RLG00000002543

protein At4g18490 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
36080985 .. 36084931
3947 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002543

Sequence Viewer

Length: 1881 bp
ATGAAACCTGGGGTTCTATTTTCAATTCTTGGTTTTAACTTCACGTTTCTGATTAGAACCATCCAAGGGGAAATCTTCCTCTGCCGATCAAAAGAAAAAAAGCTCATTTCAGATGAGGAAATTGGTGACGATTTCCTCAGCTCCTGGAAATCCATGTCAGTAATGAAAGATGACGGGATGGATTTCAGCCTTGATACAGGGGCCAAAAGCAAGAAGAAAGTGTTTGACTTTGATAAGCTGGATATGGATTTCAATCTAGATGGTGACTTCAACAAGATATCATCTTTCAAAATGGACATGTCTGATTTCGACTTCTCAAGCCCCCCTAAAAAAGATGCAAAAACCAAGGAAGAAGGATCCGAAGAAGAACCCTCCAGAGGAAGCCGTCAAGGGAAACAAGACACATTTAAATTCTCCTTTGACTTCAATGAGTTGGATAGTTTTGATCTCGATTCAACTTTGTCGAAACGAGAAAAGGGTTCTAAAAAGAACCAAGATAGCAGCAAAGAGGTTGTCTATGATGGAGCTCGGTGTGGAGGCTCTAAAGTTGATCTAGCTGAAGGGATTAGTACACTTGATGGTGAATCTGAGACAGTGGCCACATCAAAGATTAATACTTTGTTAGTTGATCCGGGGAATACTAATTCTATGAATGAACTTGCCTCAAAGTCTGAGACCTCTGGAAATTTTGAATTGCCTTCTGGTCCAAGATGTCAAGAAAATATAATGTCTAAAAGCAAAGAAGGGTCAAATCAACAAAGCCACTTACCTGAGAAGACAATGCCCATAGAACCACATGCTGAACAGACAATACATGATCTGCCTGCTGAACTTGTAGGAGGAGTTGATTTGAATGGGGATGCTGGTGTAGATGGAAAGAATGGTGGCTGTCCTCAGATCAAAAAAGTAAATATCATTTCAAGTGGAAAAGAAGCTGTTGATGACAAAATGATGATAGAAGATGGTCCTAATCATGAAGACTTCCCTTTTAAAAATTCATCTCCATTAGATATTGGTAGATTGGGGAGCAGTTATGGTGATAGGAGCATGTCAGACAGTGATACTTTGACAGAAAATGATGAACCAGCTAAAGGTGATTTAGATAATGGAGAGACTTTGGCTTCAGTGGTCTCCAGGAAGACACCACACAACATCAACAGTATCAAGGGAACCCAAAACTCAAGTTTAAAGCTTCCGTTGTCTACACAGGCCAGTGAATCTACAGTTGATAAAGTTACGCTGAGAAAGGAAAGCGGGGCTGGAGAACTCTGCTCGAAGATTTCTAAGAGATTGGAAAACACTGGACCTCAGTTGTATCAACCGCCATTAATAGGAGGAAAATCTCTCTCGTCTGGAAACAACAAAGTTGGTTCCATCACTTCCATGTATATAAGCCCTGCACTTGAGAAAGGGGTGGGTGCCAATGCTAATGCTGCACAATATGGAACCAAATTGCTCACTACCCTGGTGTTAGTTGATAAAGAAACAAAAGTCAAACCTGTAATACCTGGAAGGGAGGGCTCTGATTCTGACGGTGTACCAAACGAGACCAAACTAGTTGGGGATCCACAGCTGTGTGACAAAGAAGTAACAGAAAGGGAACCAGTAGTAGGAAGTGAGCAGAGAAAAAATCTTAAAGATCTCAGGGTTCAAGTGAGTTCTTCCAGCTCAACTGATAAGACAAGAAAACATAGTAGTCAAAGTGTCAAACCTAAGATCATGCTCCCAAGCGTGGAGCCAATAAGGAAATCAAAGATCATTACTGCTGAAGGGAATAAACATTGTCCTGACAAACCTGCACAGAAGAAAACCAACATCTCAACCTGGAAAATATCCAAGAATATTGGTGGCAATAAACCTTTTTTGAATGGTCCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

