Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

31245736 .. 31247708

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1241700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAACACACCGCCTCCGATTTCCGCAAGCCGGTACAATTTAGCGCGTGGTGAATATGGCAGTTCTTCGTGTTCCGGGAGCTTAAGCATTAGCCGGATTGAATCAAGCGTGTCAAAATCGGATTCTTTCATAACTCCAATCAGACAACCGCATTTTCCGACTTCATTCAGTTCTTTCTCTGCGCCTGGAATTATCGGCGATGATGATTTCGATGAGAGTATTTTGCAGGAAATTGACGCTTTAATCGAGCAGAAACCGAGTGTGGACATTCAGCGTGATGATATTGGGAGTTGTGGTAGTGATGTTAGTGCCGCATCAGCGCCGCCTTTGAGTAGTGAAAACCAAAGAGATTCTGTTAACCATGGATTGCCTAACATGCCGGATGAGTATTCGAAGTATTTGCTTTCTCTCAACGAAAGGCAGCGGGAGGCAGCTTGCAGCGATATTTCAGTACCTTTGATGATTGTTGCCGGCCCTGGAAGTGGAAAGACTTCAACGATGGTTGGGCGCGTTCTAATGATGCTCAATGAGGGCATTAGTGCGTCGAACATTCTAGCAATGACTTTCACTACAGCCGCAGCTTCCGAGATGAGAGATCGAATTGGATCCGTGACTGGGAAAGCAACGGCAAAACTACTAACAATCAGTACATTTCATTCATTTTCATTGCAACTTTGCCGATCACATGCTGAGAAACTCGAGCGTACACCAGAATTTTTGATATATGGACATGGGCAACAGAGAAGAGCAATCATTGAAGCTGTGCGGTTATCAGAAGATGAAAAGAGTAAAACGAATCTTAATGTTGCCATAGATGGGGAAGAGTCTAACGGCGTAACATCTCCACATCATTTTAAGGATGCATCAAAGAAATGGCTGAAGTTTGTGACACAGGCAAAAGCTTCCGGAAAGACTCCCGCTGAATGCCGAAGAATGGATGATGTGACAGGAGGTGAAATTCTCAGGAATTACAATGATATCTTGAAATCATGCAACGCTTTGGACTACCACGACTTAATTAGCTGCTCCGTGAAGCTGCTAAGTGATTTTCCTGAAGTGTTGAAGGAGTGCCAGGAGTCATGGAAAGCTATTGTAATAGACGAGTTTCAAGACACAAGTGCTATGCAATATAGTCTTTTGCAGATTCTTGCCTCTCATAACCACATAACCATTGTTGGTGATGATGATCAGGCATGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

401

Amino Acids

43.61

Weight (kDa)

