Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001455

Physical Location & Seq

Genomic Coordinates Reverse (-)

36079018 .. 36080888

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCACAAAACCTTTCCCTGAAACGAAAAGCATTTGAGGGATTAAATCCAGGTTTAGCATCCTTGAAGCCTCTAAAATGCCTCTCTCTGTCGCCAAGAGAAACCAGAAATTTCACAGAACCTTCAAAAGGAACTGTTGAACAGGTTTGCATTCGTGAGAACCATTTGGAGATCAAGACTAAGAGCCCAAGCTCTAGAGTTGGTAGAATGGTGAATGTGATGGAACTTGAACTTACTTCAGCAATGGAAACTGATGAAAATGTTGAAAAGGCTGAAGCATATACCAAGGAGCTTGAAGATATATGCAATATGCTGAAAAAGAAACATGAGGAAGCCAAAGAAATGCTTGTAAGAGCTGTTGTGAACAACAATAATCTACTGATGCTTAACCATCCCATCTATGAAGCCAAGATATCCTTTAAAAAAATGTCCTGCTACACTGGCATCCAAGGAACTTCAAGCATGTTGAAGAGGACCACCAGTGGGTCAGATAAAGGTACATATTATATCATGTTGCCTGCTTTGGTTGAGACAAAGCTGTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.57

Weight (kDa)

8.97

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490
fragaria_vesca	FvH4_5g25370 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040
malus_domestica	MD05G1304700.v1.1 MD05G1304800.v1.1 MD10G1283800.v1.1
prunus_persica	Prupe.4G057700_v2.0.a1 Prupe.4G057700_v2.0.a1
pyrus_communis	pycom05g28200 pycom05g28990 pycom10g23670
rosa_chinensis	RchiOBHm_Chr7g0215591 RchiOBHm_Chr7g0216741
rosa_laevigata	RLG00000002542 RLG00000002543 RLG00000002645
rosa_multiflora	Rmu_sc0000898.1_g000086 Rmu_sc0003814.1_g000007 Rmu_sc0007602.1_g000013 Rmu_sc0009814.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242970 Rroxscaffold_3G00244080
rosa_rugosa	Rorug06G0072200 Rorug07G0154800 Rorug07G0154900 Rorug07G0162000 Rorug07G0162100
rosa_samantha	Rh2BG169600 Rh2DG168600 Rh7AG291100 Rh7AG303000 Rh7BG283200 Rh7BG293700 Rh7CG311100 Rh7CG321700 Rh7DG294900 Rh7DG302600 Rh7DG302700 Rh7DG302800
rosa_wichuraiana	Rw6G016300 Rw7G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	2 cut(s)	222, 294
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	128, 483
AgsI	TTSAA	8 cut(s)	67, 126, 140, 230, 266, 296, 459, 469
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	4 cut(s)	192, 292, 356, 538
AluI	AGCT	4 cut(s)	192, 292, 356, 538
Alw26I	GTCTC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	188
BccI	CCATC	3 cut(s)	214, 399, 404
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	3 cut(s)	68, 372, 453
BsaJI	CCNNGG	2 cut(s)	285, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 483
Bse1I	ACTGG	2 cut(s)	445, 480
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	285, 448
BseGI	GGATG	3 cut(s)	59, 391, 444
BseLI	CCNNNNNNNGG	2 cut(s)	128, 483
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	445, 480
BslI	CCNNNNNNNGG	2 cut(s)	128, 483
BsmAI	GTCTC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	445, 480
BssECI	CCNNGG	2 cut(s)	285, 448
BssMI	GATC	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	285, 448
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	59, 391, 444
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	59, 391, 444
BtsIMutI	CAGTG	2 cut(s)	438, 487
Cac8I	GCNNGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	498
CviAII	CATG	3 cut(s)	326, 463, 511
CviJI	RGCY	9 cut(s)	70, 186, 192, 272, 292, 335, 356, 407, 538
CviKI_1	RGCY	9 cut(s)	70, 186, 192, 272, 292, 335, 356, 407, 538
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DraI	TTTAAA	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	285, 448
Eco24I	GRGCYC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	474
Eco57I	CTGAAG	2 cut(s)	222, 294
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	285, 448
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	2 cut(s)	285, 448
FaeI	CATG	3 cut(s)	329, 466, 514
FalI	AAGNNNNNCTT	5 cut(s)	330, 362, 401, 433, 527
FatI	CATG	3 cut(s)	325, 462, 510
FokI	GGATG	3 cut(s)	46, 378, 431
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	195
Hin1II	CATG	3 cut(s)	329, 466, 514
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	490, 548
Hpy188III	TCNNGA	3 cut(s)	155, 175, 195
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	150, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	329, 466, 514
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	9 cut(s)	32, 36, 63, 118, 128, 426, 445, 493, 531
LweI	GCATC	3 cut(s)	68, 372, 453
MaeI	CTAG	1 cut(s)	195
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	308, 481, 535
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	109
MnlI	CCTC	5 cut(s)	31, 81, 92, 322, 465
MseI	TTAA	3 cut(s)	44, 387, 420
MspR9I	CCNGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	441
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	3 cut(s)	329, 466, 514
NspI	RCATGY	1 cut(s)	466
PctI	GAATGC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	474
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	44, 387, 420
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	9 cut(s)	15, 55, 124, 147, 194, 294, 358, 499, 540
SfaNI	GCATC	3 cut(s)	68, 372, 453
SinI	GGWCC	1 cut(s)	474
Sse9I	AATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	2 cut(s)	285, 448
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	1 cut(s)	109
Tru1I	TTAA	3 cut(s)	44, 387, 420
Tru9I	TTAA	3 cut(s)	44, 387, 420
TscAI	CASTG	2 cut(s)	445, 487
TspDTI	ATGAA	2 cut(s)	270, 417
TspRI	CASTG	2 cut(s)	445, 487
VpaK11BI	GGWCC	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	1 cut(s)	466
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.