RchiOBHm_Chr7g0216741

protein At4g18490 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
34370305 .. 34378088
7784 bp
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UTR
Exon/CDS
Intron
PRQ19394

Sequence Viewer

Length: 2418 bp
ATGGCAGAACCATCCAAGGTGAAATCTTCCTCTGCCGATCAAAATAAAAAAAGCTCATTTCTAGATGAGGAAAATGGTGACGATTTCCTCAGCTCCTGGAAATCCATGTCAGTAATGAAAGATGACGGGATGGATTTCAGCCTTGATACAGGGGCCAAAAGCAAGAAGAAAGTGTTTGACTTTGATAAGCTGGATATGGATTTCAATCTAGATGGTGACTTCAACAAGATATCATCTTTCAAAATGGACATGTCTGATTTCGACTTCTCAAGCCCCCCCAAAAAAGATGCAAAAACCAAGGAAGTTGACATGTCAGACCTTGATTTATCAAGCCCTCCCAAAAAAGCTGCAAAAACCAAGGAAAGATCCGAAGAAGAACCCTCCAGAGGAAGCCGTCAAGGGAAACAAGACACATTTAAATTCTCCTTTGATTTCAATGAGTTGGATAGTTTTGATCTCGATTCAACTTTGTCGAAACGAGAAAAGGGTTCTAAAAAGAACCAAGATAGCAGCAAAGAGGTTGTCTATGATGGAGCTGGGTGTGGAGGCTCTAAATTCGATCTAGCTGAAGGGATTAGTACACTTGATGGTGAATCTGAGACAGTGGCCACATCAAAGATTAATACTTTGTTAGTTGATCCGGGGAATACTAATTCTATGAATGAACTTGCCTCAAAGTCTGAGACCTCTGGAAATTTTGAATTGCCTTCTGGTCCAAGATGTCAAGAAAATATAATGTCTAAAAGCATAGAAGGGTCAAATCAACAAAGCCACTTACCTGAGGAGACAATGCCCATAGAACCATATACTGAACAGACAATACATGATCTGCCTGCTGAACTTGTAGGAGGAGTTGATTTGAATGGGGATGCTGGTGTAGACGGAAAGAATGGTGGCTGTCCTCAGATCAAAAAAGTAAATATCATTTCAAGTGGAAAAGAAGCTGTTAATGACAAAATGATGATAGAAGATGGTCCTCATCTTGAAGACTTTCCTTTTAAAAATTCATCTCCATTAGATATTGGTAGATTGGGGAGCAGTTATGGTGATAGGAGCATGTCAGACAGTGATACTTTGACAGAAAATGATGAACCAGCTAAAGGTGATTTAGATAATGGAGAGACTTTGGCTTCAGTGGTCTCCAGGAAGACACCGCACAACATCAACAGTATCAAGGGAACCCAAAACTCAAGTTTAAAGCTTCCTTTGTCTACACAGGCCAGTGAATCTACAGTTGATAAAGTTACGTTGAGAAAGGAAAGCAGGGCTGGAGAACTCTGCTCGAAGATTTCTAAGAGATTGGAAAACACTGGACCTCAGTTGTATCAACCACCATTAATAGGAGGAAAATCTCTTTCGTCTGGAAACAACAAAGTTGGTTCCATGTATATAAGCCCTGCACTTGAGAAAGGGGAGGGCTCTGATTCTGACGGTGTACCAAACGAGACCAAACTAGTTGGGGATCCACAGCTGTGTGACAAAGAAGTAACAGAAAGGGAACCTGTAGTAGGAAGTGAGCAGAGAAAAAATCCTAAAGATCTCAGGGTTCAAGTGAGTTCTTCCAGCTCAACTGATAAGACAAGAAAACATAGTAGTCAAATTGTCAAACCTAAAATCATGCTCCCAAGCATGGAGCCAATAAGGAAATCAAAGATCATTTCTGCTGAAGGGAATAAACATTGTCCTGACAAACCAAACTGGAAAATATCCAAGAATATTGGTGGCAATAAACCTTTTTTGAATGCTCCACCTCAAAAAGAAGTTAAAACCCAGAGGAGTTCAGAGCAAAACAAGGAGCTGCATCACAATGTGGAATTGAAAACTAGGCAGATTGTTGATGGCATTGAAAAAATGCCACAAAACCTTTCCCTGAAACGAAAAGCATTTGAGGGATTAAATCCAGTTTTAGCATCCTTGAAGCCTCTAAAACGCCTCTCTCTGTTGCCAAGAGAAACCAGAAATTTCACAGAACCTTCAAAAGGAACTGTTGAACAGGTTTGCATTCGTGAGAACCATTTGGAGATCAAGACTAAGAGCCCAAGCTCTAGAGTTGGTAGAATGGTGAATGTGATGGAACTTGAATTTACTTCAGCAATGGAGACTGATGAAAATGTTGAAAAGGCTGAAGCATATCTCAAGGTGCTTGAAGATATATGCAATATGCTGAAAAAGAAACATGAGGAAGCCAAAGAAATGCTTGTAAGAGCTGTTGTGAACAACAATAATCTACTGATGCTTAACCATCCCATCTATGAAGCCAAGATATCCTTTAAAAGTTTTTTAGCTGTTACTGTGTTGTCTTTTTGTCTGCCATTTTGGTATAAAAATAAAGTTGAACATTCCTTCACAACTGAGAACATTCATAAAGTTCAGAAACTTGCTGCTACACTGGCATCCAAGGAACTTCAAGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

