Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

23443230 .. 23446418

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21980.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCTTGTTGATGTAGCACGTTTCTTATGGCAGGTAGTTAGAGCCATTATTGCTATGATTAAAACGACTTTGCCTGGTTGTGATGATGGATCATATAGGCAAGTCTTCAAGGCTTTACTTCCTTTTGAGAAAGAGGAAAAGAAGAAGGTGATCGATTATATCGACAAAATTTTGACTCATAGAAAATGCAGCTTCATATCAGCTGCTTGTGACATCTTTAGTGCAAAAATTTCTGGTACCTTGAAGAGGACTCAGCTTACCCAGGGACGCAAGGTGCTGTTAACATTAGAGATGATTTCAAAACTTGTTCTCAGGGAACAATCGATTTCAGCTGTCATAACCTCAGTTGCGTATATGGTACCACAGAAGTACCTTCTTGGGCAACGTGCGGTTGTGGATGTAGATGGAGGAAAACTGCTGAATGAAGACAATGACATGAGATCTGTTCTTCAGTACCTACTGGACGACGTATCTGATTTCTTATCAACTCATTTTGTTGCGGGAGAAGGGGAGAGAGAAGTCATAGCAGAAGAAAAAGGCTGTGTTAATTTACTCAAAGCTTTCATCGACTACATATCTGAGCGGGAGAGTGAAACTTTTCGCTCCCGAAGACATGACAACCAAAGTTCTGTCACTTTGACTACCATTCATCAGTCAAAAGGTTTAGAGTGGGATATAGTTTTCATAATTAAGGTAAATGAATCTGAGATTCCGTTGTTGCATGAATTCAATGGCATTGCAAAAGAGAATTGGACCTCCATTGAGGAGGAAAGACGCCTTTTATATGTTGCAATGACTCGTGCTCGAAAAAAGCTTTTCATTCTTTATGTAACAACGGATTCCAGTTGGCAGATGCTTCAACCTTCACGATTTCTGAAAGAAATTCCAAATCATCTACGAGATGTCCAGGCTGACGTAAGTACAGAACGCTTGCAATCAAAGCACCATGACACTTCAAAAGAGACTACTCCATCGACAGACAATCCCAAACCAAACCTCCTACCTTCTGAAGTTGTTATGGTGCAAAATGATCTCCATCATAGTAAATTTGACGATGCCTCTGCAGAATTGATGGAATTTGGGGAGGAAAACCATGTAAATGGTTTCTTAAAAAGATTCAGTGTGGATGAGAGATCGATTATCTCACATTTATTTAATGACTGGGCTAAGAAGCAAGCATTTCAAGATCCTAAGAGATTACTTGACAAGGTCGGTTTTGTAATAGATGAACGCATACGAGCCAAGAACTTCAAACATAAGGTCATAAATTTAGTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

427

Amino Acids

49.04

Weight (kDa)