627

Amino Acids

67.93

Weight (kDa)

5.62

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1804
AccB1I GGYRCC 1 cut(s) 1418
AccI GTMKAC 1 cut(s) 1202
AciI CCGC 2 cut(s) 1254, 1322
AclWI GGATC 5 cut(s) 351, 364, 623, 1559, 1572
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 3 cut(s) 410, 685, 994
AcuI CTGAAG 3 cut(s) 579, 1107, 1788
AfaI GTAC 2 cut(s) 571, 1539
AfiI CCNNNNNNNGG 6 cut(s) 66, 377, 1091, 1331, 1610, 1732
AflIII ACRYGT 1 cut(s) 297
AhlI ACTAGT 1 cut(s) 1555
AjnI CCWGG 6 cut(s) 7, 143, 1133, 1464, 1507, 1823
AleI CACNNNNGTG 1 cut(s) 1573
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 5 cut(s) 584, 668, 1106, 1135, 1541
AlwI GGATC 5 cut(s) 351, 364, 623, 1559, 1572
AlwNI CAGNNNCTG 1 cut(s) 144
AoxI GGCC 3 cut(s) 201, 597, 1209
ApeKI GCWGC 2 cut(s) 501, 1433
ApoI RAATTY 3 cut(s) 410, 685, 994
ArsI GACNNNNNNTTYG 2 cut(s) 498, 530
AseI ATTAAT 2 cut(s) 612, 1328
AspS9I GGNCC 5 cut(s) 201, 704, 965, 1304, 1871
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 5 cut(s) 137, 275, 593, 1049, 1106
AvaII GGWCC 4 cut(s) 704, 965, 1304, 1871
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 2 cut(s) 356, 1564
BanI GGYRCC 1 cut(s) 1418
BanII GRGCYC 2 cut(s) 529, 1523
BbsI GAAGAC 3 cut(s) 782, 984, 1145
Bbv12I GWGCWC 1 cut(s) 529
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 513, 1420
BccI CCATC 8 cut(s) 68, 172, 254, 515, 572, 866, 956, 1382
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 6 cut(s) 9, 145, 1135, 1466, 1509, 1825
BcnI CCSGG 1 cut(s) 633
BcoDI GTCTC 5 cut(s) 584, 668, 1106, 1135, 1541
BcuI ACTAGT 1 cut(s) 1555
BfaI CTAG 3 cut(s) 257, 554, 1556
BfmI CTRYAG 1 cut(s) 1221
BfuAI ACCTGC 1 cut(s) 1804
BglII AGATCT 1 cut(s) 1639
BisI GCNGC 2 cut(s) 502, 1434
BlsI GCNGC 2 cut(s) 503, 1435
Bme1390I CCNGG 7 cut(s) 9, 145, 633, 1135, 1466, 1509, 1825
Bme18I GGWCC 4 cut(s) 704, 965, 1304, 1871
BmgT120I GGNCC 5 cut(s) 201, 704, 965, 1304, 1871
BmiI GGNNCC 9 cut(s) 202, 358, 1171, 1372, 1420, 1447, 1566, 1602, 1737
BmrFI CCNGG 7 cut(s) 9, 145, 633, 1135, 1466, 1509, 1825
BmsI GCATC 2 cut(s) 325, 850
BpiI GAAGAC 3 cut(s) 782, 984, 1145
BpmI CTGGAG 3 cut(s) 358, 1117, 1281
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 3 cut(s) 301, 1165, 1424
BpuMI CCSGG 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 3 cut(s) 668, 1135, 1541
BsaJI CCNNGG 5 cut(s) 8, 64, 345, 632, 1464
Bsc4I CCNNNNNNNGG 6 cut(s) 66, 377, 1091, 1331, 1610, 1732
Bse1I ACTGG 3 cut(s) 1212, 1306, 1604
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 6 cut(s) 9, 145, 1135, 1466, 1509, 1825