805

Amino Acids

88.88

Weight (kDa)

5.98

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 879, 1211
AciI CCGC 1 cut(s) 1154
AclWI GGATC 4 cut(s) 360, 632, 1457, 1470
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 6 cut(s) 419, 554, 694, 1003, 1960, 2081
AcuI CTGAAG 5 cut(s) 588, 1116, 1686, 2073, 2145
AdeI CACNNNGTG 1 cut(s) 1810
AfaI GTAC 2 cut(s) 580, 1437
AfiI CCNNNNNNNGG 6 cut(s) 386, 1100, 1340, 1508, 1630, 1979
AflIII ACRYGT 2 cut(s) 249, 309
AhlI ACTAGT 1 cut(s) 1453
AjnI CCWGG 2 cut(s) 95, 1142
AleI CACNNNNGTG 1 cut(s) 1471
Alw26I GTCTC 7 cut(s) 593, 677, 779, 1115, 1144, 1439, 2093
AlwI GGATC 4 cut(s) 360, 632, 1457, 1470
AlwNI CAGNNNCTG 1 cut(s) 96
AoxI GGCC 3 cut(s) 153, 606, 1218
ApeKI GCWGC 4 cut(s) 347, 510, 1798, 2381
ApoI RAATTY 6 cut(s) 419, 554, 694, 1003, 1960, 2081
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
AseI ATTAAT 2 cut(s) 621, 1337
Asp700I GAANNNNTTC 1 cut(s) 990
AspS9I GGNCC 4 cut(s) 153, 713, 974, 1313
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 7 cut(s) 31, 89, 227, 602, 1058, 1115, 2074
AvaII GGWCC 3 cut(s) 713, 974, 1313
AxyI CCTNAGG 1 cut(s) 780
BalI TGGCCA 1 cut(s) 608
BamHI GGATCC 1 cut(s) 1462
BanII GRGCYC 2 cut(s) 1421, 2039
BbsI GAAGAC 2 cut(s) 993, 1154
BbvCI CCTCAGC 1 cut(s) 89
BbvI GCAGC 4 cut(s) 334, 522, 1785, 2368
BceAI ACGGC 1 cut(s) 378
BciT130I CCWGG 2 cut(s) 97, 1144
BcnI CCSGG 1 cut(s) 642
BcoDI GTCTC 7 cut(s) 593, 677, 779, 1115, 1144, 1439, 2093
BcuI ACTAGT 1 cut(s) 1453
BfaI CTAG 6 cut(s) 62, 209, 563, 1454, 1824, 2046
BfmI CTRYAG 2 cut(s) 1230, 1503
BglII AGATCT 1 cut(s) 1537
BisI GCNGC 4 cut(s) 348, 511, 1799, 2382
BlsI GCNGC 4 cut(s) 349, 512, 1800, 2383
Bme1390I CCNGG 3 cut(s) 97, 642, 1144
Bme18I GGWCC 3 cut(s) 713, 974, 1313
BmgT120I GGNCC 4 cut(s) 153, 713, 974, 1313
BmiI GGNNCC 6 cut(s) 154, 1180, 1381, 1464, 1500, 1635
BmrFI CCNGG 3 cut(s) 97, 642, 1144
BmsI GCATC 6 cut(s) 277, 859, 1810, 1919, 2223, 2402
BpiI GAAGAC 2 cut(s) 993, 1154
BpmI CTGGAG 3 cut(s) 367, 1126, 1290
Bpu10I CCTNAGC 1 cut(s) 89
BpuEI CTTGAG 4 cut(s) 253, 1174, 1424, 2120
BpuMI CCSGG 1 cut(s) 642
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 3 cut(s) 677, 1144, 1439
BsaJI CCNNGG 5 cut(s) 15, 297, 357, 641, 2397
Bsc4I CCNNNNNNNGG 6 cut(s) 386, 1100, 1340, 1508, 1630, 1979
Bse1I ACTGG 5 cut(s) 1221, 1315, 1703, 1901, 2394
Bse21I CCTNAGG 1 cut(s) 780
