MD05G1304800.v1.1

protein At4g18490 isoform X1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
43741434 .. 43743647
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1304800.v1.1.491

Sequence Viewer

Length: 1503 bp
ATGGATTTCAATCTGGATGGTGACTTTGGCAAGATATCGTATTTCAAAATGGACATGCCAGACCTTGATTTCTCAAGCCCGCCCAGAAAAGCTGCAAAAACCAAGGAGAGATCTGAAGAAGAATCTTCCAAAGGAAACCGTCAGGGGAAACAAGACCCTTTAAATTCTCTTTTAATTTCAATTAGTAAGCTCTGTATTTTCTTTTCGTTTCCTTATTTGAATTACGTAAGCGATGTAAGTGTACTTGTACCTGACACTTTCTTTCTTGGAAGTGGGTTGGATGATTTTGATCTTGATCCAAGCTTAAAGAAAAGTGAAAGGAGTTCAAATAAGAATCAAGATAGCAGAAAAGAGGTTCTTTCTGATAGAAGAGGACCTCAAGGCTCTAAAATTGACCTGGCTGAAGATATTGGTACACTTGATGGTGGTTCTGAGAGAGTGGACCCTTCAAAGATTGATACTTCGTTAGTTGTTTTACGAAAGGTTAATTCTATCAATGATAATTGCCCATCAAAATCTAGATCAGAAAATCTGGAACCTCCACATGGTCCAAGGTCTCCAGTAAAAGTAATGACTAAGAGTGTTGAAGAATCAGATCAGCGAAGTCATTTATCTGAGAAGGAGTCGGCCACAGAACCATATGCTAAGCCGGCAACAGATGACTTGTCTGGTCAACTTGTAGGAGGAGTTGATTCAAATGGAGGTACCGTTTTTGAAGGAGAGAATGATGGTTGTCTTCAGACAGATTTTAATACCACTTCAAGTGGAAAAGAAGATATTGATGAGAAAATGTCAGCAGGAGACGGTCCTAATAGTGAAGACTTGCCCTTGAGGGATTCATCACCAGTAAACGTTGATAGTTCAGATAGCAAGAATGGTGATGGGTGTAAGTCAGGCAGTGATATATCTACACAAAACACTGAACCAAAGTTAGGCAGTGATATCTCGACTGAAAACACTGAATCAGCTATAGATGATTTAGATCTTGAAGACAATTCCAATACATTCGTCTCAAGGAAGACGCTGCTTAACATCAAAGGTATCAAGGACGACCAAAATTTGACTTCAAAGCTTCCTTTGTCTGCAGAGAGCAGTGAATCTGCAGTTGATAAAGTTACGCTGGCAAATGAAAGCAAAAGTGGAGAATTCCACTCAAAGATTTCTAAGAGATTGGAGGAAGTTGGATCTCAAATGTGTCAGCCATCATTAATAGGAGCAAAATCTCTCTCATCTGGTTTCAACGGGATTGATACCATGCGTCTACGTCCTGCAATTGAGGAAAGGGTGGTTACTAATGCTCATGGTGCACAAATTGGAAGTAAATTGCCTGATACTCCCCTGTTAGTTGATAAAGAAACAAAAGCCAAACATGACCTCAAGTCTGATGGTGTACCAAACAGGGCCAAACTGGTTCGCAATTCACGGCTGTCTGACAAAGAAGTAACAGAAAGGGAACCTGTCCTGGGAAGTGGACTGGGAAAAAGTCTTCATGATCCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

501

Amino Acids

54.17

Weight (kDa)

