAAAAAAGTAAATATCATTTCAAGTGGAAAAGAAGCTGTTAATGACAAAATGATGATACAAGATGGTGCTCATCATGAAGACTTTCCTTTTAAAAATTCATCTCCATTAGATATTGGTAGATTGGGGAGCAGTTATGGTGATAGGAGCATGTCAGACAGTGATACTTTGACAGAAAATGATGAACCAGCTAAAGGTGATTTAGATAATGGAGAGACTTTGGCTTCAGTGGTCTCCAGGAAGACACCGCACAACATCAACAGTATCAAGGGAACCCAAAACTCAACTTTAAAGCTTCCTTTGTCTACACAGGCCAGTGAATCTACAGTTGATAGAGTTACGCTGAGAAAGGAAAGCAGGGCTGGAGAACTCTGCTCGAAGATTTCTAAGGGATTGGAAAACACTGGACCTCAGTTGTATCAACCGCCATTAATAGGAGGAAAATCTCTCTCGTCTGGAAACAACAAAGTTGGTTCCATGTATATAAGCCCTGCACTTGAGAAAGGGGTGGTTGTCAATGCTAATGCTGCACAATATGGAACCAGATTGCTCACTACCCCGGTGTTAGTTGATAAAGAAACAAAAGTCAGACCTGTAATACCTGGAAGGGAGGGCTCTGATTCTGACGGTGTACCAAACGAGACCAAACTAGTTGGGGATCCACAGCTGTGTGACAAAGAAATAACAGAAAGGGAACCTGTAGAAGGAAGTGAGCAGAGAAAAAATCCTAAAGATCTCAGGGTTCAAGTGAGTTCTTCCAGCTCAACTGATAAGACAAGAAAACATAGTAGTCAAAGTGTCAAACCTAAGATCATGCTCCCAAGCGTGGAGCCAATAAGGAAATCAAAGATCATTACTGCTGAAGGGAATAAACATTGTCCTGACAAACCAACCTGGAAAATATCCAAGTATGATGCTTGTATCATTGTTTCTCTTTTTCAGTTACTCTCTAGAATTGTTCTGATTGTCATTTTGAATTTTATTGATATGTATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

634

Amino Acids

69.09

Weight (kDa)

5.31

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 879, 1211
AciI CCGC 2 cut(s) 1154, 1331
AclWI GGATC 4 cut(s) 360, 632, 1559, 1572
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 5 cut(s) 419, 554, 694, 1003, 1882
AcuI CTGAAG 3 cut(s) 588, 1116, 1788
AfaI GTAC 2 cut(s) 580, 1539
AfiI CCNNNNNNNGG 5 cut(s) 386, 1100, 1340, 1610, 1732
AflIII ACRYGT 2 cut(s) 249, 309
AhlI ACTAGT 1 cut(s) 1555
AjnI CCWGG 4 cut(s) 95, 1142, 1507, 1799
AleI CACNNNNGTG 1 cut(s) 1573
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 6 cut(s) 593, 677, 779, 1115, 1144, 1541
AlwI GGATC 4 cut(s) 360, 632, 1559, 1572
AlwNI CAGNNNCTG 1 cut(s) 96
AoxI GGCC 3 cut(s) 153, 606, 1218
ApeKI GCWGC 3 cut(s) 347, 510, 1433
ApoI RAATTY 5 cut(s) 419, 554, 694, 1003, 1882
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
AseI ATTAAT 2 cut(s) 621, 1337
Asp700I GAANNNNTTC 1 cut(s) 990
AspS9I GGNCC 3 cut(s) 153, 713, 1313
AsuC2I CCSGG 2 cut(s) 642, 1466
AsuHPI GGTGA 6 cut(s) 31, 89, 227, 602, 1058, 1115
AvaII GGWCC 2 cut(s) 713, 1313
AxyI CCTNAGG 1 cut(s) 780
BalI TGGCCA 1 cut(s) 608
BamHI GGATCC 1 cut(s) 1564
BanII GRGCYC 1 cut(s) 1523
BbsI GAAGAC 2 cut(s) 993, 1154
Bbv12I GWGCWC 1 cut(s) 979
BbvCI CCTCAGC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 334, 522, 1420
BccI CCATC 6 cut(s) 19, 124, 206, 524, 581, 965
BceAI ACGGC 1 cut(s) 378
BciT130I CCWGG 4 cut(s) 97, 1144, 1509, 1801
BcnI CCSGG 2 cut(s) 642, 1466
BcoDI GTCTC 6 cut(s) 593, 677, 779, 1115, 1144, 1541
BcuI ACTAGT 1 cut(s) 1555
BfaI CTAG 5 cut(s) 62, 209, 563, 1556, 1857
BfmI CTRYAG 2 cut(s) 1230, 1605
BglII AGATCT 1 cut(s) 1639
BisI GCNGC 3 cut(s) 348, 511, 1434