5.15

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UvrD-helicase	PF00580	137 - 398	7.4e-60	UvrD/REP helicase N-terminal domain
AAA_19	PF13245	142 - 398	2.6e-21	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	46, 510
AccIII	TCCGGA	1 cut(s)	905
AciI	CCGC	9 cut(s)	11, 24, 149, 312, 323, 424, 576, 766, 918
AclWI	GGATC	2 cut(s)	600, 613
AcsI	RAATTY	2 cut(s)	713, 957
AcuI	CTGAAG	2 cut(s)	899, 1074
AfaI	GTAC	4 cut(s)	35, 453, 649, 706
AfiI	CCNNNNNNNGG	5 cut(s)	30, 482, 615, 816, 934
AflII	CTTAAG	1 cut(s)	82
AgsI	TTSAA	6 cut(s)	101, 495, 758, 985, 1063, 1109
AjnI	CCWGG	3 cut(s)	184, 475, 1071
AluBI	AGCT	8 cut(s)	81, 434, 581, 761, 902, 1023, 1036, 1088
AluI	AGCT	8 cut(s)	81, 434, 581, 761, 902, 1023, 1036, 1088
AlwI	GGATC	2 cut(s)	600, 613
Ama87I	CYCGRG	1 cut(s)	698
Aor13HI	TCCGGA	1 cut(s)	905
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	6 cut(s)	421, 431, 438, 578, 1023, 1036
ApoI	RAATTY	2 cut(s)	713, 957
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	4 cut(s)	46, 184, 322, 510
AspS9I	GGNCC	1 cut(s)	473
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	62, 965, 1190
AsuII	TTCGAA	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	698
BamHI	GGATCC	1 cut(s)	605
BbvI	GCAGC	6 cut(s)	433, 443, 450, 590, 1010, 1023
BccI	CCATC	2 cut(s)	493, 809
BceAI	ACGGC	2 cut(s)	642, 847
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	3 cut(s)	186, 477, 1073
BclI	TGATCA	1 cut(s)	1186
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	323
BfrI	CTTAAG	1 cut(s)	82
BisI	GCNGC	9 cut(s)	312, 323, 422, 432, 439, 576, 579, 1024, 1037
BlsI	GCNGC	9 cut(s)	313, 324, 423, 433, 440, 577, 580, 1025, 1038
Bme1390I	CCNGG	4 cut(s)	76, 186, 477, 1073
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	607
BmrFI	CCNGG	4 cut(s)	76, 186, 477, 1073
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	4 cut(s)	323, 510, 850, 872
BmuI	ACTGGG	1 cut(s)	624
Bpu14I	TTCGAA	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	1185
BsaJI	CCNNGG	2 cut(s)	361, 475
BsaWI	WCCGGW	1 cut(s)	905
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 280, 310
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 482, 615, 816, 934
Bse118I	RCCGGY	2 cut(s)	30, 470
Bse1I	ACTGG	1 cut(s)	619
Bse3DI	GCAATG	2 cut(s)	564, 665
Bse8I	GATNNNNATC	1 cut(s)	1185
BseAI	TCCGGA	1 cut(s)	905
BseBI	CCWGG	3 cut(s)	186, 477, 1073
BseDI	CCNNGG	2 cut(s)	361, 475
BseGI	GGATG	3 cut(s)	388, 865, 943
BseJI	GATNNNNATC	1 cut(s)	1185
BseLI	CCNNNNNNNGG	5 cut(s)	30, 482, 615, 816, 934
BseMI	GCAATG	2 cut(s)	564, 665
BseMII	CTCAG	2 cut(s)	681, 976
BseNI	ACTGG	1 cut(s)	619
BseXI	GCAGC	6 cut(s)	433, 443, 450, 590, 1010, 1023
Bsh1236I	CGCG	2 cut(s)	46, 510
BshFI	GGCC	1 cut(s)	474
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	6 cut(s)	31, 75, 94, 380, 471, 906
BslI	CCNNNNNNNGG	5 cut(s)	30, 482, 615, 816, 934
BsmI	GAATGC	1 cut(s)	929
BsnI	GGCC	1 cut(s)	474
BsoBI	CYCGRG	1 cut(s)	698
Bsp119I	TTCGAA	1 cut(s)	392
Bsp13I	TCCGGA	1 cut(s)	905
Bsp143I	GATC	4 cut(s)	595, 605, 680, 1186
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	9 cut(s)	11, 24, 149, 312, 323, 424, 576, 766, 918
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	2 cut(s)	682, 975
BspEI	TCCGGA	1 cut(s)	905
BspFNI	CGCG	2 cut(s)	46, 510
BspLI	GGNNCC	1 cut(s)	607
BspPI	GGATC	2 cut(s)	600, 613
BspQI	GCTCTTC	1 cut(s)	739
BspT104I	TTCGAA	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	564, 665
BsrFI	RCCGGY	2 cut(s)	30, 470
BsrI	ACTGG	1 cut(s)	619
BssAI	RCCGGY	2 cut(s)	30, 470