Bse3DI GCAATG 1 cut(s) 2100
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 97, 1144
BseDI CCNNGG 5 cut(s) 15, 297, 357, 641, 2397
BseGI GGATG 6 cut(s) 11, 135, 874, 1910, 2242, 2393
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 6 cut(s) 386, 1100, 1340, 1508, 1630, 1979
BseMI GCAATG 1 cut(s) 2100
BseMII CTCAG 8 cut(s) 103, 588, 672, 771, 917, 1331, 1555, 2343
BseNI ACTGG 5 cut(s) 1221, 1315, 1703, 1901, 2394
BseRI GAGGAG 3 cut(s) 797, 864, 1789
BseXI GCAGC 4 cut(s) 334, 522, 1785, 2368
BseYI CCCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 1383
BshFI GGCC 3 cut(s) 155, 608, 1220
BsiSI CCGG 1 cut(s) 641
BslI CCNNNNNNNGG 6 cut(s) 386, 1100, 1340, 1508, 1630, 1979
BsmAI GTCTC 7 cut(s) 593, 677, 779, 1115, 1144, 1439, 2093
BsmI GAATGC 2 cut(s) 1747, 2001
BsnI GGCC 3 cut(s) 155, 608, 1220
Bso31I GGTCTC 3 cut(s) 677, 1144, 1439
Bsp1286I GDGCHC 2 cut(s) 1421, 2039
BspACI CCGC 1 cut(s) 1154
BspANI GGCC 3 cut(s) 155, 608, 1220
BspCNI CTCAG 8 cut(s) 102, 589, 673, 772, 916, 1330, 1554, 2344
BspLI GGNNCC 6 cut(s) 154, 1180, 1381, 1464, 1500, 1635
BspPI GGATC 4 cut(s) 360, 632, 1457, 1470
BspTNI GGTCTC 3 cut(s) 677, 1144, 1439
BsrDI GCAATG 1 cut(s) 2100
BsrI ACTGG 5 cut(s) 1221, 1315, 1703, 1901, 2394
BssECI CCNNGG 5 cut(s) 15, 297, 357, 641, 2397
BssT1I CCWWGG 4 cut(s) 15, 297, 357, 2397
Bst2UI CCWGG 2 cut(s) 97, 1144
Bst4CI ACNGT 7 cut(s) 604, 1067, 1169, 1234, 1433, 1987, 2293
BstC8I GCNNGC 1 cut(s) 834
BstENI CCTNNNNNAGG 2 cut(s) 1506, 1977
BstF5I GGATG 6 cut(s) 11, 135, 874, 1910, 2242, 2393
BstMAI GTCTC 7 cut(s) 593, 677, 779, 1115, 1144, 1439, 2093
BstMWI GCNNNNNNNGC 1 cut(s) 2390
BstNI CCWGG 2 cut(s) 97, 1144
BstNSI RCATGY 4 cut(s) 253, 313, 1060, 2415
BstSCI CCNGG 3 cut(s) 95, 640, 1142
BstSFI CTRYAG 2 cut(s) 1230, 1503
BstV1I GCAGC 4 cut(s) 334, 522, 1785, 2368
BstV2I GAAGAC 2 cut(s) 993, 1154
BstX2I RGATCY 3 cut(s) 365, 1462, 1537
BstYI RGATCY 3 cut(s) 365, 1462, 1537
Bsu36I CCTNAGG 1 cut(s) 780
BsuRI GGCC 3 cut(s) 155, 608, 1220
BtsCI GGATG 6 cut(s) 11, 135, 874, 1910, 2242, 2393
BtsIMutI CAGTG 6 cut(s) 609, 1072, 1140, 1228, 1308, 2387
Cac8I GCNNGC 1 cut(s) 834
CaiI CAGNNNCTG 1 cut(s) 96
Cfr13I GGNCC 4 cut(s) 153, 713, 974, 1313
Csp6I GTAC 2 cut(s) 579, 1436
CviQI GTAC 2 cut(s) 579, 1436
DraI TTTAAA 4 cut(s) 418, 1000, 1197, 2272
DraIII CACNNNGTG 1 cut(s) 1810
EaeI YGGCCR 1 cut(s) 606
Eco130I CCWWGG 4 cut(s) 15, 297, 357, 2397