BseDI CCNNGG 5 cut(s) 8, 64, 345, 632, 1464
BseGI GGATG 3 cut(s) 60, 183, 865
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 6 cut(s) 66, 377, 1091, 1331, 1610, 1732
BseMII CTCAG 8 cut(s) 151, 579, 663, 762, 908, 1232, 1322, 1657
BseNI ACTGG 3 cut(s) 1212, 1306, 1604
BseRI GAGGAG 1 cut(s) 855
BseXI GCAGC 2 cut(s) 513, 1420
BsgI GTGCAG 3 cut(s) 1383, 1419, 1782
BshFI GGCC 3 cut(s) 203, 599, 1211
BshNI GGYRCC 1 cut(s) 1418
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 1 cut(s) 632
BslI CCNNNNNNNGG 6 cut(s) 66, 377, 1091, 1331, 1610, 1732
BsmAI GTCTC 5 cut(s) 584, 668, 1106, 1135, 1541
BsnI GGCC 3 cut(s) 203, 599, 1211
Bso31I GGTCTC 3 cut(s) 668, 1135, 1541
Bsp1286I GDGCHC 2 cut(s) 529, 1523
BspACI CCGC 2 cut(s) 1254, 1322
BspANI GGCC 3 cut(s) 203, 599, 1211
BspCNI CTCAG 8 cut(s) 150, 580, 664, 763, 907, 1233, 1321, 1656
BspHI TCATGA 1 cut(s) 973
BspLI GGNNCC 9 cut(s) 202, 358, 1171, 1372, 1420, 1447, 1566, 1602, 1737
BspMI ACCTGC 1 cut(s) 1804
BspPI GGATC 5 cut(s) 351, 364, 623, 1559, 1572
BspT107I GGYRCC 1 cut(s) 1418
BspTNI GGTCTC 3 cut(s) 668, 1135, 1541
BsrI ACTGG 3 cut(s) 1212, 1306, 1604
BssECI CCNNGG 5 cut(s) 8, 64, 345, 632, 1464
BssT1I CCWWGG 2 cut(s) 64, 345
Bst2UI CCWGG 6 cut(s) 9, 145, 1135, 1466, 1509, 1825
Bst4CI ACNGT 5 cut(s) 595, 1058, 1160, 1225, 1535
BstC8I GCNNGC 1 cut(s) 825
BstF5I GGATG 3 cut(s) 60, 183, 865
BstMAI GTCTC 5 cut(s) 584, 668, 1106, 1135, 1541
BstMWI GCNNNNNNNGC 1 cut(s) 1433
BstNI CCWGG 6 cut(s) 9, 145, 1135, 1466, 1509, 1825
BstNSI RCATGY 3 cut(s) 301, 800, 1051
BstSCI CCNGG 7 cut(s) 7, 143, 631, 1133, 1464, 1507, 1823
BstSFI CTRYAG 1 cut(s) 1221
BstV1I GCAGC 2 cut(s) 513, 1420
BstV2I GAAGAC 3 cut(s) 782, 984, 1145
BstX2I RGATCY 3 cut(s) 356, 1564, 1639
BstYI RGATCY 3 cut(s) 356, 1564, 1639
BsuRI GGCC 3 cut(s) 203, 599, 1211
BtsCI GGATG 3 cut(s) 60, 183, 865
BtsIMutI CAGTG 5 cut(s) 600, 1063, 1131, 1219, 1299
BveI ACCTGC 1 cut(s) 1804
Cac8I GCNNGC 1 cut(s) 825
CaiI CAGNNNCTG 1 cut(s) 144
CciI TCATGA 1 cut(s) 973
Cfr13I GGNCC 5 cut(s) 201, 704, 965, 1304, 1871
Csp6I GTAC 2 cut(s) 570, 1538
CviAII CATG 8 cut(s) 154, 298, 797, 815, 974, 1048, 1384, 1720
CviQI GTAC 2 cut(s) 570, 1538
DraI TTTAAA 3 cut(s) 409, 991, 1188
EaeI YGGCCR 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 2 cut(s) 64, 345
Eco24I GRGCYC 2 cut(s) 529, 1523
Eco31I GGTCTC 3 cut(s) 668, 1135, 1541
Eco32I GATATC 1 cut(s) 279
Eco47I GGWCC 4 cut(s) 704, 965, 1304, 1871
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 3 cut(s) 579, 1107, 1788