4.88

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 704
AccI GTMKAC 1 cut(s) 1261
AciI CCGC 1 cut(s) 80
AclI AACGTT 1 cut(s) 852
AclWI GGATC 3 cut(s) 290, 1192, 1487
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 3 cut(s) 163, 1057, 1145
AcuI CTGAAG 3 cut(s) 135, 423, 722
AfaI GTAC 5 cut(s) 243, 249, 415, 706, 1392
AfiI CCNNNNNNNGG 3 cut(s) 545, 932, 1463
AhdI GACNNNNNGTC 1 cut(s) 1378
AjnI CCWGG 2 cut(s) 396, 1461
AluBI AGCT 5 cut(s) 92, 190, 303, 968, 1072
AluI AGCT 5 cut(s) 92, 190, 303, 968, 1072
Alw21I GWGCWC 1 cut(s) 1309
Alw26I GTCTC 3 cut(s) 561, 795, 1015
Alw44I GTGCAC 1 cut(s) 1305
AlwI GGATC 3 cut(s) 290, 1192, 1487
AoxI GGCC 2 cut(s) 627, 1401
ApaLI GTGCAC 1 cut(s) 1305
ApeKI GCWGC 2 cut(s) 92, 1024
ApoI RAATTY 3 cut(s) 163, 1057, 1145
AseI ATTAAT 1 cut(s) 1208
Asp718I GGTACC 1 cut(s) 704
AspS9I GGNCC 5 cut(s) 374, 442, 548, 806, 1401
AsuHPI GGTGA 3 cut(s) 32, 834, 890
AvaII GGWCC 4 cut(s) 374, 442, 548, 806
BaeGI GKGCMC 1 cut(s) 1309
BanI GGYRCC 1 cut(s) 704
BbsI GAAGAC 5 cut(s) 728, 825, 996, 1025, 1478
Bbv12I GWGCWC 1 cut(s) 1309
BbvI GCAGC 2 cut(s) 79, 1011
BccI CCATC 7 cut(s) 11, 416, 517, 722, 875, 1210, 1379
BceAI ACGGC 1 cut(s) 1439
BciT130I CCWGG 2 cut(s) 398, 1463
BcoDI GTCTC 3 cut(s) 561, 795, 1015
BfaI CTAG 1 cut(s) 519
BfmI CTRYAG 3 cut(s) 969, 1083, 1101
BglII AGATCT 2 cut(s) 110, 982
BisI GCNGC 2 cut(s) 93, 1025
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 2 cut(s) 94, 1026
Bme1390I CCNGG 2 cut(s) 398, 1463
Bme18I GGWCC 4 cut(s) 374, 442, 548, 806
BmeRI GACNNNNNGTC 1 cut(s) 1378
BmgT120I GGNCC 5 cut(s) 374, 442, 548, 806, 1401
BmiI GGNNCC 4 cut(s) 444, 537, 706, 1455
BmrFI CCNGG 2 cut(s) 398, 1463
BmrI ACTGGG 1 cut(s) 1484
BmuI ACTGGG 1 cut(s) 1484
BpiI GAAGAC 5 cut(s) 728, 825, 996, 1025, 1478
BpmI CTGGAG 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 645
BpuEI CTTGAG 5 cut(s) 58, 363, 850, 997, 1361
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 4 cut(s) 9, 288, 294, 981
BsaI GGTCTC 1 cut(s) 561
BsaJI CCNNGG 4 cut(s) 102, 551, 1462, 1496
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 3 cut(s) 545, 932, 1463
Bse118I RCCGGY 1 cut(s) 649
Bse1I ACTGG 4 cut(s) 560, 845, 1413, 1479
Bse8I GATNNNNATC 4 cut(s) 9, 288, 294, 981
BseBI CCWGG 2 cut(s) 398, 1463
BseDI CCNNGG 4 cut(s) 102, 551, 1462, 1496
BseGI GGATG 2 cut(s) 22, 286
BseJI GATNNNNATC 4 cut(s) 9, 288, 294, 981
BseLI CCNNNNNNNGG 3 cut(s) 545, 932, 1463
BseMII CTCAG 2 cut(s) 423, 606
BseNI ACTGG 4 cut(s) 560, 845, 1413, 1479
BseRI GAGGAG 1 cut(s) 699
