Rorug07G0154800

protein At4g18490 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001455
Physical Location & Seq
Reverse (-)
12236367 .. 12237438
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0154800.1

Sequence Viewer

Length: 636 bp
ATGGCTGAGAAGACCCACCAAGCTTATCCTACAGCCCAAGCAAATGGTTACACAAGAAGCGATGGAGAATCTTTGGTATCTGAAGATGAACTCAAGCGCAAGAAGAGAATCAAATTGTTTACCTACATTGGTATCTTCATTGTGTTTCAGATCATAGTGATGACCGTATTTGGTCTCACCGTGATGAAAGTCAAGACCCCCAAGGCCAGGTTGGGCGAAATCAGTGTCCAAAGCCTCACATATGTCCCTGCAACACCTTCATTCGACACAAAGTTCACAACCCAGATAAGGATCAAGAACACAAACTGGGGTCCTTACAAATTTGATGCAGGAACTGCCACGTTCCTGTACCAAGGCACTACTATTGGGAAAATTGATATTCCCAAGAGTAAGGCTGGCATGCGTTCTACTAAGAAGATCAATGTCGAGGTGAGTTTGAATGCTGATGCTTTGCCAAGCAGTTCCAAACTTGGAAGTGAATTGAGCAGCGGGGTGTTGACACTGACGAGCCAAGTTCAATTGAAAGGCAAAGTCGAATTGATGCTCATAATGAAGAAAAACAAGAATGCTTCAATGGACTGCACCATAGCCTTCGATTTGTCATCAAAGACGGTCAAGAGCTTAGAATGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.25

Weight (kDa)

9.76

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 96 - 195 9.6e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 489
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 207, 288
AgsI TTSAA 4 cut(s) 439, 518, 523, 573
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 2 cut(s) 23, 621
AluI AGCT 2 cut(s) 23, 621
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 169, 442
AvaII GGWCC 1 cut(s) 311
BaeI ACNNNNGTAYC 2 cut(s) 115, 148
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 498
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 487
BlsI GCNGC 1 cut(s) 488
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 3 cut(s) 316, 436, 531
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 201, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 288
Bse1I ACTGG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 290
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 201, 352
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 2 cut(s) 207, 288
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 498
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 1 cut(s) 206
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 207, 288
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 3 cut(s) 445, 571, 632
BsnI GGCC 1 cut(s) 206
Bso31I GGTCTC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 150, 291, 417
BspACI CCGC 1 cut(s) 489
BspANI GGCC 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 201, 352
BssMI GATC 3 cut(s) 150, 291, 417
BssT1I CCWWGG 2 cut(s) 201, 352
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 3 cut(s) 166, 181, 613
Bst6I CTCTTC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 397, 401
BstDEI CTNAG 3 cut(s) 6, 411, 622
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 3 cut(s) 153, 294, 420
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 3 cut(s) 150, 291, 417
BstMWI GCNNNNNNNGC 2 cut(s) 335, 627
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 498
BstV2I GAAGAC 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 44
BsuRI GGCC 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 229, 500
Cac8I GCNNGC 2 cut(s) 397, 401
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 400
CviJI RGCY 9 cut(s) 5, 23, 35, 206, 234, 395, 510, 590, 621
CviKI_1 RGCY 9 cut(s) 5, 23, 35, 206, 234, 395, 510, 590, 621
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 6, 411, 622
DpnI GATC 3 cut(s) 152, 293, 419
DpnII GATC 3 cut(s) 150, 291, 417
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 201, 352
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 201, 352
ErhI CCWWGG 2 cut(s) 201, 352
FaeI CATG 1 cut(s) 403
FaiI YATR 6 cut(s) 155, 241, 243, 401, 548, 587
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 399
FauI CCCGC 1 cut(s) 482
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 487
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 487
HaeIII GGCC 1 cut(s) 206
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 403
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 68, 108
HphI GGTGA 2 cut(s) 169, 442
Hpy166II GTNNAC 3 cut(s) 120, 276, 498
Hpy188I TCNGA 2 cut(s) 82, 150
Hpy188III TCNNGA 3 cut(s) 193, 295, 616
Hpy8I GTNNAC 3 cut(s) 120, 276, 498
HpyAV CCTTC 2 cut(s) 267, 601
HpyCH4III ACNGT 3 cut(s) 166, 181, 613
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 251, 329, 582, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 627
HpyF3I CTNAG 3 cut(s) 6, 411, 622
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 1 cut(s) 403
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 150, 291, 417
LpnPI CCDG 8 cut(s) 193, 220, 261, 292, 296, 315, 359, 381
Lsp1109I GCAGC 1 cut(s) 498
LweI GCATC 3 cut(s) 316, 436, 531
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 152, 293, 419
MboI GATC 3 cut(s) 150, 291, 417
MboII GAAGA 6 cut(s) 22, 95, 115, 127, 427, 565
MfeI CAATTG 1 cut(s) 518
MluCI AATT 6 cut(s) 113, 320, 372, 479, 518, 536
MnlI CCTC 2 cut(s) 245, 421
MslI CAYNNNNRTG 2 cut(s) 158, 182
MspA1I CMGCKG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 3 cut(s) 445, 571, 632
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 335, 627
NdeI CATATG 1 cut(s) 241
NdeII GATC 3 cut(s) 150, 291, 417
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 1 cut(s) 312
NspI RCATGY 1 cut(s) 403
PaeI GCATGC 1 cut(s) 403
PctI GAATGC 3 cut(s) 445, 571, 632
PfeI GAWTC 2 cut(s) 68, 108
PkrI GCNGC 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 311
PspPPI RGGWCCY 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 158, 182
SatI GCNGC 1 cut(s) 487
Sau3AI GATC 3 cut(s) 150, 291, 417
Sau96I GGNCC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 208
SetI ASST 7 cut(s) 25, 125, 212, 259, 344, 432, 623
SfaNI GCATC 3 cut(s) 316, 436, 531
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 2 cut(s) 158, 182
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SphI GCATGC 1 cut(s) 403
Sse9I AATT 6 cut(s) 113, 320, 372, 479, 518, 536
SsiI CCGC 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 201, 352
TaaI ACNGT 3 cut(s) 166, 181, 613
TaiI ACGT 1 cut(s) 344
TaqI TCGA 4 cut(s) 264, 426, 534, 594
TasI AATT 6 cut(s) 113, 320, 372, 479, 518, 536
TfiI GAWTC 2 cut(s) 68, 108
TscAI CASTG 2 cut(s) 229, 507
TseI GCWGC 1 cut(s) 486
TspDTI ATGAA 5 cut(s) 102, 127, 200, 249, 566
TspRI CASTG 2 cut(s) 229, 507
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.