Eco24I GRGCYC 2 cut(s) 1421, 2039
Eco31I GGTCTC 3 cut(s) 677, 1144, 1439
Eco32I GATATC 2 cut(s) 231, 2265
Eco47I GGWCC 3 cut(s) 713, 974, 1313
Eco57I CTGAAG 5 cut(s) 588, 1116, 1686, 2073, 2145
Eco81I CCTNAGG 1 cut(s) 780
EcoNI CCTNNNNNAGG 2 cut(s) 1506, 1977
EcoRII CCWGG 2 cut(s) 95, 1142
EcoRV GATATC 2 cut(s) 231, 2265
EcoT14I CCWWGG 4 cut(s) 15, 297, 357, 2397
EcoT38I GRGCYC 2 cut(s) 1421, 2039
ErhI CCWWGG 4 cut(s) 15, 297, 357, 2397
FalI AAGNNNNNCTT 4 cut(s) 2181, 2213, 2252, 2284
FblI GTMKAC 2 cut(s) 879, 1211
Fnu4HI GCNGC 4 cut(s) 348, 511, 1799, 2382
FokI GGATG 5 cut(s) 142, 881, 1897, 2229, 2380
FriOI GRGCYC 2 cut(s) 1421, 2039
Fsp4HI GCNGC 4 cut(s) 348, 511, 1799, 2382
FspBI CTAG 6 cut(s) 62, 209, 563, 1454, 1824, 2046
GluI GCNGC 4 cut(s) 348, 511, 1799, 2382
GsaI CCCAGC 1 cut(s) 540
GsuI CTGGAG 3 cut(s) 367, 1126, 1290
HaeIII GGCC 3 cut(s) 155, 608, 1220
HapII CCGG 1 cut(s) 641
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 1199
HinfI GANTC 4 cut(s) 461, 593, 1226, 1424
HpaII CCGG 1 cut(s) 641
HphI GGTGA 7 cut(s) 31, 89, 227, 602, 1058, 1115, 2074
Hpy166II GTNNAC 6 cut(s) 307, 581, 880, 1212, 1436, 2215
Hpy8I GTNNAC 6 cut(s) 307, 581, 880, 1212, 1436, 2215
HpyAV CCTTC 6 cut(s) 563, 717, 746, 1661, 1983, 2353
HpyCH4III ACNGT 7 cut(s) 604, 1067, 1169, 1234, 1433, 1987, 2293
HpyCH4IV ACGT 1 cut(s) 1247
HpyCH4V TGCA 6 cut(s) 290, 350, 1400, 1801, 2001, 2157
HpyF10VI GCNNNNNNNGC 1 cut(s) 2390
HpySE526I ACGT 1 cut(s) 1247
LmnI GCTCC 8 cut(s) 98, 533, 1035, 1053, 1626, 1633, 1750, 1795
Lsp1109I GCAGC 4 cut(s) 334, 522, 1785, 2368
LweI GCATC 6 cut(s) 277, 859, 1810, 1919, 2223, 2402
MaeI CTAG 6 cut(s) 62, 209, 563, 1454, 1824, 2046
MaeII ACGT 1 cut(s) 1247
MaeIII GTNAC 6 cut(s) 77, 215, 1243, 1475, 1486, 2287
MflI RGATCY 3 cut(s) 365, 1462, 1537
MhlI GDGCHC 2 cut(s) 1421, 2039
MlsI TGGCCA 1 cut(s) 608
MluNI TGGCCA 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 423
Mox20I TGGCCA 1 cut(s) 608
MroXI GAANNNNTTC 1 cut(s) 990
MscI TGGCCA 1 cut(s) 608
MslI CAYNNNNRTG 2 cut(s) 1471, 1806
Msp20I TGGCCA 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 1471
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 3 cut(s) 97, 642, 1144
Mva1269I GAATGC 2 cut(s) 1747, 2001
MvaI CCWGG 2 cut(s) 97, 1144
MwoI GCNNNNNNNGC 1 cut(s) 2390
NciI CCSGG 1 cut(s) 642
NlaIV GGNNCC 6 cut(s) 154, 1180, 1381, 1464, 1500, 1635
