Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

63594418 .. 63604515

Gene Structure 10098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG363200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGCCGGATGAGTACTTGAAGTATTTACAGTCTCTCAATGACCGGCAACGCGAAGCGGCTTGTAGTGACATTGCAACACCATTGATGATTGCTGCAGGACCTGGAAGTGGAAAGACCTCAACTATGGTTGGGCGTGTTCTAATGCTGCTTAATGAGGGGATTAGTGCATCCAACATTCTAGCAATGACTTTCACTATAGCAGCAGCTTCCGAGATGAGAGAGCGCATTGCAAAGGTGGCTGGGAAAGCAGCGGCAAAAGAACTTACAATCAGCACCTTTCATTCATTTTCGTTGCAGATTTGTCGATCACATGCAGAGAAACTTGAGCGCACACCAGAGTTCTTAATATATGGACATGGACAACAGAGAAGAGCAATTATTGAAGCTGTGCGGTTATCAGAAAATGGAAAGAGTAGGCCGAAATATAATGTCGGCATGGACAGTGAAGAGTCTAATGGTTTAACTTCTCCTCATCACTTTAAGGATGCGTCAAAGAAATGGCTGAAATTTGTAACTCAGGCCAAAGCTTCTGGGAAGACTCCTGCAGAATACAGTAAAATGGGCAATGAGATAGGGGCTGAGATTCTTGGAAACTACAATGATATCTTAAAATCTTGCAATGCCTTGGACTACCATGACTTGATTAGCTGCTCTGTGAAGCTGCTCACAGATTTTCCTGAAGTGTTAAAGGAGAGCCAGGATTCATGGAAAGCCATTGTCATAGATGAGTTTCAAGACACAAGTGCTATGCAATATAGTCTTCTGCGGATTCTTGCCTCTCACAACCACATAACCATTGTTGGAGATGATGATCAATCGATTTTCAGTTTCAATGGAGCAGACATTTCTGGATTTGATTCCTTCCGTAAGGATTTCCCCATTTACAAAGAGATTAGACTCAATAAAAACTATCGGTCTACACGCTATATTGTGGAAGCTGCATCATGTGTCATAAAAAACAATAAGAAGAGATGTCAGCTAAAGAATGTTGACACTGACAACTCTTCTGGATCCAAGATTGTTATCAAAGAATGCCACAATGAGGATGCACAATGTGCCTTTGTTGTTGACAAGATCTTGGAGACCACATCTAACCAATCAAATGTAAAGTGCTCATTCGGAAACATCGCAATCCTTTACCGGAGGCAGGTATCAGGAAAAGTCTTCCAAACAGCCCTTCGTGAAAGGAAAATACCTTTTAATGTTCATGGAGTAGCAGTTTATCGGAAGAAGGTAGTTAGAGCCATTATTGCTATGCTTAGAACAACTTTGCCTGGTTGTGATGATGGATCATATCGCCGAGTCTTCAAGGCTTTACTTCCTTTTGAGAAAGAGGAAAAGAAGAAGGTGATTGATTACATTGACAAAATTTCTACCGCCAGAAAATTCAGCTTCATATCAGCTGCTGGTGAAATTTTCAGTGCAAAAGTTTCTGGGAACTTGAAGAGGCCTCAGCTTACTCAAGGACGCAAGGTGCTGTTGACATTAGAGATGATTTCAAAACTCGTTCACAGGGAACAATCAATTTCAGCTGTCATAACCTCAGTGGCGAACATGGTACCACAGAAATACCTTCTGGAGCAGCGTGCTATCGTCGATGTTGATGGTGGGAAGTTGCTAAATGAAGACAATGACATGAGATCTGTTCTTCAGTACCTACTGGATGATATATCTGATTTTCTATCCACTCATTTTGCTGCGGCAGAAGGGGAGAGAGAAGTTGTAGAAGGAGATAAAGGATGTCTTAATTTACTTAAAGCTTTCATTGACTACATATCTGAGCGGGAGAGTGAAAACTTTCGCTCCCGAAGACATGACAATGAAACTTCTGTTACCTTAACTACCATCCATCAGTCAAAAGGTTTAGAATGGGACATTGTTTTCATAATTAAGGTAAATGAATGTGAGATACCGTTGTTGCATGAATTCAATGGTAGTGCAAAAGAGAATGGGACGTCCATTGAGGAGGAAAGACGCCTATTATATGTTGCAATGACTCGTGCTCGAACAAAACTTTTCATTCTTTATGTTTTGACGGATTCCAATTGGCAGATGCTTCAACCTTCACGGTTTCTCAGAGAAATTCCAAATCATCTTCGAGAAGAACAGGCTGACATAGAAAAGCAAGATTTACAGTCAAAGCATCATGACATTTCAAAAGGAACTACTGGGTTGTCGGCTGATCTACGACCAAACATTCGACCCTCTGAAGAAGATGTGGTGCAGAATGATTTTCACCCTAGCAAAATTGATGAAGCTTCTACAGAGTTGACTGAATTTGTGGAGGCAAACTTTGGAACTGGTTTCTTAAAAAGATTCTGTGTGGACGAGAGATCAATTATCTCACATTTATTTAATGAGTGGGCTAAGAAGCAAGCATTTCAACATCCTAAGAGGTTGCTTGACAAGGTGGGTTTTGTAATAGATGAACGTCTGCGAGTCAAGAACTACAAACACAAGGATGTGTTGCGCTTGCTGAAGTCTTACTTGAAATGTGACGATGCATTTCAATATGCGGAATACGTTTTGAGATGGCAGAAAATACCTGCTGATCAACGTGCTCATATGATGCGGGAAAAGCAGGAGCATTTCCAGAAGTTAAGGATTGAGAACTCAATGGGTTCATCTGCACCAACACCGAAACAGATTTCTTATCTGCAAAGTTTGGGTTGCACCGTGTCTCCGACGTCGCGCCTCCATGCTTCTCGTTTGATTGAGCAGTACAAGTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

911

Amino Acids

103.56

Weight (kDa)

8.72

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UvrD-helicase	PF00580	12 - 293	1.1e-68	UvrD/REP helicase N-terminal domain
AAA_19	PF13245	16 - 277	5.2e-22	AAA domain
UvrD_C	PF13361	298 - 677	3.8e-45	UvrD-like helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1958, 2690
Acc36I	ACCTGC	2 cut(s)	1138, 2554
Acc65I	GGTACC	1 cut(s)	1558
AccB1I	GGYRCC	1 cut(s)	1558
AccBSI	CCGCTC	1 cut(s)	1783
AccI	GTMKAC	1 cut(s)	917
AccII	CGCG	2 cut(s)	51, 2692
AciI	CCGC	9 cut(s)	56, 251, 391, 766, 1377, 1700, 1783, 2516, 2572
AclWI	GGATC	3 cut(s)	1005, 1018, 1297
AcsI	RAATTY	7 cut(s)	506, 1368, 1385, 1413, 1925, 2082, 2276
AcuI	CTGAAG	4 cut(s)	699, 1634, 2229, 2498
AcyI	GRCGYC	3 cut(s)	1955, 1975, 2687
AdeI	CACNNNGTG	1 cut(s)	1055
AfaI	GTAC	4 cut(s)	14, 1560, 1655, 2723
AfiI	CCNNNNNNNGG	3 cut(s)	107, 1042, 1147
AjnI	CCWGG	3 cut(s)	100, 696, 1273
AjuI	GAANNNNNNNTTGG	2 cut(s)	1161, 1193
Alw21I	GWGCWC	3 cut(s)	1115, 2005, 2563
Alw26I	GTCTC	3 cut(s)	36, 1076, 2685
AlwI	GGATC	3 cut(s)	1005, 1018, 1297
AlwNI	CAGNNNCTG	2 cut(s)	101, 1406
AoxI	GGCC	3 cut(s)	416, 519, 1448
ApoI	RAATTY	7 cut(s)	506, 1368, 1385, 1413, 1925, 2082, 2276
ArsI	GACNNNNNNTTYG	2 cut(s)	2181, 2213
Asp700I	GAANNNNTTC	1 cut(s)	1797
Asp718I	GGTACC	1 cut(s)	1558
AspLEI	GCGC	4 cut(s)	225, 330, 2472, 2694
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	3 cut(s)	1360, 1421, 2228
AvaII	GGWCC	1 cut(s)	98
BaeI	ACNNNNGTAYC	2 cut(s)	1901, 1934
