Rorug07G0162000

protein At4g18490 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
12998904 .. 13002326
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0162000.1

Sequence Viewer

Length: 1770 bp
ATGGGTGGTGACCTGAGGTGGGAGTTTAGGAGGAAGGACAATGGCGATGAGTCTTCAAGTGATGAATCTAAATCAAGTAGTGAGGCGGCTCACGAGAAGCATAAACTGGTTTCCTCTTTGAGTTCGGTTGAAAATGATGAAGAAATTGGAACTCATAGAGTCAAGCAGAATGTCACGAGCAATCCTCATACTGAGGTTAAAATTATGTCTGGGAAAGGCAAAAATGTGCACTCACAAAGGAGTGGAAAGGAAAGTTCAATTCATGATGGCACAGAGAGGGATTCTCATGAAGAAGGCAGTAGAAAAAAGAGTAAAACCAGTGTTTATGAGCCTGCTGCCATGGATGAGATTAAGAGATTCATGGAGTCCTTATTAGAGGATCTTAAAGTGACAAGAGAAAATTTGTTTTCATGGATGAGGCAGGAAATGCAAAGATTGGTGACAGATGATACTCTTCCACCTCTTGAACGGAGAGAACAAAGTTTTGGAGCGAAAAATCTCCTAGTGCAACATGGAGAAATCGTTGAGAACACCACCTCCAAGGAGAATAGACAAGTGAACAAAAGAAAGTTTGAAGAGAATATTCAGATTCGTCATCAAAATAACTATCCAGAACATCTTTCGGTGCCGCATGAAACCAACTTTGAGGATAATGTATTTGCACGACATCATAACAACTTAAAGGAGACAATCCAAGTGCAGCATCAGAACAACTCCGAAGAGGCAGATGTTCAAGTGCAATGTCGAAGCAACTTTGAATCTGGCATGAGAGCTCAAAAATGTAATATTGGATCTTTGGAGGGTACTGCTAGAAGCAATCAAGCAAGTGGTTATGATAATGGCTATCGAGTACTTGGAAAACAAGTTGATAATGGCCGAGACACTAGATCCTTGATACCAAGGGAAAAGTTTGGTTCATTTGTCAAGCCAAATTTTCAGTCCTGTTCCACAGAAATTAATGTCCAGAGGCAGCATCAGACAAACTATCTATTAGGCATAAGACCTCCAAATTACAATTGCAGATCTTTGGAGAGTCCTTTGAAAGGCAAAGAGAGAGCTCAATCTAATAATTGCCATCCATGGATCGAACATCAAGTTGATTGTGTTCGAGATGCAACAGGTCCATCATCTGAAATAGAACCATCATCTGAAATAGAAAGAGGAGCGAGGTTGACAGTACCAGTCGAGTCAAGTTTTTCTTCCAATGTTTCCAGTCAGGTAGCTTCTTCCATGTATTTGACATTACCCTCTGTGTTAACTAGGCCCTATGGTGAGGACCCTATCCTTGGCACTTCTTCATATAGTTATATTCAACCAACAGTTGCCGGAAACAGATTAGGCATGAACTATGAGAAAGCAAACACAATGCTCAAAGTAAATGCTCATTATGGAAACTTTACAGGCATGAGTCACCAAGTAAGAAATGGAAGCATTGCTCAAACAGGGTCCCAAAATGTGAGTTATAGTGATAGGCAAAGCATCCCTAGTTCAAGTATTGGAACTGGGTTCCCGGTTGCACTTCATCAAGGTATGGATTTTGGTGTTAGCTTTCCAAGCCAAGCAAGTATCGAATATCTTCCTCGAGATGAAAAGAACATAAGGGGTTTGAGGATGAATGAAGGAGCCAAAATGTTCTCCGGAGGAAGCTATGCTGTACCTGAAGACTATGTTTCCAACAATTTTTTCAGTCGTTCTATTAGTAAACCTCAAGGTACACTTCAAGCATTTCAAAAAGAAAACCTTGAAAAGGGCAATATGTTCCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

589

Amino Acids

66.27

Weight (kDa)