NmuCI GTSAC 3 cut(s) 77, 215, 1475
NspI RCATGY 4 cut(s) 253, 313, 1060, 2415
OliI CACNNNNGTG 1 cut(s) 1471
PciI ACATGT 2 cut(s) 249, 309
PctI GAATGC 2 cut(s) 1747, 2001
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 4 cut(s) 461, 593, 1226, 1424
PfoI TCCNGGA 2 cut(s) 95, 1142
PkrI GCNGC 4 cut(s) 349, 512, 1800, 2383
PscI ACATGT 2 cut(s) 249, 309
PshBI ATTAAT 2 cut(s) 621, 1337
Psp6I CCWGG 2 cut(s) 95, 1142
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 2 cut(s) 95, 1142
PspN4I GGNNCC 6 cut(s) 154, 1180, 1381, 1464, 1500, 1635
PspPI GGNCC 4 cut(s) 153, 713, 974, 1313
PsrI GAACNNNNNNTAC 2 cut(s) 804, 836
PstNI CAGNNNCTG 1 cut(s) 96
PsuI RGATCY 3 cut(s) 365, 1462, 1537
PvuII CAGCTG 1 cut(s) 1471
RsaI GTAC 2 cut(s) 580, 1437
RsaNI GTAC 2 cut(s) 579, 1436
RseI CAYNNNNRTG 2 cut(s) 1471, 1806
SatI GCNGC 4 cut(s) 348, 511, 1799, 2382
Sau96I GGNCC 4 cut(s) 153, 713, 974, 1313
ScrFI CCNGG 3 cut(s) 97, 642, 1144
SduI GDGCHC 2 cut(s) 1421, 2039
SfaNI GCATC 6 cut(s) 277, 859, 1810, 1919, 2223, 2402
SfcI CTRYAG 2 cut(s) 1230, 1503
SinI GGWCC 3 cut(s) 713, 974, 1313
SmiI ATTTAAAT 1 cut(s) 418
SmiMI CAYNNNNRTG 2 cut(s) 1471, 1806
SmlI CTYRAG 4 cut(s) 268, 1189, 1403, 2135
SmoI CTYRAG 4 cut(s) 268, 1189, 1403, 2135
SpeI ACTAGT 1 cut(s) 1453
SsiI CCGC 1 cut(s) 1154
SspI AATATT 1 cut(s) 1717
SspMI CTAG 6 cut(s) 62, 209, 563, 1454, 1824, 2046
StyD4I CCNGG 3 cut(s) 95, 640, 1142
StyI CCWWGG 4 cut(s) 15, 297, 357, 2397
SwaI ATTTAAAT 1 cut(s) 418
TaaI ACNGT 7 cut(s) 604, 1067, 1169, 1234, 1433, 1987, 2293
TaiI ACGT 1 cut(s) 1250
TaqI TCGA 5 cut(s) 261, 459, 473, 558, 1283
TatI WGTACW 1 cut(s) 578
TfiI GAWTC 4 cut(s) 461, 593, 1226, 1424
TscAI CASTG 6 cut(s) 609, 1072, 1140, 1228, 1315, 2394
TseFI GTSAC 3 cut(s) 77, 215, 1475
TseI GCWGC 4 cut(s) 347, 510, 1798, 2381
Tsp45I GTSAC 3 cut(s) 77, 215, 1475
TspDTI ATGAA 8 cut(s) 131, 674, 678, 996, 1104, 2121, 2268, 2351
TspGWI ACGGA 1 cut(s) 897
TspRI CASTG 6 cut(s) 609, 1072, 1140, 1228, 1315, 2394
VpaK11BI GGWCC 3 cut(s) 713, 974, 1313
VspI ATTAAT 2 cut(s) 621, 1337
XagI CCTNNNNNAGG 2 cut(s) 1506, 1977
XapI RAATTY 6 cut(s) 419, 554, 694, 1003, 1960, 2081
XbaI TCTAGA 3 cut(s) 61, 208, 2045
XceI RCATGY 4 cut(s) 253, 313, 1060, 2415
XmiI GTMKAC 2 cut(s) 879, 1211
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 6 cut(s) 62, 209, 563, 1454, 1824, 2046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.