BamHI	GGATCC	1 cut(s)	1010
BanI	GGYRCC	1 cut(s)	1558
BauI	CACGAG	1 cut(s)	1998
BbsI	GAAGAC	6 cut(s)	542, 752, 1156, 1297, 1632, 1816
Bbv12I	GWGCWC	3 cut(s)	1115, 2005, 2563
BbvCI	CCTCAGC	1 cut(s)	1452
BccI	CCATC	5 cut(s)	1280, 1598, 1853, 1857, 2526
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	3 cut(s)	102, 698, 1275
BclI	TGATCA	2 cut(s)	811, 2551
BcoDI	GTCTC	3 cut(s)	36, 1076, 2685
BfaI	CTAG	2 cut(s)	179, 2241
BfmI	CTRYAG	4 cut(s)	93, 195, 543, 2262
BfuAI	ACCTGC	2 cut(s)	1138, 2554
BglII	AGATCT	2 cut(s)	1074, 1640
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	3 cut(s)	102, 698, 1275
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	1012, 1560
BmrFI	CCNGG	3 cut(s)	102, 698, 1275
BmrI	ACTGGG	1 cut(s)	2178
BmsI	GCATC	8 cut(s)	176, 475, 950, 1036, 2043, 2152, 2491, 2559
BmuI	ACTGGG	1 cut(s)	2178
BpiI	GAAGAC	6 cut(s)	542, 752, 1156, 1297, 1632, 1816
BpmI	CTGGAG	1 cut(s)	1598
Bpu10I	CCTNAGC	1 cut(s)	1452
BpuEI	CTTGAG	2 cut(s)	344, 1446
Bsa29I	ATCGAT	1 cut(s)	818
BsaBI	GATNNNNATC	2 cut(s)	810, 1022
BsaHI	GRCGYC	3 cut(s)	1955, 1975, 2687
BsaI	GGTCTC	1 cut(s)	1076
BsaJI	CCNNGG	1 cut(s)	624
BsaWI	WCCGGW	1 cut(s)	1140
BsaXI	ACNNNNNCTCC	6 cut(s)	1203, 1233, 1787, 1817, 2665, 2695
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 1042, 1147
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	3 cut(s)	1665, 2173, 2305
Bse3DI	GCAATG	6 cut(s)	69, 189, 225, 571, 625, 1998
Bse8I	GATNNNNATC	2 cut(s)	810, 1022
BseBI	CCWGG	3 cut(s)	102, 698, 1275
BseCI	ATCGAT	1 cut(s)	818
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	9 cut(s)	13, 167, 490, 1051, 1669, 1745, 1845, 2386, 2467
BseJI	GATNNNNATC	2 cut(s)	810, 1022
BseLI	CCNNNNNNNGG	3 cut(s)	107, 1042, 1147
BseMI	GCAATG	6 cut(s)	69, 189, 225, 571, 625, 1998
BseMII	CTCAG	6 cut(s)	530, 570, 1466, 1557, 1770, 2089
BseNI	ACTGG	3 cut(s)	1665, 2173, 2305
BseRI	GAGGAG	2 cut(s)	459, 1979
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	2 cut(s)	2243, 2613
Bsh1236I	CGCG	2 cut(s)	51, 2692
BshFI	GGCC	3 cut(s)	418, 521, 1450
BshNI	GGYRCC	1 cut(s)	1558
BshVI	ATCGAT	1 cut(s)	818
BsiHKAI	GWGCWC	3 cut(s)	1115, 2005, 2563
BsiSI	CCGG	3 cut(s)	5, 43, 1141
BslFI	GGGAC	2 cut(s)	1886, 1966
BslI	CCNNNNNNNGG	3 cut(s)	107, 1042, 1147
