Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003814.1

Orthogroup ID

OG0001455

Physical Location & Seq

Genomic Coordinates Reverse (-)

18730 .. 20989

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003814.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggaaagcagggctggagaactctgctcgaagatttctaagagattggaaaacactggacctcagttgtatcaaccgccattaataggaggaaaatctctctcgtctggaaacaacaaagttggttccatggtgggtgtcaatgctaatgctgcacaatatggaaccaaattgctcactaccccggtgttagttgataaagaaacaaaagtcagatctgtaatacctggaagggttcaagtgagttcttccagctcaactgataagacaagaaaacatagtagtcaaagtgtcaaacctaagatcatgctcccaagcgtggagccaataaggaaatcaaagatcattactgctgaagggaataaacattgtcctgacaaacctgcacagaagaaaaccgacatctcaacctggaaaatatccaagaatattggtggcaataaaccttttttgaatgctccacctcaaaaagaagttaaaacccagaggagttcagaacaaaacaaggagctgcatcgcaatgtggaattgaaaactaggcagattgttgatggcagtgaaaaaatgccacaaaacttttccctgaaacaaaaagcatttgaggtttgcattcgtgagaaccatttggagatcaagactaagagcccaagctctagagttggtagaatggtgaatgtgatggaacttgaatttacttcagcaatggagactgatgaaaatgttgaaaaggctgaaacatatatcaaggtgcttgaagatgtgggtaaactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.47

Weight (kDa)