BlsI GCNGC 3 cut(s) 349, 512, 1435
Bme1390I CCNGG 6 cut(s) 97, 642, 1144, 1466, 1509, 1801
Bme18I GGWCC 2 cut(s) 713, 1313
BmgT120I GGNCC 3 cut(s) 153, 713, 1313
BmiI GGNNCC 7 cut(s) 154, 1180, 1381, 1447, 1566, 1602, 1737
BmrFI CCNGG 6 cut(s) 97, 642, 1144, 1466, 1509, 1801
BmsI GCATC 3 cut(s) 277, 859, 1810
BpiI GAAGAC 2 cut(s) 993, 1154
BpmI CTGGAG 3 cut(s) 367, 1126, 1290
Bpu10I CCTNAGC 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 253, 1424
BpuMI CCSGG 2 cut(s) 642, 1466
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 3 cut(s) 677, 1144, 1541
BsaJI CCNNGG 5 cut(s) 15, 297, 357, 641, 1464
Bsc4I CCNNNNNNNGG 5 cut(s) 386, 1100, 1340, 1610, 1732
Bse1I ACTGG 2 cut(s) 1221, 1315
Bse21I CCTNAGG 1 cut(s) 780
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 4 cut(s) 97, 1144, 1509, 1801
BseDI CCNNGG 5 cut(s) 15, 297, 357, 641, 1464
BseGI GGATG 3 cut(s) 11, 135, 874
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 5 cut(s) 386, 1100, 1340, 1610, 1732
BseMII CTCAG 8 cut(s) 103, 588, 672, 771, 917, 1241, 1331, 1657
BseNI ACTGG 2 cut(s) 1221, 1315
BseRI GAGGAG 2 cut(s) 797, 864
BseXI GCAGC 3 cut(s) 334, 522, 1420
BseYI CCCAGC 1 cut(s) 536
BsgI GTGCAG 2 cut(s) 1383, 1419
BshFI GGCC 3 cut(s) 155, 608, 1220
BsiHKAI GWGCWC 1 cut(s) 979
BsiSI CCGG 2 cut(s) 641, 1466
BslI CCNNNNNNNGG 5 cut(s) 386, 1100, 1340, 1610, 1732
BsmAI GTCTC 6 cut(s) 593, 677, 779, 1115, 1144, 1541
BsnI GGCC 3 cut(s) 155, 608, 1220
Bso31I GGTCTC 3 cut(s) 677, 1144, 1541
Bsp1286I GDGCHC 2 cut(s) 979, 1523
BspACI CCGC 2 cut(s) 1154, 1331
BspANI GGCC 3 cut(s) 155, 608, 1220
BspCNI CTCAG 8 cut(s) 102, 589, 673, 772, 916, 1242, 1330, 1656
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 7 cut(s) 154, 1180, 1381, 1447, 1566, 1602, 1737
BspPI GGATC 4 cut(s) 360, 632, 1559, 1572
BspTNI GGTCTC 3 cut(s) 677, 1144, 1541
BsrI ACTGG 2 cut(s) 1221, 1315
BssECI CCNNGG 5 cut(s) 15, 297, 357, 641, 1464
BssT1I CCWWGG 3 cut(s) 15, 297, 357
Bst2UI CCWGG 4 cut(s) 97, 1144, 1509, 1801
Bst4CI ACNGT 5 cut(s) 604, 1067, 1169, 1234, 1535
BstC8I GCNNGC 1 cut(s) 834
BstENI CCTNNNNNAGG 1 cut(s) 1608
BstF5I GGATG 3 cut(s) 11, 135, 874
BstMAI GTCTC 6 cut(s) 593, 677, 779, 1115, 1144, 1541
BstMWI GCNNNNNNNGC 1 cut(s) 1433
BstNI CCWGG 4 cut(s) 97, 1144, 1509, 1801
BstNSI RCATGY 3 cut(s) 253, 313, 1060
BstSCI CCNGG 6 cut(s) 95, 640, 1142, 1464, 1507, 1799
BstSFI CTRYAG 2 cut(s) 1230, 1605
BstV1I GCAGC 3 cut(s) 334, 522, 1420
BstV2I GAAGAC 2 cut(s) 993, 1154
BstX2I RGATCY 3 cut(s) 365, 1564, 1639
BstYI RGATCY 3 cut(s) 365, 1564, 1639
Bsu36I CCTNAGG 1 cut(s) 780
BsuRI GGCC 3 cut(s) 155, 608, 1220
BtsCI GGATG 3 cut(s) 11, 135, 874
BtsIMutI CAGTG 5 cut(s) 609, 1072, 1140, 1228, 1308
Cac8I GCNNGC 1 cut(s) 834
CaiI CAGNNNCTG 1 cut(s) 96
CciI TCATGA 1 cut(s) 982
