Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

73181015 .. 73182573

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035899

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAAGCTGTTGACGAAGTGTGCAATTGTTGTTCCACACTTCCACTCGGACGACAACGCTACCCTCCCTCGACCTCATTGCCCGCTCTTTCCGGCCACCAGTTCGACTACCGTGACGGTGCCATCTCCCTTCTCTTCCTCTGCGCCGTTTCGCCTGATGCACACTTCTCTCATAGCAAATTCCGAACTCTGACTCAGCTTAACCGGCGAGCTCCTCTTGCTGAGCTACCAGTAAATACTCCATCTCCATTTTCTGTGGATCACTGCAACTCAGCGGTTTTTGAATCCAGCACCATTCATATTAAAACTCTACAAGTTCAGCGTGATGTTAATGTGAATGGTTTTGCGGTGGCACGTGTGATTAGTAGCGCTGAAGATGATTCTGCTAAGCATGGATTACCGAGCATGTCAGAGGAGTACTTGAAGTATTTACAGTCTCTCAATGACCGGCAGTGCGAAGTAGCTTGTAGTGACATTGCAACACCACTGATGATTGCTGCAGGACCTGGAAGTGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

174

Amino Acids

18.74

Weight (kDa)

5.6

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	86
AciI	CCGC	3 cut(s)	84, 275, 347
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	393
AcvI	CACGTG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	419
AfeI	AGCGCT	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	284, 424
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	8, 199, 212, 226, 464
AluI	AGCT	5 cut(s)	8, 199, 212, 226, 464
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	506
Aor51HI	AGCGCT	1 cut(s)	370
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	146, 371
AspS9I	GGNCC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	131, 250
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	372
BisI	GCNGC	1 cut(s)	498
BlpI	GCTNAGC	2 cut(s)	222, 387
BlsI	GCNGC	1 cut(s)	499
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	148
Bpu1102I	GCTNAGC	2 cut(s)	222, 387
BsaAI	YACGTR	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse118I	RCCGGY	2 cut(s)	204, 447
Bse1I	ACTGG	2 cut(s)	100, 230
Bse3DI	GCAATG	2 cut(s)	77, 474
BseBI	CCWGG	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMI	GCAATG	2 cut(s)	77, 474
BseMII	CTCAG	3 cut(s)	209, 213, 285
BseNI	ACTGG	2 cut(s)	100, 230
BseRI	GAGGAG	2 cut(s)	204, 428
BseXI	GCAGC	1 cut(s)	484
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	3 cut(s)	93, 205, 448
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	2 cut(s)	222, 387
BspACI	CCGC	3 cut(s)	84, 275, 347
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	3 cut(s)	208, 214, 284
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	86
BsrDI	GCAATG	2 cut(s)	77, 474
BsrFI	RCCGGY	2 cut(s)	204, 447
BsrI	ACTGG	2 cut(s)	100, 230
BssAI	RCCGGY	2 cut(s)	204, 447
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	113, 119, 435
Bst6I	CTCTTC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	84, 210
BstDEI	CTNAG	4 cut(s)	195, 222, 271, 387
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	146, 371
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 218
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	96
BtsI	GCAGTG	2 cut(s)	262, 458
BtsIMutI	CAGTG	3 cut(s)	262, 458, 485
Cac8I	GCNNGC	2 cut(s)	84, 210
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	2 cut(s)	146, 371
Cfr10I	RCCGGY	2 cut(s)	204, 447
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	392, 406
CviJI	RGCY	6 cut(s)	8, 96, 199, 212, 226, 464
CviKI_1	RGCY	6 cut(s)	8, 96, 199, 212, 226, 464
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	4 cut(s)	195, 222, 271, 387
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	503
Eco47III	AGCGCT	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	393
Eco72I	CACGTG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	214
FaeI	CATG	2 cut(s)	395, 409
FaiI	YATR	4 cut(s)	174, 300, 393, 407
FatI	CATG	2 cut(s)	391, 405
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	498
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	498
GlaI	GCGC	2 cut(s)	145, 370
GluI	GCNGC	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	3 cut(s)	93, 205, 448
HhaI	GCGC	2 cut(s)	146, 371
Hin1II	CATG	2 cut(s)	395, 409
Hin6I	GCGC	2 cut(s)	144, 369
HinP1I	GCGC	2 cut(s)	144, 369
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	193, 284, 380
HpaII	CCGG	3 cut(s)	93, 205, 448
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	4 cut(s)	50, 185, 192, 412
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	3 cut(s)	113, 119, 435
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	5 cut(s)	24, 161, 267, 479, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 218
HpyF3I	CTNAG	4 cut(s)	195, 222, 271, 387
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	2 cut(s)	395, 409
HspAI	GCGC	2 cut(s)	144, 369
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	9 cut(s)	106, 113, 168, 218, 243, 301, 461, 486, 492
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	113, 470
MalI	GATC	1 cut(s)	261
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	127, 386
MfeI	CAATTG	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	25, 179, 517
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	6 cut(s)	75, 79, 85, 149, 225, 406
MseI	TTAA	3 cut(s)	201, 303, 330
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	93, 205, 448
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	205, 218
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	395, 409
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	113, 470
NspI	RCATGY	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	284, 380
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	1 cut(s)	187
PmaCI	CACGTG	1 cut(s)	356
PmlI	CACGTG	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	503
PspPPI	RGGWCCY	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	506
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	201, 303, 330
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	8 cut(s)	10, 77, 201, 214, 228, 358, 466, 508
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	503
Sse9I	AATT	3 cut(s)	25, 179, 517
SsiI	CCGC	3 cut(s)	84, 275, 347
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	113, 119, 435
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	71, 105
TasI	AATT	3 cut(s)	25, 179, 517
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	284, 380
Tru1I	TTAA	3 cut(s)	201, 303, 330
Tru9I	TTAA	3 cut(s)	201, 303, 330
TscAI	CASTG	3 cut(s)	269, 458, 492
TseFI	GTSAC	2 cut(s)	113, 470
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	2 cut(s)	113, 470
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	3 cut(s)	269, 458, 492
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	409
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.