BseSI GKGCMC 1 cut(s) 1309
BseXI GCAGC 2 cut(s) 79, 1011
BshFI GGCC 2 cut(s) 629, 1403
BshNI GGYRCC 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 1309
BsiSI CCGG 1 cut(s) 650
BslI CCNNNNNNNGG 3 cut(s) 545, 932, 1463
BsmAI GTCTC 3 cut(s) 561, 795, 1015
BsmBI CGTCTC 2 cut(s) 795, 1015
BsnI GGCC 2 cut(s) 629, 1403
Bso31I GGTCTC 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 1309
Bsp143I GATC 8 cut(s) 110, 289, 295, 521, 595, 982, 1184, 1492
Bsp1720I GCTNAGC 1 cut(s) 645
BspACI CCGC 1 cut(s) 80
BspANI GGCC 2 cut(s) 629, 1403
BspCNI CTCAG 2 cut(s) 424, 607
BspHI TCATGA 1 cut(s) 1489
BspLI GGNNCC 4 cut(s) 444, 537, 706, 1455
BspMAI CTGCAG 2 cut(s) 1087, 1105
BspPI GGATC 3 cut(s) 290, 1192, 1487
BspT107I GGYRCC 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 561
BsrFI RCCGGY 1 cut(s) 649
BsrI ACTGG 4 cut(s) 560, 845, 1413, 1479
BssAI RCCGGY 1 cut(s) 649
BssECI CCNNGG 4 cut(s) 102, 551, 1462, 1496
BssMI GATC 8 cut(s) 110, 289, 295, 521, 595, 982, 1184, 1492
BssT1I CCWWGG 3 cut(s) 102, 551, 1496
Bst2UI CCWGG 2 cut(s) 398, 1463
Bst4CI ACNGT 3 cut(s) 140, 709, 806
Bst6I CTCTTC 1 cut(s) 364
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 80, 651, 1122
BstDEI CTNAG 5 cut(s) 432, 576, 615, 645, 1164
BstF5I GGATG 2 cut(s) 22, 286
BstKTI GATC 8 cut(s) 113, 292, 298, 524, 598, 985, 1187, 1495
BstMAI GTCTC 3 cut(s) 561, 795, 1015
BstMBI GATC 8 cut(s) 110, 289, 295, 521, 595, 982, 1184, 1492
BstMWI GCNNNNNNNGC 2 cut(s) 650, 1304
BstNI CCWGG 2 cut(s) 398, 1463
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 396, 1461
BstSFI CTRYAG 3 cut(s) 969, 1083, 1101
BstSLI GKGCMC 1 cut(s) 1309
BstSNI TACGTA 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 79, 1011
BstV2I GAAGAC 5 cut(s) 728, 825, 996, 1025, 1478
BstX2I RGATCY 3 cut(s) 110, 982, 1184
BstYI RGATCY 3 cut(s) 110, 982, 1184
BsuRI GGCC 2 cut(s) 629, 1403
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 22, 286
BtsI GCAGTG 3 cut(s) 904, 943, 1099
BtsIMutI CAGTG 5 cut(s) 904, 918, 943, 957, 1099
Cac8I GCNNGC 3 cut(s) 80, 651, 1122
CciI TCATGA 1 cut(s) 1489
Cfr10I RCCGGY 1 cut(s) 649
Cfr13I GGNCC 5 cut(s) 374, 442, 548, 806, 1401
CseI GACGC 2 cut(s) 1030, 1247
Csp6I GTAC 5 cut(s) 242, 248, 414, 705, 1391
CviAII CATG 6 cut(s) 55, 545, 1255, 1301, 1370, 1490
CviQI GTAC 5 cut(s) 242, 248, 414, 705, 1391
DdeI CTNAG 5 cut(s) 432, 576, 615, 645, 1164
DpnI GATC 8 cut(s) 112, 291, 297, 523, 597, 984, 1186, 1494
DpnII GATC 8 cut(s) 110, 289, 295, 521, 595, 982, 1184, 1492
DraI TTTAAA 1 cut(s) 162
