Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001455

Physical Location & Seq

Genomic Coordinates Forward (+)

31959603 .. 31961315

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAACCCTTCCACGCACAGACGATTGGAGAACGGGAGGGCTCTGATTCTGACTGTTTACCAAATGAGACCAAACTAGTTGGGTATCCACAGGTGTGTGACAAAGAAGTAACAGAAAGGCAACCTGTAGTAGGAAGTGTGCAGAGAAAAAATATTAAAGATCTCAGGTGGCAGAGAGAGCTCTGTTTCTGTGGAACAACGATCACATTGAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

8.24

Weight (kDa)

5.75

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490
fragaria_vesca	FvH4_5g25370 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040
malus_domestica	MD05G1304700.v1.1 MD05G1304800.v1.1 MD10G1283800.v1.1
prunus_persica	Prupe.4G057700_v2.0.a1 Prupe.4G057700_v2.0.a1
pyrus_communis	pycom05g28200 pycom05g28990 pycom10g23670
rosa_chinensis	RchiOBHm_Chr7g0215591 RchiOBHm_Chr7g0216741
rosa_laevigata	RLG00000002542 RLG00000002543 RLG00000002645
rosa_multiflora	Rmu_sc0000898.1_g000086 Rmu_sc0003814.1_g000007 Rmu_sc0007602.1_g000013 Rmu_sc0009814.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242970 Rroxscaffold_3G00244080
rosa_rugosa	Rorug06G0072200 Rorug07G0154800 Rorug07G0154900 Rorug07G0162000 Rorug07G0162100
rosa_samantha	Rh2BG169600 Rh2DG168600 Rh7AG291100 Rh7AG303000 Rh7BG283200 Rh7BG293700 Rh7CG311100 Rh7CG321700 Rh7DG294900 Rh7DG302600 Rh7DG302700 Rh7DG302800
rosa_wichuraiana	Rw6G016300 Rw7G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	131
AhlI	ACTAGT	1 cut(s)	76
AleI	CACNNNNGTG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	44, 183
Bbv12I	GWGCWC	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	62
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	96
BglII	AGATCT	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	44, 183
Bsp143I	GATC	2 cut(s)	160, 201
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	62
BssMI	GATC	2 cut(s)	160, 201
Bst4CI	ACNGT	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstKTI	GATC	2 cut(s)	163, 204
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	160, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	96
CviJI	RGCY	2 cut(s)	42, 181
CviKI_1	RGCY	2 cut(s)	42, 181
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	2 cut(s)	162, 203
DpnII	GATC	2 cut(s)	160, 201
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	44, 183
Eco31I	GGTCTC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	44, 183
FriOI	GRGCYC	2 cut(s)	44, 183
FspBI	CTAG	1 cut(s)	77
HinfI	GANTC	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	46, 52
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	160, 201
LpnPI	CCDG	3 cut(s)	77, 138, 151
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	98, 109
MalI	GATC	2 cut(s)	162, 203
MboI	GATC	2 cut(s)	160, 201
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	44, 183
MnlI	CCTC	1 cut(s)	31
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	2 cut(s)	160, 201
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	160, 201
SduI	GDGCHC	2 cut(s)	44, 183
SetI	ASST	4 cut(s)	96, 127, 170, 183
SfcI	CTRYAG	1 cut(s)	126
SgeI	CNNG	6 cut(s)	26, 47, 89, 104, 137, 178
SmiMI	CAYNNNNRTG	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	76
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	129
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.