BsmAI	GTCTC	3 cut(s)	36, 1076, 2685
BsmFI	GGGAC	2 cut(s)	1886, 1966
BsmI	GAATGC	1 cut(s)	1037
BsnI	GGCC	3 cut(s)	418, 521, 1450
Bso31I	GGTCTC	1 cut(s)	1076
Bsp1286I	GDGCHC	3 cut(s)	1115, 2005, 2563
Bsp143I	GATC	9 cut(s)	305, 811, 1010, 1074, 1289, 1640, 2182, 2333, 2551
BspACI	CCGC	9 cut(s)	56, 251, 391, 766, 1377, 1700, 1783, 2516, 2572
BspANI	GGCC	3 cut(s)	418, 521, 1450
BspCNI	CTCAG	6 cut(s)	529, 571, 1465, 1556, 1771, 2088
BspDI	ATCGAT	1 cut(s)	818
BspFNI	CGCG	2 cut(s)	51, 2692
BspHI	TCATGA	1 cut(s)	2146
BspLI	GGNNCC	2 cut(s)	1012, 1560
BspMAI	CTGCAG	2 cut(s)	97, 547
BspMI	ACCTGC	2 cut(s)	1138, 2554
BspPI	GGATC	3 cut(s)	1005, 1018, 1297
BspQI	GCTCTTC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	1558
BspTNI	GGTCTC	1 cut(s)	1076
BsrBI	CCGCTC	1 cut(s)	1783
BsrDI	GCAATG	6 cut(s)	69, 189, 225, 571, 625, 1998
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	1665, 2173, 2305
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	9 cut(s)	305, 811, 1010, 1074, 1289, 1640, 2182, 2333, 2551
BssNI	GRCGYC	3 cut(s)	1955, 1975, 2687
BssSI	CACGAG	1 cut(s)	1998
BssT1I	CCWWGG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	1998
Bst2UI	CCWGG	3 cut(s)	102, 698, 1275
Bst4CI	ACNGT	8 cut(s)	30, 443, 554, 1914, 2070, 2136, 2677, 2733
Bst6I	CTCTTC	5 cut(s)	364, 441, 962, 1009, 1439
BstACI	GRCGYC	3 cut(s)	1955, 1975, 2687
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstC8I	GCNNGC	3 cut(s)	1587, 2376, 2474
BstDEI	CTNAG	9 cut(s)	516, 579, 1259, 1452, 1543, 1779, 2075, 2367, 2391
BstF5I	GGATG	9 cut(s)	13, 167, 490, 1051, 1669, 1745, 1845, 2386, 2467
BstFNI	CGCG	2 cut(s)	51, 2692
BstHHI	GCGC	4 cut(s)	225, 330, 2472, 2694
BstKTI	GATC	9 cut(s)	308, 814, 1013, 1077, 1292, 1643, 2185, 2336, 2554
BstMAI	GTCTC	3 cut(s)	36, 1076, 2685
BstMBI	GATC	9 cut(s)	305, 811, 1010, 1074, 1289, 1640, 2182, 2333, 2551
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 245, 1055, 1250, 2578
BstNI	CCWGG	3 cut(s)	102, 698, 1275
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	3 cut(s)	100, 696, 1273
BstSFI	CTRYAG	4 cut(s)	93, 195, 543, 2262
BstUI	CGCG	2 cut(s)	51, 2692
BstV2I	GAAGAC	6 cut(s)	542, 752, 1156, 1297, 1632, 1816
BstX2I	RGATCY	3 cut(s)	1010, 1074, 1640
BstYI	RGATCY	3 cut(s)	1010, 1074, 1640