DriI GACNNNNNGTC 1 cut(s) 1378
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 1 cut(s) 364
Eam1105I GACNNNNNGTC 1 cut(s) 1378
EarI CTCTTC 1 cut(s) 364
Eco105I TACGTA 1 cut(s) 226
Eco130I CCWWGG 3 cut(s) 102, 551, 1496
Eco31I GGTCTC 1 cut(s) 561
Eco32I GATATC 2 cut(s) 36, 943
Eco47I GGWCC 4 cut(s) 374, 442, 548, 806
Eco57I CTGAAG 3 cut(s) 135, 423, 722
EcoO109I RGGNCCY 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 1145
EcoRII CCWGG 2 cut(s) 396, 1461
EcoRV GATATC 2 cut(s) 36, 943
EcoT14I CCWWGG 3 cut(s) 102, 551, 1496
ErhI CCWWGG 3 cut(s) 102, 551, 1496
Esp3I CGTCTC 2 cut(s) 795, 1015
FaeI CATG 6 cut(s) 58, 548, 1258, 1304, 1373, 1493
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 6 cut(s) 54, 544, 1254, 1300, 1369, 1489
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 640
FblI GTMKAC 1 cut(s) 1261
Fnu4HI GCNGC 2 cut(s) 93, 1025
FokI GGATG 2 cut(s) 29, 293
Fsp4HI GCNGC 2 cut(s) 93, 1025
FspBI CTAG 1 cut(s) 519
GluI GCNGC 2 cut(s) 93, 1025
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 629, 1403
HapII CCGG 1 cut(s) 650
HgaI GACGC 2 cut(s) 1030, 1247
Hin1II CATG 6 cut(s) 58, 548, 1258, 1304, 1373, 1493
HincII GTYRAC 1 cut(s) 674
HindII GTYRAC 1 cut(s) 674
HindIII AAGCTT 2 cut(s) 301, 1070
HinfI GANTC 8 cut(s) 122, 334, 590, 623, 692, 836, 962, 1097
HpaII CCGG 1 cut(s) 650
HphI GGTGA 3 cut(s) 32, 834, 890
Hpy166II GTNNAC 9 cut(s) 242, 416, 442, 674, 850, 1262, 1307, 1391, 1472
Hpy188III TCNNGA 8 cut(s) 14, 293, 338, 519, 533, 946, 986, 1490
Hpy8I GTNNAC 9 cut(s) 242, 416, 442, 674, 850, 1262, 1307, 1391, 1472
HpyAV CCTTC 3 cut(s) 456, 613, 710
HpyCH4III ACNGT 3 cut(s) 140, 709, 806
HpyCH4IV ACGT 3 cut(s) 225, 852, 1264
HpyCH4V TGCA 5 cut(s) 95, 1085, 1103, 1271, 1307
HpyF10VI GCNNNNNNNGC 2 cut(s) 650, 1304
HpyF3I CTNAG 5 cut(s) 432, 576, 615, 645, 1164
HpySE526I ACGT 3 cut(s) 225, 852, 1264
Hsp92II CATG 6 cut(s) 58, 548, 1258, 1304, 1373, 1493
KpnI GGTACC 1 cut(s) 708
KroI GCCGGC 1 cut(s) 649
KroNI GCCGGC 1 cut(s) 651
Kzo9I GATC 8 cut(s) 110, 289, 295, 521, 595, 982, 1184, 1492
LmnI GCTCC 1 cut(s) 1214
Lsp1109I GCAGC 2 cut(s) 79, 1011
MaeI CTAG 1 cut(s) 519
MaeII ACGT 3 cut(s) 225, 852, 1264
MaeIII GTNAC 4 cut(s) 20, 1114, 1288, 1441
MalI GATC 8 cut(s) 112, 291, 297, 523, 597, 984, 1186, 1494
MboI GATC 8 cut(s) 110, 289, 295, 521, 595, 982, 1184, 1492
MfeI CAATTG 1 cut(s) 1272
MflI RGATCY 3 cut(s) 110, 982, 1184
MhlI GDGCHC 1 cut(s) 1309
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 2 cut(s) 258, 1162
MroNI GCCGGC 1 cut(s) 649