9.74

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490 AT4G18490
fragaria_vesca	FvH4_5g25370 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040 FvH4_5g26040
malus_domestica	MD05G1304700.v1.1 MD05G1304800.v1.1 MD10G1283800.v1.1
prunus_persica	Prupe.4G057700_v2.0.a1 Prupe.4G057700_v2.0.a1
pyrus_communis	pycom05g28200 pycom05g28990 pycom10g23670
rosa_chinensis	RchiOBHm_Chr7g0215591 RchiOBHm_Chr7g0216741
rosa_laevigata	RLG00000002542 RLG00000002543 RLG00000002645
rosa_multiflora	Rmu_sc0000898.1_g000086 Rmu_sc0003814.1_g000007 Rmu_sc0007602.1_g000013 Rmu_sc0009814.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242970 Rroxscaffold_3G00244080
rosa_rugosa	Rorug06G0072200 Rorug07G0154800 Rorug07G0154900 Rorug07G0162000 Rorug07G0162100
rosa_samantha	Rh2BG169600 Rh2DG168600 Rh7AG291100 Rh7AG303000 Rh7BG283200 Rh7BG293700 Rh7CG311100 Rh7CG321700 Rh7DG294900 Rh7DG302600 Rh7DG302700 Rh7DG302800
rosa_wichuraiana	Rw6G016300 Rw7G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	391
AciI	CCGC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	2 cut(s)	375, 681
AfiI	CCNNNNNNNGG	2 cut(s)	86, 319
AgsI	TTSAA	6 cut(s)	239, 454, 532, 689, 725, 755
AjnI	CCWGG	2 cut(s)	226, 410
AluBI	AGCT	3 cut(s)	255, 511, 651
AluI	AGCT	3 cut(s)	255, 511, 651
Alw26I	GTCTC	1 cut(s)	701
ApeKI	GCWGC	2 cut(s)	152, 511
ApoI	RAATTY	1 cut(s)	689
AseI	ATTAAT	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	647
BbvI	GCAGC	2 cut(s)	139, 498
BccI	CCATC	2 cut(s)	545, 673
BciT130I	CCWGG	2 cut(s)	228, 412
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	2 cut(s)	537, 654
BfuAI	ACCTGC	1 cut(s)	391
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	153, 512
BlsI	GCNGC	2 cut(s)	154, 513
Bme1390I	CCNGG	3 cut(s)	185, 228, 412
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	3 cut(s)	127, 166, 324
BmrFI	CCNGG	3 cut(s)	185, 228, 412
BmsI	GCATC	1 cut(s)	523
BpmI	CTGGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	129, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 319
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	526, 708
BseBI	CCWGG	2 cut(s)	228, 412
BseDI	CCNNGG	2 cut(s)	129, 183
BseLI	CCNNNNNNNGG	2 cut(s)	86, 319
BseMI	GCAATG	2 cut(s)	526, 708
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	139, 498
BsgI	GTGCAG	2 cut(s)	138, 369
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	86, 319
BsmAI	GTCTC	1 cut(s)	701
BsmI	GAATGC	2 cut(s)	460, 609
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	4 cut(s)	215, 303, 342, 630
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	127, 166, 324
BspMI	ACCTGC	1 cut(s)	391
BsrDI	GCAATG	2 cut(s)	526, 708
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	129, 183
BssMI	GATC	4 cut(s)	215, 303, 342, 630
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	228, 412
BstDEI	CTNAG	4 cut(s)	39, 63, 300, 639
BstDSI	CCRYGG	1 cut(s)	129
BstKTI	GATC	4 cut(s)	218, 306, 345, 633
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	4 cut(s)	215, 303, 342, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	228, 412
BstSCI	CCNGG	3 cut(s)	183, 226, 410
BstV1I	GCAGC	2 cut(s)	139, 498
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	500
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	54, 562
BveI	ACCTGC	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	59
CviAII	CATG	2 cut(s)	130, 307
CviJI	RGCY	7 cut(s)	14, 255, 325, 511, 645, 651, 731
CviKI_1	RGCY	7 cut(s)	14, 255, 325, 511, 645, 651, 731
DdeI	CTNAG	4 cut(s)	39, 63, 300, 639
DpnI	GATC	4 cut(s)	217, 305, 344, 632
DpnII	GATC	4 cut(s)	215, 303, 342, 630
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	2 cut(s)	375, 681
EcoRII	CCWGG	2 cut(s)	226, 410
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	133, 310
FaiI	YATR	7 cut(s)	131, 162, 279, 308, 739, 741, 772
FatI	CATG	2 cut(s)	129, 306
Fnu4HI	GCNGC	2 cut(s)	153, 512
FriOI	GRGCYC	1 cut(s)	647
Fsp4HI	GCNGC	2 cut(s)	153, 512
FspBI	CTAG	2 cut(s)	537, 654
GluI	GCNGC	2 cut(s)	153, 512
GsuI	CTGGAG	1 cut(s)	36
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	2 cut(s)	133, 310
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	1 cut(s)	767
Hpy188I	TCNGA	2 cut(s)	215, 496
Hpy188III	TCNNGA	5 cut(s)	108, 374, 614, 634, 654
Hpy8I	GTNNAC	1 cut(s)	767
HpyAV	CCTTC	2 cut(s)	225, 350
HpyCH4V	TGCA	4 cut(s)	155, 386, 514, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	4 cut(s)	39, 63, 300, 639
Hsp92II	CATG	2 cut(s)	133, 310
Kzo9I	GATC	4 cut(s)	215, 303, 342, 630
LmnI	GCTCC	4 cut(s)	315, 322, 463, 508
Lsp1109I	GCAGC	2 cut(s)	139, 498
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	2 cut(s)	537, 654
MalI	GATC	4 cut(s)	217, 305, 344, 632
MboI	GATC	4 cut(s)	215, 303, 342, 630
MboII	GAAGA	4 cut(s)	43, 240, 403, 767
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	3 cut(s)	170, 527, 689
MnlI	CCTC	5 cut(s)	72, 83, 474, 480, 595
MseI	TTAA	2 cut(s)	83, 477
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	185, 228, 412
Mva1269I	GAATGC	2 cut(s)	460, 609
MvaI	CCWGG	2 cut(s)	228, 412
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	215, 303, 342, 630
NlaIII	CATG	2 cut(s)	133, 310
NlaIV	GGNNCC	3 cut(s)	127, 166, 324
PctI	GAATGC	2 cut(s)	460, 609
PkrI	GCNGC	2 cut(s)	154, 513
PshBI	ATTAAT	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	226, 410
PspGI	CCWGG	2 cut(s)	226, 410
PspN4I	GGNNCC	3 cut(s)	127, 166, 324
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	83, 477
SatI	GCNGC	2 cut(s)	153, 512
Sau3AI	GATC	4 cut(s)	215, 303, 342, 630
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	3 cut(s)	185, 228, 412
SduI	GDGCHC	1 cut(s)	647
SfaNI	GCATC	1 cut(s)	523
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	519
Sse9I	AATT	3 cut(s)	170, 527, 689
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	2 cut(s)	537, 654
StyD4I	CCNGG	3 cut(s)	183, 226, 410
StyI	CCWWGG	1 cut(s)	129
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	170, 527, 689
Tru1I	TTAA	2 cut(s)	83, 477
Tru9I	TTAA	2 cut(s)	83, 477
TscAI	CASTG	2 cut(s)	61, 562
TseI	GCWGC	2 cut(s)	152, 511
TspDTI	ATGAA	1 cut(s)	729
TspRI	CASTG	2 cut(s)	61, 562
VpaK11BI	GGWCC	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	1 cut(s)	689
XbaI	TCTAGA	1 cut(s)	653
XspI	CTAG	2 cut(s)	537, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.