Bsu15I	ATCGAT	1 cut(s)	818
BsuRI	GGCC	3 cut(s)	418, 521, 1450
BsuTUI	ATCGAT	1 cut(s)	818
BtgZI	GCGATG	1 cut(s)	1111
BtsCI	GGATG	9 cut(s)	13, 167, 490, 1051, 1669, 1745, 1845, 2386, 2467
BtsIMutI	CAGTG	5 cut(s)	448, 993, 1426, 1551, 2729
BveI	ACCTGC	2 cut(s)	1138, 2554
Cac8I	GCNNGC	3 cut(s)	1587, 2376, 2474
CaiI	CAGNNNCTG	2 cut(s)	101, 1406
CciI	TCATGA	1 cut(s)	2146
CfoI	GCGC	4 cut(s)	225, 330, 2472, 2694
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	818
CseI	GACGC	3 cut(s)	477, 1476, 1983
Csp6I	GTAC	4 cut(s)	13, 1559, 1654, 2722
CspCI	CAANNNNNGTGG	2 cut(s)	1675, 1710
CviQI	GTAC	4 cut(s)	13, 1559, 1654, 2722
DdeI	CTNAG	9 cut(s)	516, 579, 1259, 1452, 1543, 1779, 2075, 2367, 2391
DpnI	GATC	9 cut(s)	307, 813, 1012, 1076, 1291, 1642, 2184, 2335, 2553
DpnII	GATC	9 cut(s)	305, 811, 1010, 1074, 1289, 1640, 2182, 2333, 2551
DraIII	CACNNNGTG	1 cut(s)	1055
Eam1104I	CTCTTC	5 cut(s)	364, 441, 962, 1009, 1439
EarI	CTCTTC	5 cut(s)	364, 441, 962, 1009, 1439
Eco130I	CCWWGG	1 cut(s)	624
Eco147I	AGGCCT	1 cut(s)	1450
Eco31I	GGTCTC	1 cut(s)	1076
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	4 cut(s)	699, 1634, 2229, 2498
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	1925
EcoRII	CCWGG	3 cut(s)	100, 696, 1273
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	2506
ErhI	CCWWGG	1 cut(s)	624
FalI	AAGNNNNNCTT	4 cut(s)	1728, 1760, 2471, 2503
FaqI	GGGAC	2 cut(s)	1886, 1966
FauI	CCCGC	2 cut(s)	1776, 2565
FauNDI	CATATG	1 cut(s)	2565
FbaI	TGATCA	2 cut(s)	811, 2551
FblI	GTMKAC	1 cut(s)	917
FokI	GGATG	9 cut(s)	20, 154, 497, 1058, 1676, 1752, 1832, 2373, 2474
FspBI	CTAG	2 cut(s)	179, 2241
GlaI	GCGC	4 cut(s)	224, 329, 2471, 2693
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	1598
HaeIII	GGCC	3 cut(s)	418, 521, 1450
HapII	CCGG	3 cut(s)	5, 43, 1141
HgaI	GACGC	3 cut(s)	477, 1476, 1983
HhaI	GCGC	4 cut(s)	225, 330, 2472, 2694
Hin1I	GRCGYC	3 cut(s)	1955, 1975, 2687
Hin6I	GCGC	4 cut(s)	223, 328, 2470, 2692
HinP1I	GCGC	4 cut(s)	223, 328, 2470, 2692
HincII	GTYRAC	4 cut(s)	991, 1069, 1482, 2271
HindII	GTYRAC	4 cut(s)	991, 1069, 1482, 2271
HindIII	AAGCTT	3 cut(s)	525, 1758, 2256
HpaII	CCGG	3 cut(s)	5, 43, 1141
HphI	GGTGA	3 cut(s)	1360, 1421, 2228
Hpy166II	GTNNAC	7 cut(s)	918, 991, 1069, 1482, 1510, 2271, 2326