Cfr13I GGNCC 3 cut(s) 153, 713, 1313
Csp6I GTAC 2 cut(s) 579, 1538
CviAII CATG 8 cut(s) 106, 250, 310, 824, 983, 1057, 1384, 1720
CviQI GTAC 2 cut(s) 579, 1538
DraI TTTAAA 3 cut(s) 418, 1000, 1197
EaeI YGGCCR 1 cut(s) 606
Eco130I CCWWGG 3 cut(s) 15, 297, 357
Eco24I GRGCYC 1 cut(s) 1523
Eco31I GGTCTC 3 cut(s) 677, 1144, 1541
Eco32I GATATC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 713, 1313
Eco57I CTGAAG 3 cut(s) 588, 1116, 1788
Eco81I CCTNAGG 1 cut(s) 780
EcoNI CCTNNNNNAGG 1 cut(s) 1608
EcoRII CCWGG 4 cut(s) 95, 1142, 1507, 1799
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 3 cut(s) 15, 297, 357
EcoT38I GRGCYC 1 cut(s) 1523
ErhI CCWWGG 3 cut(s) 15, 297, 357
FaeI CATG 8 cut(s) 109, 253, 313, 827, 986, 1060, 1387, 1723
FatI CATG 8 cut(s) 105, 249, 309, 823, 982, 1056, 1383, 1719
FauNDI CATATG 1 cut(s) 805
FblI GTMKAC 2 cut(s) 879, 1211
Fnu4HI GCNGC 3 cut(s) 348, 511, 1434
FokI GGATG 2 cut(s) 142, 881
FriOI GRGCYC 1 cut(s) 1523
Fsp4HI GCNGC 3 cut(s) 348, 511, 1434
FspBI CTAG 5 cut(s) 62, 209, 563, 1556, 1857
GluI GCNGC 3 cut(s) 348, 511, 1434
GsaI CCCAGC 1 cut(s) 540
GsuI CTGGAG 3 cut(s) 367, 1126, 1290
HaeIII GGCC 3 cut(s) 155, 608, 1220
HapII CCGG 2 cut(s) 641, 1466
Hin1II CATG 8 cut(s) 109, 253, 313, 827, 986, 1060, 1387, 1723
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 1199
HinfI GANTC 3 cut(s) 593, 1226, 1526
HpaII CCGG 2 cut(s) 641, 1466
HphI GGTGA 6 cut(s) 31, 89, 227, 602, 1058, 1115
Hpy166II GTNNAC 5 cut(s) 307, 581, 880, 1212, 1538
Hpy188III TCNNGA 9 cut(s) 62, 209, 384, 690, 725, 983, 1362, 1787, 1857
Hpy8I GTNNAC 5 cut(s) 307, 581, 880, 1212, 1538
HpyAV CCTTC 6 cut(s) 563, 717, 746, 1506, 1604, 1763
HpyCH4III ACNGT 5 cut(s) 604, 1067, 1169, 1234, 1535
HpyCH4V TGCA 4 cut(s) 290, 350, 1400, 1436
HpyF10VI GCNNNNNNNGC 1 cut(s) 1433
Hsp92II CATG 8 cut(s) 109, 253, 313, 827, 986, 1060, 1387, 1723
LmnI GCTCC 6 cut(s) 98, 533, 1035, 1053, 1728, 1735
Lsp1109I GCAGC 3 cut(s) 334, 522, 1420
LweI GCATC 3 cut(s) 277, 859, 1810
MaeI CTAG 5 cut(s) 62, 209, 563, 1556, 1857
MaeIII GTNAC 5 cut(s) 77, 215, 1243, 1577, 1848
MboII GAAGA 8 cut(s) 18, 178, 383, 386, 998, 1159, 1297, 1653
MflI RGATCY 3 cut(s) 365, 1564, 1639
MhlI GDGCHC 2 cut(s) 979, 1523
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 9 cut(s) 72, 419, 554, 652, 694, 701, 1003, 1860, 1882
MluNI TGGCCA 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 423
Mox20I TGGCCA 1 cut(s) 608
MroXI GAANNNNTTC 1 cut(s) 990
MscI TGGCCA 1 cut(s) 608
MseI TTAA 6 cut(s) 417, 621, 948, 999, 1196, 1337
MslI CAYNNNNRTG 1 cut(s) 1573
Msp20I TGGCCA 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 1573
MspI CCGG 2 cut(s) 641, 1466
MspR9I CCNGG 6 cut(s) 97, 642, 1144, 1466, 1509, 1801
MvaI CCWGG 4 cut(s) 97, 1144, 1509, 1801