6.72

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 625
AccIII TCCGGA 1 cut(s) 1637
AciI CCGC 2 cut(s) 86, 629
AclWI GGATC 4 cut(s) 387, 799, 882, 1091
AcoI YGGCCR 1 cut(s) 874
AcsI RAATTY 2 cut(s) 400, 931
AcuI CTGAAG 1 cut(s) 1680
AfaI GTAC 5 cut(s) 805, 852, 1179, 1656, 1714
AfiI CCNNNNNNNGG 4 cut(s) 19, 1043, 1286, 1747
AjuI GAANNNNNNNTTGG 4 cut(s) 468, 500, 1667, 1699
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 5 cut(s) 773, 1058, 1223, 1548, 1647
AluI AGCT 5 cut(s) 773, 1058, 1223, 1548, 1647
Alw21I GWGCWC 3 cut(s) 231, 775, 1060
Alw26I GTCTC 2 cut(s) 680, 873
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 4 cut(s) 387, 799, 882, 1091
Ama87I CYCGRG 1 cut(s) 1581
Aor13HI TCCGGA 1 cut(s) 1637
AoxI GGCC 2 cut(s) 874, 1262
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 3 cut(s) 335, 700, 970
ApoI RAATTY 2 cut(s) 400, 931
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
AseI ATTAAT 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 1575
AspS9I GGNCC 4 cut(s) 1121, 1263, 1276, 1446
AsuC2I CCSGG 1 cut(s) 1511
AsuHPI GGTGA 4 cut(s) 20, 451, 1283, 1403
AvaI CYCGRG 1 cut(s) 1581
AvaII GGWCC 3 cut(s) 1121, 1276, 1446
AxyI CCTNAGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 2 cut(s) 775, 1060
BauI CACGAG 2 cut(s) 92, 175
BbsI GAAGAC 2 cut(s) 45, 1668
Bbv12I GWGCWC 3 cut(s) 231, 775, 1060
BbvI GCAGC 3 cut(s) 322, 712, 982
BccI CCATC 4 cut(s) 260, 1083, 1132, 1150
BcnI CCSGG 1 cut(s) 1511
BcoDI GTCTC 2 cut(s) 680, 873
BfaI CTAG 5 cut(s) 503, 810, 885, 1260, 1485
BglII AGATCT 1 cut(s) 1022
BisI GCNGC 5 cut(s) 87, 336, 629, 701, 971
BlsI GCNGC 5 cut(s) 88, 337, 630, 702, 972
BmcAI AGTACT 1 cut(s) 852
Bme1390I CCNGG 1 cut(s) 1511
Bme18I GGWCC 3 cut(s) 1121, 1276, 1446
BmeT110I CYCGRG 1 cut(s) 1581
BmgT120I GGNCC 4 cut(s) 1121, 1263, 1276, 1446
BmiI GGNNCC 6 cut(s) 627, 1278, 1447, 1448, 1508, 1624
BmrFI CCNGG 1 cut(s) 1511
BmrI ACTGGG 1 cut(s) 1512
BmsI GCATC 4 cut(s) 712, 982, 1102, 1488
BmuI ACTGGG 1 cut(s) 1512
BpiI GAAGAC 2 cut(s) 45, 1668
BplI GAGNNNNNCTC 4 cut(s) 169, 201, 268, 300
BpuEI CTTGAG 1 cut(s) 1692
BpuMI CCSGG 1 cut(s) 1511
BsaJI CCNNGG 5 cut(s) 339, 540, 899, 1079, 1285
BsaWI WCCGGW 1 cut(s) 1637
BsaXI ACNNNNNCTCC 4 cut(s) 507, 521, 537, 551
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 1043, 1286, 1747
Bse1I ACTGG 5 cut(s) 111, 318, 1181, 1212, 1507
Bse21I CCTNAGG 1 cut(s) 14
Bse3DI GCAATG 2 cut(s) 746, 1431
BseAI TCCGGA 1 cut(s) 1637
BseDI CCNNGG 5 cut(s) 339, 540, 899, 1079, 1285
BseGI GGATG 5 cut(s) 349, 420, 1075, 1479, 1617