Hpy188I	TCNGA	9 cut(s)	211, 400, 1121, 1227, 1675, 1780, 2078, 2209, 2685
Hpy8I	GTNNAC	7 cut(s)	918, 991, 1069, 1482, 1510, 2271, 2326
Hpy99I	CGWCG	3 cut(s)	1598, 2689, 2692
HpyAV	CCTTC	8 cut(s)	871, 1187, 1225, 1339, 1583, 1700, 1721, 2073
HpyCH4III	ACNGT	8 cut(s)	30, 443, 554, 1914, 2070, 2136, 2677, 2733
HpyCH4IV	ACGT	5 cut(s)	1955, 2431, 2523, 2557, 2687
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 245, 1055, 1250, 2578
HpyF3I	CTNAG	9 cut(s)	516, 579, 1259, 1452, 1543, 1779, 2075, 2367, 2391
HpySE526I	ACGT	5 cut(s)	1955, 2431, 2523, 2557, 2687
Hsp92I	GRCGYC	3 cut(s)	1955, 1975, 2687
HspAI	GCGC	4 cut(s)	223, 328, 2470, 2692
KpnI	GGTACC	1 cut(s)	1562
Ksp22I	TGATCA	2 cut(s)	811, 2551
Kzo9I	GATC	9 cut(s)	305, 811, 1010, 1074, 1289, 1640, 2182, 2333, 2551
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	4 cut(s)	836, 1579, 1808, 2584
LweI	GCATC	8 cut(s)	176, 475, 950, 1036, 2043, 2152, 2491, 2559
MaeI	CTAG	2 cut(s)	179, 2241
MaeII	ACGT	5 cut(s)	1955, 2431, 2523, 2557, 2687
MaeIII	GTNAC	5 cut(s)	65, 511, 1831, 2495, 2727
MalI	GATC	9 cut(s)	307, 813, 1012, 1076, 1291, 1642, 2184, 2335, 2553
MbiI	CCGCTC	1 cut(s)	1783
MboI	GATC	9 cut(s)	305, 811, 1010, 1074, 1289, 1640, 2182, 2333, 2551
MfeI	CAATTG	1 cut(s)	2044
MflI	RGATCY	3 cut(s)	1010, 1074, 1640
MhlI	GDGCHC	3 cut(s)	1115, 2005, 2563
MlyI	GAGTC	6 cut(s)	458, 532, 891, 1311, 1990, 2448
MmeI	TCCRAC	3 cut(s)	195, 781, 2708
Mph1103I	ATGCAT	1 cut(s)	2506
MroXI	GAANNNNTTC	1 cut(s)	1797
MslI	CAYNNNNRTG	2 cut(s)	1818, 2460
MspA1I	CMGCKG	3 cut(s)	251, 1403, 1532
MspI	CCGG	3 cut(s)	5, 43, 1141
MspR9I	CCNGG	3 cut(s)	102, 698, 1275
MunI	CAATTG	1 cut(s)	2044
Mva1269I	GAATGC	1 cut(s)	1037
MvaI	CCWGG	3 cut(s)	102, 698, 1275
MvnI	CGCG	2 cut(s)	51, 2692
MwoI	GCNNNNNNNGC	5 cut(s)	236, 245, 1055, 1250, 2578
NdeI	CATATG	1 cut(s)	2565
NdeII	GATC	9 cut(s)	305, 811, 1010, 1074, 1289, 1640, 2182, 2333, 2551
NlaIV	GGNNCC	2 cut(s)	1012, 1560
NmeAIII	GCCGAG	1 cut(s)	1325
NmuCI	GTSAC	3 cut(s)	65, 2495, 2727
NsiI	ATGCAT	1 cut(s)	2506
NspI	RCATGY	1 cut(s)	314
PagI	TCATGA	1 cut(s)	2146
PceI	AGGCCT	1 cut(s)	1450
PciSI	GCTCTTC	1 cut(s)	364
PctI	GAATGC	1 cut(s)	1037
PdmI	GAANNNNTTC	1 cut(s)	1797
PfeI	GAWTC	6 cut(s)	583, 701, 769, 857, 2039, 2316