EcoICRI GAGCTC 1 cut(s) 527
EcoRII CCWGG 6 cut(s) 7, 143, 1133, 1464, 1507, 1823
EcoRV GATATC 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 64, 345
EcoT38I GRGCYC 2 cut(s) 529, 1523
ErhI CCWWGG 2 cut(s) 64, 345
FaeI CATG 8 cut(s) 157, 301, 800, 818, 977, 1051, 1387, 1723
FatI CATG 8 cut(s) 153, 297, 796, 814, 973, 1047, 1383, 1719
FauI CCCGC 1 cut(s) 1247
FblI GTMKAC 1 cut(s) 1202
Fnu4HI GCNGC 2 cut(s) 502, 1434
FokI GGATG 3 cut(s) 47, 190, 872
FriOI GRGCYC 2 cut(s) 529, 1523
Fsp4HI GCNGC 2 cut(s) 502, 1434
FspBI CTAG 3 cut(s) 257, 554, 1556
GluI GCNGC 2 cut(s) 502, 1434
GsuI CTGGAG 3 cut(s) 358, 1117, 1281
HaeIII GGCC 3 cut(s) 203, 599, 1211
HapII CCGG 1 cut(s) 632
Hin1II CATG 8 cut(s) 157, 301, 800, 818, 977, 1051, 1387, 1723
HindIII AAGCTT 1 cut(s) 1190
HinfI GANTC 4 cut(s) 452, 584, 1217, 1526
HpaII CCGG 1 cut(s) 632
HphI GGTGA 5 cut(s) 137, 275, 593, 1049, 1106
Hpy166II GTNNAC 4 cut(s) 572, 1203, 1538, 1874
Hpy188III TCNNGA 8 cut(s) 257, 375, 449, 681, 716, 974, 1353, 1787
Hpy8I GTNNAC 4 cut(s) 572, 1203, 1538, 1874
HpyAV CCTTC 6 cut(s) 347, 554, 708, 737, 1506, 1763
HpyCH4III ACNGT 5 cut(s) 595, 1058, 1160, 1225, 1535
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 338, 1400, 1436, 1799
HpyF10VI GCNNNNNNNGC 1 cut(s) 1433
HpySE526I ACGT 1 cut(s) 44
Hsp92II CATG 8 cut(s) 157, 301, 800, 818, 977, 1051, 1387, 1723
LmnI GCTCC 6 cut(s) 146, 524, 1026, 1044, 1728, 1735
Lsp1109I GCAGC 2 cut(s) 513, 1420
LweI GCATC 2 cut(s) 325, 850
MaeI CTAG 3 cut(s) 257, 554, 1556
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 5 cut(s) 125, 263, 1234, 1577, 1588
MflI RGATCY 3 cut(s) 356, 1564, 1639
MhlI GDGCHC 2 cut(s) 529, 1523
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 8 cut(s) 24, 120, 410, 643, 685, 692, 994, 1451
MluNI TGGCCA 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 414
Mox20I TGGCCA 1 cut(s) 599
MscI TGGCCA 1 cut(s) 599
MseI TTAA 8 cut(s) 36, 408, 612, 990, 1187, 1328, 1635, 1879
MslI CAYNNNNRTG 2 cut(s) 1382, 1573
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 1573
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 7 cut(s) 9, 145, 633, 1135, 1466, 1509, 1825
MvaI CCWGG 6 cut(s) 9, 145, 1135, 1466, 1509, 1825
MwoI GCNNNNNNNGC 1 cut(s) 1433
NciI CCSGG 1 cut(s) 633
NlaIII CATG 8 cut(s) 157, 301, 800, 818, 977, 1051, 1387, 1723
NlaIV GGNNCC 9 cut(s) 202, 358, 1171, 1372, 1420, 1447, 1566, 1602, 1737
NmuCI GTSAC 3 cut(s) 125, 263, 1577
NspI RCATGY 3 cut(s) 301, 800, 1051
OliI CACNNNNGTG 1 cut(s) 1573