BseLI CCNNNNNNNGG 4 cut(s) 19, 1043, 1286, 1747
BseMI GCAATG 2 cut(s) 746, 1431
BseMII CTCAG 2 cut(s) 5, 183
BseNI ACTGG 5 cut(s) 111, 318, 1181, 1212, 1507
BseRI GAGGAG 1 cut(s) 1176
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 3 cut(s) 322, 712, 982
BsgI GTGCAG 1 cut(s) 719
BshFI GGCC 2 cut(s) 876, 1264
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 3 cut(s) 231, 775, 1060
BsiHKCI CYCGRG 1 cut(s) 1581
BsiSI CCGG 3 cut(s) 1326, 1511, 1638
BslFI GGGAC 1 cut(s) 1432
BslI CCNNNNNNNGG 4 cut(s) 19, 1043, 1286, 1747
BsmAI GTCTC 2 cut(s) 680, 873
BsmFI GGGAC 1 cut(s) 1432
BsnI GGCC 2 cut(s) 876, 1264
BsoBI CYCGRG 1 cut(s) 1581
Bsp1286I GDGCHC 3 cut(s) 231, 775, 1060
Bsp13I TCCGGA 1 cut(s) 1637
Bsp143I GATC 5 cut(s) 379, 791, 887, 1022, 1083
Bsp19I CCATGG 2 cut(s) 339, 1079
BspACI CCGC 2 cut(s) 86, 629
BspANI GGCC 2 cut(s) 876, 1264
BspCNI CTCAG 2 cut(s) 6, 184
BspEI TCCGGA 1 cut(s) 1637
BspHI TCATGA 2 cut(s) 262, 286
BspLI GGNNCC 6 cut(s) 627, 1278, 1447, 1448, 1508, 1624
BspPI GGATC 4 cut(s) 387, 799, 882, 1091
BspT107I GGYRCC 1 cut(s) 625
BsrDI GCAATG 2 cut(s) 746, 1431
BsrI ACTGG 5 cut(s) 111, 318, 1181, 1212, 1507
BssECI CCNNGG 5 cut(s) 339, 540, 899, 1079, 1285
BssMI GATC 5 cut(s) 379, 791, 887, 1022, 1083
BssSI CACGAG 2 cut(s) 92, 175
BssT1I CCWWGG 5 cut(s) 339, 540, 899, 1079, 1285
Bst2BI CACGAG 2 cut(s) 92, 175
Bst4CI ACNGT 2 cut(s) 1177, 1321
Bst6I CTCTTC 3 cut(s) 459, 570, 714
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 14, 192
BstDSI CCRYGG 2 cut(s) 339, 1079
BstEII GGTNACC 1 cut(s) 8
BstENI CCTNNNNNAGG 2 cut(s) 1041, 1745
BstF5I GGATG 5 cut(s) 349, 420, 1075, 1479, 1617
BstKTI GATC 5 cut(s) 382, 794, 890, 1025, 1086
BstMAI GTCTC 2 cut(s) 680, 873
BstMBI GATC 5 cut(s) 379, 791, 887, 1022, 1083
BstMWI GCNNNNNNNGC 2 cut(s) 427, 1554
BstPI GGTNACC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 1509
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 322, 712, 982
BstV2I GAAGAC 2 cut(s) 45, 1668
BstX2I RGATCY 4 cut(s) 379, 791, 887, 1022
BstYI RGATCY 4 cut(s) 379, 791, 887, 1022
Bsu36I CCTNAGG 1 cut(s) 14
BsuRI GGCC 2 cut(s) 876, 1264
BtgI CCRYGG 2 cut(s) 339, 1079
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 5 cut(s) 349, 420, 1075, 1479, 1617
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 2 cut(s) 262, 286
Cfr13I GGNCC 4 cut(s) 1121, 1263, 1276, 1446
Csp6I GTAC 5 cut(s) 804, 851, 1178, 1655, 1713
CviQI GTAC 5 cut(s) 804, 851, 1178, 1655, 1713
DdeI CTNAG 2 cut(s) 14, 192
DpnI GATC 5 cut(s) 381, 793, 889, 1024, 1085
DpnII GATC 5 cut(s) 379, 791, 887, 1022, 1083