BssECI	CCNNGG	2 cut(s)	361, 475
BssMI	GATC	4 cut(s)	595, 605, 680, 1186
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	3 cut(s)	186, 477, 1073
Bst6I	CTCTTC	2 cut(s)	739, 816
BstAFI	CTTAAG	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	28, 436, 472
BstDEI	CTNAG	3 cut(s)	690, 962, 1040
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	388, 865, 943
BstFNI	CGCG	2 cut(s)	46, 510
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	4 cut(s)	46, 184, 322, 510
BstKTI	GATC	4 cut(s)	598, 608, 683, 1189
BstMBI	GATC	4 cut(s)	595, 605, 680, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 376
BstNI	CCWGG	3 cut(s)	186, 477, 1073
BstNSI	RCATGY	3 cut(s)	379, 689, 1197
BstSCI	CCNGG	4 cut(s)	74, 184, 475, 1071
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	2 cut(s)	46, 510
BstV1I	GCAGC	6 cut(s)	433, 443, 450, 590, 1010, 1023
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	388, 865, 943
Cac8I	GCNNGC	3 cut(s)	28, 436, 472
CfoI	GCGC	4 cut(s)	46, 184, 322, 510
Cfr10I	RCCGGY	2 cut(s)	30, 470
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	2 cut(s)	245, 531
Csp6I	GTAC	4 cut(s)	34, 452, 648, 705
CviAII	CATG	7 cut(s)	362, 376, 686, 731, 990, 1080, 1194
CviQI	GTAC	4 cut(s)	34, 452, 648, 705
DdeI	CTNAG	3 cut(s)	690, 962, 1040
DpnI	GATC	4 cut(s)	597, 607, 682, 1188
DpnII	GATC	4 cut(s)	595, 605, 680, 1186
Eam1104I	CTCTTC	2 cut(s)	739, 816
EarI	CTCTTC	2 cut(s)	739, 816
Eco130I	CCWWGG	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	979
Eco57I	CTGAAG	2 cut(s)	899, 1074
Eco88I	CYCGRG	1 cut(s)	698
EcoRII	CCWGG	3 cut(s)	184, 475, 1071
EcoRV	GATATC	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	865
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	7 cut(s)	365, 379, 689, 734, 993, 1083, 1197
FatI	CATG	7 cut(s)	361, 375, 685, 730, 989, 1079, 1193
FauI	CCCGC	2 cut(s)	417, 925
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	9 cut(s)	312, 323, 422, 432, 439, 576, 579, 1024, 1037
FokI	GGATG	3 cut(s)	395, 872, 950
Fsp4HI	GCNGC	9 cut(s)	312, 323, 422, 432, 439, 576, 579, 1024, 1037
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	4 cut(s)	45, 183, 321, 509
GluI	GCNGC	9 cut(s)	312, 323, 422, 432, 439, 576, 579, 1024, 1037
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	6 cut(s)	31, 75, 94, 380, 471, 906
HgaI	GACGC	2 cut(s)	245, 531
HhaI	GCGC	4 cut(s)	46, 184, 322, 510
Hin1II	CATG	7 cut(s)	365, 379, 689, 734, 993, 1083, 1197
Hin6I	GCGC	4 cut(s)	44, 182, 320, 508
HinP1I	GCGC	4 cut(s)	44, 182, 320, 508
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	8 cut(s)	101, 122, 350, 796, 824, 913, 1076, 1144
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	6 cut(s)	31, 75, 94, 380, 471, 906
HphI	GGTGA	3 cut(s)	62, 965, 1190
Hpy166II	GTNNAC	3 cut(s)	265, 358, 707
Hpy188I	TCNGA	6 cut(s)	18, 121, 143, 159, 586, 775
Hpy188III	TCNNGA	5 cut(s)	906, 964, 982, 1052, 1109
Hpy8I	GTNNAC	3 cut(s)	265, 358, 707
Hpy99I	CGWCG	1 cut(s)	547
HpyAV	CCTTC	1 cut(s)	1057
HpyCH4V	TGCA	7 cut(s)	226, 438, 670, 863, 993, 1126, 1141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 376
HpyF3I	CTNAG	3 cut(s)	690, 962, 1040
Hsp92II	CATG	7 cut(s)	365, 379, 689, 734, 993, 1083, 1197
HspAI	GCGC	4 cut(s)	44, 182, 320, 508
Kpn2I	TCCGGA	1 cut(s)	905
KroI	GCCGGC	1 cut(s)	470
KroNI	GCCGGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	1186
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	595, 605, 680, 1186
LguI	GCTCTTC	1 cut(s)	739
LmnI	GCTCC	2 cut(s)	78, 1031