MwoI GCNNNNNNNGC 1 cut(s) 1433
NciI CCSGG 2 cut(s) 642, 1466
NdeI CATATG 1 cut(s) 805
NlaIII CATG 8 cut(s) 109, 253, 313, 827, 986, 1060, 1387, 1723
NlaIV GGNNCC 7 cut(s) 154, 1180, 1381, 1447, 1566, 1602, 1737
NmuCI GTSAC 3 cut(s) 77, 215, 1577
NspI RCATGY 3 cut(s) 253, 313, 1060
OliI CACNNNNGTG 1 cut(s) 1573
PagI TCATGA 1 cut(s) 982
PciI ACATGT 2 cut(s) 249, 309
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 3 cut(s) 593, 1226, 1526
PfoI TCCNGGA 2 cut(s) 95, 1142
PkrI GCNGC 3 cut(s) 349, 512, 1435
PscI ACATGT 2 cut(s) 249, 309
PshBI ATTAAT 2 cut(s) 621, 1337
Psp6I CCWGG 4 cut(s) 95, 1142, 1507, 1799
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 4 cut(s) 95, 1142, 1507, 1799
PspN4I GGNNCC 7 cut(s) 154, 1180, 1381, 1447, 1566, 1602, 1737
PspPI GGNCC 3 cut(s) 153, 713, 1313
PsrI GAACNNNNNNTAC 2 cut(s) 804, 836
PstNI CAGNNNCTG 1 cut(s) 96
PsuI RGATCY 3 cut(s) 365, 1564, 1639
PvuII CAGCTG 1 cut(s) 1573
RsaI GTAC 2 cut(s) 580, 1539
RsaNI GTAC 2 cut(s) 579, 1538
RseI CAYNNNNRTG 1 cut(s) 1573
SaqAI TTAA 6 cut(s) 417, 621, 948, 999, 1196, 1337
SatI GCNGC 3 cut(s) 348, 511, 1434
Sau96I GGNCC 3 cut(s) 153, 713, 1313
ScrFI CCNGG 6 cut(s) 97, 642, 1144, 1466, 1509, 1801
SduI GDGCHC 2 cut(s) 979, 1523
SfaNI GCATC 3 cut(s) 277, 859, 1810
SfcI CTRYAG 2 cut(s) 1230, 1605
SinI GGWCC 2 cut(s) 713, 1313
SmiI ATTTAAAT 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 1573
SmlI CTYRAG 2 cut(s) 268, 1403
SmoI CTYRAG 2 cut(s) 268, 1403
SpeI ACTAGT 1 cut(s) 1555
Sse9I AATT 9 cut(s) 72, 419, 554, 652, 694, 701, 1003, 1860, 1882
SsiI CCGC 2 cut(s) 1154, 1331
SspMI CTAG 5 cut(s) 62, 209, 563, 1556, 1857
StyD4I CCNGG 6 cut(s) 95, 640, 1142, 1464, 1507, 1799
StyI CCWWGG 3 cut(s) 15, 297, 357
SwaI ATTTAAAT 1 cut(s) 418
TaaI ACNGT 5 cut(s) 604, 1067, 1169, 1234, 1535
TaqI TCGA 3 cut(s) 261, 473, 1283
TasI AATT 9 cut(s) 72, 419, 554, 652, 694, 701, 1003, 1860, 1882
TatI WGTACW 1 cut(s) 578
TfiI GAWTC 3 cut(s) 593, 1226, 1526
Tru1I TTAA 6 cut(s) 417, 621, 948, 999, 1196, 1337
Tru9I TTAA 6 cut(s) 417, 621, 948, 999, 1196, 1337
TscAI CASTG 5 cut(s) 609, 1072, 1140, 1228, 1315
TseFI GTSAC 3 cut(s) 77, 215, 1577
TseI GCWGC 3 cut(s) 347, 510, 1433
Tsp45I GTSAC 3 cut(s) 77, 215, 1577
TspDTI ATGAA 6 cut(s) 131, 674, 678, 996, 999, 1104
TspGWI ACGGA 1 cut(s) 897
TspRI CASTG 5 cut(s) 609, 1072, 1140, 1228, 1315
VpaK11BI GGWCC 2 cut(s) 713, 1313
VspI ATTAAT 2 cut(s) 621, 1337
XagI CCTNNNNNAGG 1 cut(s) 1608
XapI RAATTY 5 cut(s) 419, 554, 694, 1003, 1882
XbaI TCTAGA 3 cut(s) 61, 208, 1856
XceI RCATGY 3 cut(s) 253, 313, 1060
XmiI GTMKAC 2 cut(s) 879, 1211
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 5 cut(s) 62, 209, 563, 1556, 1857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.