EaeI YGGCCR 1 cut(s) 874
Eam1104I CTCTTC 3 cut(s) 459, 570, 714
EarI CTCTTC 3 cut(s) 459, 570, 714
Ecl136II GAGCTC 2 cut(s) 773, 1058
Eco130I CCWWGG 5 cut(s) 339, 540, 899, 1079, 1285
Eco24I GRGCYC 2 cut(s) 775, 1060
Eco47I GGWCC 3 cut(s) 1121, 1276, 1446
Eco53kI GAGCTC 2 cut(s) 773, 1058
Eco57I CTGAAG 1 cut(s) 1680
Eco81I CCTNAGG 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 1581
Eco91I GGTNACC 1 cut(s) 8
EcoICRI GAGCTC 2 cut(s) 773, 1058
EcoNI CCTNNNNNAGG 2 cut(s) 1041, 1745
EcoO109I RGGNCCY 3 cut(s) 1263, 1276, 1446
EcoO65I GGTNACC 1 cut(s) 8
EcoT14I CCWWGG 5 cut(s) 339, 540, 899, 1079, 1285
EcoT38I GRGCYC 2 cut(s) 775, 1060
ErhI CCWWGG 5 cut(s) 339, 540, 899, 1079, 1285
FalI AAGNNNNNCTT 6 cut(s) 1183, 1215, 1701, 1733, 1725, 1757
FaqI GGGAC 1 cut(s) 1432
Fnu4HI GCNGC 5 cut(s) 87, 336, 629, 701, 971
FokI GGATG 5 cut(s) 356, 427, 1062, 1466, 1624
FriOI GRGCYC 2 cut(s) 775, 1060
Fsp4HI GCNGC 5 cut(s) 87, 336, 629, 701, 971
FspBI CTAG 5 cut(s) 503, 810, 885, 1260, 1485
GluI GCNGC 5 cut(s) 87, 336, 629, 701, 971
HaeIII GGCC 2 cut(s) 876, 1264
HapII CCGG 3 cut(s) 1326, 1511, 1638
HincII GTYRAC 2 cut(s) 1173, 1257
HindII GTYRAC 2 cut(s) 1173, 1257
HpaI GTTAAC 1 cut(s) 1257
HpaII CCGG 3 cut(s) 1326, 1511, 1638
HphI GGTGA 4 cut(s) 20, 451, 1283, 1403
Hpy166II GTNNAC 6 cut(s) 229, 559, 1173, 1257, 1703, 1715
Hpy188I TCNGA 6 cut(s) 588, 708, 718, 978, 1132, 1150
Hpy8I GTNNAC 6 cut(s) 229, 559, 1173, 1257, 1703, 1715
HpyAV CCTTC 3 cut(s) 28, 287, 1613
HpyCH4III ACNGT 2 cut(s) 1177, 1321
HpyCH4V TGCA 9 cut(s) 229, 430, 508, 662, 700, 739, 1020, 1115, 1517
HpyF10VI GCNNNNNNNGC 2 cut(s) 427, 1554
HpyF3I CTNAG 2 cut(s) 14, 192
KflI GGGWCCC 1 cut(s) 1446
Kpn2I TCCGGA 1 cut(s) 1637
KspAI GTTAAC 1 cut(s) 1257
Kzo9I GATC 5 cut(s) 379, 791, 887, 1022, 1083
LmnI GCTCC 3 cut(s) 488, 1163, 1622
Lsp1109I GCAGC 3 cut(s) 322, 712, 982
LweI GCATC 4 cut(s) 712, 982, 1102, 1488
MaeI CTAG 5 cut(s) 503, 810, 885, 1260, 1485
MaeIII GTNAC 5 cut(s) 8, 172, 388, 439, 1409
MalI GATC 5 cut(s) 381, 793, 889, 1024, 1085
MboI GATC 5 cut(s) 379, 791, 887, 1022, 1083
MfeI CAATTG 1 cut(s) 1015
MflI RGATCY 4 cut(s) 379, 791, 887, 1022
MhlI GDGCHC 3 cut(s) 231, 775, 1060
MlyI GAGTC 6 cut(s) 59, 168, 374, 1042, 1196, 1417
MmeI TCCRAC 1 cut(s) 1698
MroI TCCGGA 1 cut(s) 1637
MroXI GAANNNNTTC 1 cut(s) 1575
MseI TTAA 6 cut(s) 198, 351, 384, 680, 957, 1256
MspI CCGG 3 cut(s) 1326, 1511, 1638
MspR9I CCNGG 1 cut(s) 1511
MunI CAATTG 1 cut(s) 1015
MwoI GCNNNNNNNGC 2 cut(s) 427, 1554
NciI CCSGG 1 cut(s) 1511
NcoI CCATGG 2 cut(s) 339, 1079