PleI	GAGTC	6 cut(s)	457, 532, 891, 1310, 1990, 2447
PpsI	GAGTC	6 cut(s)	457, 532, 891, 1310, 1990, 2447
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	100, 696, 1273
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	3 cut(s)	100, 696, 1273
PspN4I	GGNNCC	2 cut(s)	1012, 1560
PspPI	GGNCC	1 cut(s)	98
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	2 cut(s)	97, 547
PstNI	CAGNNNCTG	2 cut(s)	101, 1406
PsuI	RGATCY	3 cut(s)	1010, 1074, 1640
PvuII	CAGCTG	2 cut(s)	1403, 1532
RsaI	GTAC	4 cut(s)	14, 1560, 1655, 2723
RsaNI	GTAC	4 cut(s)	13, 1559, 1654, 2722
RseI	CAYNNNNRTG	2 cut(s)	1818, 2460
SapI	GCTCTTC	1 cut(s)	364
Sau3AI	GATC	9 cut(s)	305, 811, 1010, 1074, 1289, 1640, 2182, 2333, 2551
Sau96I	GGNCC	1 cut(s)	98
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	6 cut(s)	458, 532, 891, 1311, 1990, 2448
ScrFI	CCNGG	3 cut(s)	102, 698, 1275
SduI	GDGCHC	3 cut(s)	1115, 2005, 2563
SfaNI	GCATC	8 cut(s)	176, 475, 950, 1036, 2043, 2152, 2491, 2559
SfcI	CTRYAG	4 cut(s)	93, 195, 543, 2262
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	1818, 2460
SmlI	CTYRAG	2 cut(s)	323, 1461
SmoI	CTYRAG	2 cut(s)	323, 1461
SseBI	AGGCCT	1 cut(s)	1450
SsiI	CCGC	9 cut(s)	56, 251, 391, 766, 1377, 1700, 1783, 2516, 2572
SspMI	CTAG	2 cut(s)	179, 2241
StuI	AGGCCT	1 cut(s)	1450
StyD4I	CCNGG	3 cut(s)	100, 696, 1273
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	8 cut(s)	30, 443, 554, 1914, 2070, 2136, 2677, 2733
TaiI	ACGT	5 cut(s)	1958, 2434, 2526, 2560, 2690
TaqI	TCGA	6 cut(s)	304, 818, 1596, 2005, 2098, 2200
TaqII	GACCGA	1 cut(s)	903
TatI	WGTACW	2 cut(s)	12, 2721
TauI	GCSGC	3 cut(s)	59, 254, 1703
TfiI	GAWTC	6 cut(s)	583, 701, 769, 857, 2039, 2316
TscAI	CASTG	5 cut(s)	448, 1000, 1426, 1551, 2736
TseFI	GTSAC	3 cut(s)	65, 2495, 2727
Tsp45I	GTSAC	3 cut(s)	65, 2495, 2727
TspGWI	ACGGA	2 cut(s)	854, 2051
TspRI	CASTG	5 cut(s)	448, 1000, 1426, 1551, 2736
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	7 cut(s)	506, 1368, 1385, 1413, 1925, 2082, 2276
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	1797
XspI	CTAG	2 cut(s)	179, 2241
ZraI	GACGTC	2 cut(s)	1956, 2688
ZrmI	AGTACT	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	2506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.