Lsp1109I	GCAGC	6 cut(s)	433, 443, 450, 590, 1010, 1023
LweI	GCATC	4 cut(s)	323, 510, 850, 872
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	4 cut(s)	610, 835, 886, 943
MalI	GATC	4 cut(s)	597, 607, 682, 1188
MboI	GATC	4 cut(s)	595, 605, 680, 1186
MboII	GAAGA	5 cut(s)	57, 756, 788, 833, 942
MflI	RGATCY	1 cut(s)	605
MluCI	AATT	8 cut(s)	37, 189, 231, 600, 713, 957, 967, 1017
MlyI	GAGTC	3 cut(s)	833, 907, 1085
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	24, 421, 523, 944, 1162
Mph1103I	ATGCAT	1 cut(s)	865
MroI	TCCGGA	1 cut(s)	905
MroNI	GCCGGC	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	490
MseI	TTAA	6 cut(s)	83, 242, 357, 801, 855, 1016
MspA1I	CMGCKG	2 cut(s)	424, 920
MspCI	CTTAAG	1 cut(s)	82
MspI	CCGG	6 cut(s)	31, 75, 94, 380, 471, 906
MspR9I	CCNGG	4 cut(s)	76, 186, 477, 1073
Mva1269I	GAATGC	1 cut(s)	929
MvaI	CCWGG	3 cut(s)	186, 477, 1073
MvnI	CGCG	2 cut(s)	46, 510
MwoI	GCNNNNNNNGC	2 cut(s)	317, 376
NaeI	GCCGGC	1 cut(s)	472
NciI	CCSGG	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	595, 605, 680, 1186
NgoMIV	GCCGGC	1 cut(s)	470
NlaIII	CATG	7 cut(s)	365, 379, 689, 734, 993, 1083, 1197
NlaIV	GGNNCC	1 cut(s)	607
NmuCI	GTSAC	3 cut(s)	610, 886, 943
NsiI	ATGCAT	1 cut(s)	865
NspI	RCATGY	3 cut(s)	379, 689, 1197
NspV	TTCGAA	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	698
PciSI	GCTCTTC	1 cut(s)	739
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	929
PdiI	GCCGGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	5 cut(s)	101, 122, 350, 796, 1144
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	9 cut(s)	313, 324, 423, 433, 440, 577, 580, 1025, 1038
PleI	GAGTC	3 cut(s)	832, 907, 1084
PpsI	GAGTC	3 cut(s)	832, 907, 1084
Psp6I	CCWGG	3 cut(s)	184, 475, 1071
PspGI	CCWGG	3 cut(s)	184, 475, 1071
PspN4I	GGNNCC	1 cut(s)	607
PspPI	GGNCC	1 cut(s)	473
PspXI	VCTCGAGB	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	605
RsaI	GTAC	4 cut(s)	35, 453, 649, 706
RsaNI	GTAC	4 cut(s)	34, 452, 648, 705
SapI	GCTCTTC	1 cut(s)	739
SaqAI	TTAA	6 cut(s)	83, 242, 357, 801, 855, 1016
SatI	GCNGC	9 cut(s)	312, 323, 422, 432, 439, 576, 579, 1024, 1037
Sau3AI	GATC	4 cut(s)	595, 605, 680, 1186
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	3 cut(s)	833, 907, 1085
ScrFI	CCNGG	4 cut(s)	76, 186, 477, 1073
SfaNI	GCATC	4 cut(s)	323, 510, 850, 872
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	698
SfuI	TTCGAA	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	698
SmlI	CTYRAG	2 cut(s)	82, 698
SmoI	CTYRAG	2 cut(s)	82, 698
Sse9I	AATT	8 cut(s)	37, 189, 231, 600, 713, 957, 967, 1017
SsiI	CCGC	9 cut(s)	11, 24, 149, 312, 323, 424, 576, 766, 918
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	4 cut(s)	74, 184, 475, 1071
StyI	CCWWGG	1 cut(s)	361
TaqI	TCGA	6 cut(s)	210, 246, 392, 545, 598, 699
TasI	AATT	8 cut(s)	37, 189, 231, 600, 713, 957, 967, 1017
TatI	WGTACW	1 cut(s)	647
TauI	GCSGC	3 cut(s)	314, 325, 578
TfiI	GAWTC	5 cut(s)	101, 122, 350, 796, 1144
Tru1I	TTAA	6 cut(s)	83, 242, 357, 801, 855, 1016
Tru9I	TTAA	6 cut(s)	83, 242, 357, 801, 855, 1016
TseFI	GTSAC	3 cut(s)	610, 886, 943
TseI	GCWGC	6 cut(s)	421, 431, 438, 578, 1023, 1036
Tsp45I	GTSAC	3 cut(s)	610, 886, 943
TspDTI	ATGAA	7 cut(s)	17, 118, 153, 644, 648, 654, 795
TspGWI	ACGGA	2 cut(s)	598, 1018
Vha464I	CTTAAG	1 cut(s)	82
XapI	RAATTY	2 cut(s)	713, 957
XceI	RCATGY	3 cut(s)	379, 689, 1197
XhoI	CTCGAG	1 cut(s)	698
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	1 cut(s)	554
Zsp2I	ATGCAT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.