PagI TCATGA 1 cut(s) 973
PciI ACATGT 1 cut(s) 297
PfeI GAWTC 4 cut(s) 452, 584, 1217, 1526
PfoI TCCNGGA 2 cut(s) 143, 1133
PkrI GCNGC 2 cut(s) 503, 1435
PscI ACATGT 1 cut(s) 297
PshBI ATTAAT 2 cut(s) 612, 1328
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 6 cut(s) 7, 143, 1133, 1464, 1507, 1823
PspGI CCWGG 6 cut(s) 7, 143, 1133, 1464, 1507, 1823
PspN4I GGNNCC 9 cut(s) 202, 358, 1171, 1372, 1420, 1447, 1566, 1602, 1737
PspPI GGNCC 5 cut(s) 201, 704, 965, 1304, 1871
PsrI GAACNNNNNNTAC 2 cut(s) 795, 827
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 3 cut(s) 356, 1564, 1639
PvuII CAGCTG 1 cut(s) 1573
RsaI GTAC 2 cut(s) 571, 1539
RsaNI GTAC 2 cut(s) 570, 1538
RseI CAYNNNNRTG 2 cut(s) 1382, 1573
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 8 cut(s) 36, 408, 612, 990, 1187, 1328, 1635, 1879
SatI GCNGC 2 cut(s) 502, 1434
Sau96I GGNCC 5 cut(s) 201, 704, 965, 1304, 1871
ScrFI CCNGG 7 cut(s) 9, 145, 633, 1135, 1466, 1509, 1825
SduI GDGCHC 2 cut(s) 529, 1523
SfaNI GCATC 2 cut(s) 325, 850
SfcI CTRYAG 1 cut(s) 1221
SinI GGWCC 4 cut(s) 704, 965, 1304, 1871
SmiI ATTTAAAT 1 cut(s) 409
SmiMI CAYNNNNRTG 2 cut(s) 1382, 1573
SmlI CTYRAG 3 cut(s) 316, 1180, 1403
SmoI CTYRAG 3 cut(s) 316, 1180, 1403
SpeI ACTAGT 1 cut(s) 1555
Sse9I AATT 8 cut(s) 24, 120, 410, 643, 685, 692, 994, 1451
SsiI CCGC 2 cut(s) 1254, 1322
SspI AATATT 1 cut(s) 1843
SspMI CTAG 3 cut(s) 257, 554, 1556
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 7 cut(s) 7, 143, 631, 1133, 1464, 1507, 1823
StyI CCWWGG 2 cut(s) 64, 345
SwaI ATTTAAAT 1 cut(s) 409
TaaI ACNGT 5 cut(s) 595, 1058, 1160, 1225, 1535
TaiI ACGT 1 cut(s) 47
TaqI TCGA 4 cut(s) 309, 450, 464, 1274
TasI AATT 8 cut(s) 24, 120, 410, 643, 685, 692, 994, 1451
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 4 cut(s) 452, 584, 1217, 1526
Tru1I TTAA 8 cut(s) 36, 408, 612, 990, 1187, 1328, 1635, 1879
Tru9I TTAA 8 cut(s) 36, 408, 612, 990, 1187, 1328, 1635, 1879
TscAI CASTG 5 cut(s) 600, 1063, 1131, 1219, 1306
TseFI GTSAC 3 cut(s) 125, 263, 1577
TseI GCWGC 2 cut(s) 501, 1433
Tsp45I GTSAC 3 cut(s) 125, 263, 1577
TspDTI ATGAA 7 cut(s) 17, 179, 665, 669, 987, 990, 1095
TspGWI ACGGA 1 cut(s) 1185
TspRI CASTG 5 cut(s) 600, 1063, 1131, 1219, 1306
VpaK11BI GGWCC 4 cut(s) 704, 965, 1304, 1871
VspI ATTAAT 2 cut(s) 612, 1328
XapI RAATTY 3 cut(s) 410, 685, 994
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 3 cut(s) 301, 800, 1051
XmiI GTMKAC 1 cut(s) 1202
XspI CTAG 3 cut(s) 257, 554, 1556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.