NdeII GATC 5 cut(s) 379, 791, 887, 1022, 1083
NlaIV GGNNCC 6 cut(s) 627, 1278, 1447, 1448, 1508, 1624
NmeAIII GCCGAG 1 cut(s) 902
NmuCI GTSAC 5 cut(s) 8, 172, 388, 439, 1409
PaeR7I CTCGAG 1 cut(s) 1581
PagI TCATGA 2 cut(s) 262, 286
PdmI GAANNNNTTC 1 cut(s) 1575
PfeI GAWTC 5 cut(s) 65, 281, 357, 589, 758
PkrI GCNGC 5 cut(s) 88, 337, 630, 702, 972
PleI GAGTC 6 cut(s) 58, 167, 373, 1041, 1195, 1416
PpsI GAGTC 6 cut(s) 58, 167, 373, 1041, 1195, 1416
PpuMI RGGWCCY 2 cut(s) 1276, 1446
PshBI ATTAAT 1 cut(s) 957
Psp124BI GAGCTC 2 cut(s) 775, 1060
Psp5II RGGWCCY 2 cut(s) 1276, 1446
PspEI GGTNACC 1 cut(s) 8
PspN4I GGNNCC 6 cut(s) 627, 1278, 1447, 1448, 1508, 1624
PspPI GGNCC 4 cut(s) 1121, 1263, 1276, 1446
PspPPI RGGWCCY 2 cut(s) 1276, 1446
PsuI RGATCY 4 cut(s) 379, 791, 887, 1022
RsaI GTAC 5 cut(s) 805, 852, 1179, 1656, 1714
RsaNI GTAC 5 cut(s) 804, 851, 1178, 1655, 1713
SacI GAGCTC 2 cut(s) 775, 1060
SaqAI TTAA 6 cut(s) 198, 351, 384, 680, 957, 1256
SatI GCNGC 5 cut(s) 87, 336, 629, 701, 971
Sau3AI GATC 5 cut(s) 379, 791, 887, 1022, 1083
Sau96I GGNCC 4 cut(s) 1121, 1263, 1276, 1446
ScaI AGTACT 1 cut(s) 852
SchI GAGTC 6 cut(s) 59, 168, 374, 1042, 1196, 1417
ScrFI CCNGG 1 cut(s) 1511
SduI GDGCHC 3 cut(s) 231, 775, 1060
SfaNI GCATC 4 cut(s) 712, 982, 1102, 1488
Sfr274I CTCGAG 1 cut(s) 1581
SinI GGWCC 3 cut(s) 1121, 1276, 1446
SlaI CTCGAG 1 cut(s) 1581
SmlI CTYRAG 2 cut(s) 1581, 1707
SmoI CTYRAG 2 cut(s) 1581, 1707
SsiI CCGC 2 cut(s) 86, 629
SspI AATATT 2 cut(s) 583, 787
SspMI CTAG 5 cut(s) 503, 810, 885, 1260, 1485
SstI GAGCTC 2 cut(s) 775, 1060
StyD4I CCNGG 1 cut(s) 1509
StyI CCWWGG 5 cut(s) 339, 540, 899, 1079, 1285
TaaI ACNGT 2 cut(s) 1177, 1321
TaqI TCGA 7 cut(s) 745, 847, 1086, 1108, 1185, 1569, 1582
TatI WGTACW 1 cut(s) 850
TauI GCSGC 2 cut(s) 89, 631
TfiI GAWTC 5 cut(s) 65, 281, 357, 589, 758
Tru1I TTAA 6 cut(s) 198, 351, 384, 680, 957, 1256
Tru9I TTAA 6 cut(s) 198, 351, 384, 680, 957, 1256
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 5 cut(s) 8, 172, 388, 439, 1409
TseI GCWGC 3 cut(s) 335, 700, 970
Tsp45I GTSAC 5 cut(s) 8, 172, 388, 439, 1409
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 1 cut(s) 325
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 3 cut(s) 1121, 1276, 1446
VspI ATTAAT 1 cut(s) 957
XagI CCTNNNNNAGG 2 cut(s) 1041, 1745
XapI RAATTY 2 cut(s) 400, 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 1421
XhoI CTCGAG 1 cut(s) 1581
XmnI GAANNNNTTC 1 cut(s) 1575
XspI CTAG 5 cut(s) 503, 810, 885, 1260, 1485
ZrmI AGTACT 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.