MseI TTAA 7 cut(s) 161, 173, 305, 486, 750, 1029, 1208
MspI CCGG 1 cut(s) 650
MspR9I CCNGG 2 cut(s) 398, 1463
MunI CAATTG 1 cut(s) 1272
MvaI CCWGG 2 cut(s) 398, 1463
MwoI GCNNNNNNNGC 2 cut(s) 650, 1304
NaeI GCCGGC 1 cut(s) 651
NdeI CATATG 1 cut(s) 640
NdeII GATC 8 cut(s) 110, 289, 295, 521, 595, 982, 1184, 1492
NgoMIV GCCGGC 1 cut(s) 649
NlaIII CATG 6 cut(s) 58, 548, 1258, 1304, 1373, 1493
NlaIV GGNNCC 4 cut(s) 444, 537, 706, 1455
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 58
PagI TCATGA 1 cut(s) 1489
PdiI GCCGGC 1 cut(s) 651
PfeI GAWTC 7 cut(s) 122, 334, 590, 692, 836, 962, 1097
PkrI GCNGC 2 cut(s) 94, 1026
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 374
PshBI ATTAAT 1 cut(s) 1208
Psp1406I AACGTT 1 cut(s) 852
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 396, 1461
PspGI CCWGG 2 cut(s) 396, 1461
PspN4I GGNNCC 4 cut(s) 444, 537, 706, 1455
PspPI GGNCC 5 cut(s) 374, 442, 548, 806, 1401
PspPPI RGGWCCY 1 cut(s) 374
PstI CTGCAG 2 cut(s) 1087, 1105
PsuI RGATCY 3 cut(s) 110, 982, 1184
RsaI GTAC 5 cut(s) 243, 249, 415, 706, 1392
RsaNI GTAC 5 cut(s) 242, 248, 414, 705, 1391
SaqAI TTAA 7 cut(s) 161, 173, 305, 486, 750, 1029, 1208
SatI GCNGC 2 cut(s) 93, 1025
Sau3AI GATC 8 cut(s) 110, 289, 295, 521, 595, 982, 1184, 1492
Sau96I GGNCC 5 cut(s) 374, 442, 548, 806, 1401
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 2 cut(s) 398, 1463
SduI GDGCHC 1 cut(s) 1309
SfcI CTRYAG 3 cut(s) 969, 1083, 1101
SinI GGWCC 4 cut(s) 374, 442, 548, 806
SmlI CTYRAG 5 cut(s) 73, 378, 829, 1012, 1376
SmoI CTYRAG 5 cut(s) 73, 378, 829, 1012, 1376
SnaBI TACGTA 1 cut(s) 226
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 396, 1461
StyI CCWWGG 3 cut(s) 102, 551, 1496
TaaI ACNGT 3 cut(s) 140, 709, 806
TaiI ACGT 3 cut(s) 228, 855, 1267
TaqI TCGA 1 cut(s) 947
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 7 cut(s) 122, 334, 590, 692, 836, 962, 1097
Tru1I TTAA 7 cut(s) 161, 173, 305, 486, 750, 1029, 1208
Tru9I TTAA 7 cut(s) 161, 173, 305, 486, 750, 1029, 1208
TscAI CASTG 5 cut(s) 904, 925, 943, 964, 1099
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 92, 1024
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 828, 1143, 1478
TspRI CASTG 5 cut(s) 904, 925, 943, 964, 1099
VneI GTGCAC 1 cut(s) 1305
VpaK11BI GGWCC 4 cut(s) 374, 442, 548, 806
VspI ATTAAT 1 cut(s) 1208
XapI RAATTY 3 cut(s) 163, 1057, 1145
XbaI TCTAGA 1 cut(s) 518
XceI RCATGY 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 1261
XspI CTAG 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.