6.91

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
Acc65I	GGTACC	2 cut(s)	236, 358
AccB1I	GGYRCC	2 cut(s)	236, 358
AccBSI	CCGCTC	1 cut(s)	583
AciI	CCGC	3 cut(s)	389, 500, 583
AclWI	GGATC	2 cut(s)	97, 1181
AcsI	RAATTY	7 cut(s)	168, 228, 725, 882, 1046, 1076, 1267
AcuI	CTGAAG	2 cut(s)	434, 1029
AcyI	GRCGYC	1 cut(s)	775
AfaI	GTAC	5 cut(s)	238, 360, 371, 455, 922
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	8 cut(s)	109, 244, 300, 730, 860, 957, 1184, 1252
AjnI	CCWGG	3 cut(s)	73, 261, 906
AluBI	AGCT	6 cut(s)	192, 203, 256, 332, 560, 814
AluI	AGCT	6 cut(s)	192, 203, 256, 332, 560, 814
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	1 cut(s)	956
AlwI	GGATC	2 cut(s)	97, 1181
ApeKI	GCWGC	2 cut(s)	189, 203
ApoI	RAATTY	7 cut(s)	168, 228, 725, 882, 1046, 1076, 1267
ArsI	GACNNNNNNTTYG	2 cut(s)	1245, 1277
Asp700I	GAANNNNTTC	1 cut(s)	597
Asp718I	GGTACC	2 cut(s)	236, 358
AspS9I	GGNCC	1 cut(s)	753
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	753
BaeI	ACNNNNGTAYC	2 cut(s)	353, 386
BanI	GGYRCC	2 cut(s)	236, 358
BauI	CACGAG	1 cut(s)	798
BbsI	GAAGAC	3 cut(s)	97, 432, 616
Bbv12I	GWGCWC	1 cut(s)	805
BbvI	GCAGC	2 cut(s)	190, 201
BccI	CCATC	5 cut(s)	80, 398, 979, 1044, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	1043, 1077
BciT130I	CCWGG	3 cut(s)	75, 263, 908
BcoDI	GTCTC	1 cut(s)	956
BfmI	CTRYAG	1 cut(s)	1062
BfuAI	ACCTGC	1 cut(s)	22
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	2 cut(s)	190, 204
BlsI	GCNGC	2 cut(s)	191, 205
Bme1390I	CCNGG	3 cut(s)	75, 263, 908
Bme18I	GGWCC	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	753
BmiI	GGNNCC	2 cut(s)	238, 360
BmrFI	CCNGG	3 cut(s)	75, 263, 908
BmrI	ACTGGG	1 cut(s)	1171
BmsI	GCATC	2 cut(s)	843, 1045
BmuI	ACTGGG	1 cut(s)	1171
BpiI	GAAGAC	3 cut(s)	97, 432, 616
Bsa29I	ATCGAT	3 cut(s)	153, 323, 1136
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaHI	GRCGYC	1 cut(s)	775
BsaJI	CCNNGG	2 cut(s)	261, 262
BsaXI	ACNNNNNCTCC	2 cut(s)	981, 1011
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	3 cut(s)	465, 843, 1166
Bse3DI	GCAATG	2 cut(s)	735, 798
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	3 cut(s)	75, 263, 908
BseCI	ATCGAT	3 cut(s)	153, 323, 1136
BseDI	CCNNGG	2 cut(s)	261, 262
BseGI	GGATG	2 cut(s)	403, 1132
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	2 cut(s)	735, 798
BseMII	CTCAG	5 cut(s)	266, 325, 357, 570, 696
BseNI	ACTGG	3 cut(s)	465, 843, 1166
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	2 cut(s)	190, 201
BshNI	GGYRCC	2 cut(s)	236, 358
BshVI	ATCGAT	3 cut(s)	153, 323, 1136
BsiHKAI	GWGCWC	1 cut(s)	805
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	956
BsmFI	GGGAC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp143I	GATC	6 cut(s)	89, 150, 440, 1030, 1133, 1186
BspACI	CCGC	3 cut(s)	389, 500, 583
BspCNI	CTCAG	5 cut(s)	265, 324, 356, 571, 697
BspDI	ATCGAT	3 cut(s)	153, 323, 1136
BspLI	GGNNCC	2 cut(s)	238, 360
BspMAI	CTGCAG	1 cut(s)	1066
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	2 cut(s)	97, 1181
BspT107I	GGYRCC	2 cut(s)	236, 358
BsrBI	CCGCTC	1 cut(s)	583
BsrDI	GCAATG	2 cut(s)	735, 798
BsrI	ACTGG	3 cut(s)	465, 843, 1166
BssECI	CCNNGG	2 cut(s)	261, 262
BssMI	GATC	6 cut(s)	89, 150, 440, 1030, 1133, 1186
BssNI	GRCGYC	1 cut(s)	775
BssSI	CACGAG	1 cut(s)	798
Bst2BI	CACGAG	1 cut(s)	798
Bst2UI	CCWGG	3 cut(s)	75, 263, 908
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	775
BstC8I	GCNNGC	2 cut(s)	932, 1176
BstDEI	CTNAG	7 cut(s)	252, 311, 343, 579, 705, 1167, 1191
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	403, 1132
BstKTI	GATC	6 cut(s)	92, 153, 443, 1033, 1136, 1189
BstMAI	GTCTC	1 cut(s)	956
BstMBI	GATC	6 cut(s)	89, 150, 440, 1030, 1133, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 940
BstNI	CCWGG	3 cut(s)	75, 263, 908
BstSCI	CCNGG	3 cut(s)	73, 261, 906
BstSFI	CTRYAG	1 cut(s)	1062
BstV1I	GCAGC	2 cut(s)	190, 201
BstV2I	GAAGAC	3 cut(s)	97, 432, 616
BstX2I	RGATCY	2 cut(s)	440, 1186
BstXI	CCANNNNNNTGG	1 cut(s)	1100
BstYI	RGATCY	2 cut(s)	440, 1186
Bsu15I	ATCGAT	3 cut(s)	153, 323, 1136
BsuTUI	ATCGAT	3 cut(s)	153, 323, 1136
BtsCI	GGATG	2 cut(s)	403, 1132
BtsIMutI	CAGTG	1 cut(s)	1126
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	932, 1176
Cfr13I	GGNCC	1 cut(s)	753
ClaI	ATCGAT	3 cut(s)	153, 323, 1136
CseI	GACGC	2 cut(s)	276, 783
Csp6I	GTAC	5 cut(s)	237, 359, 370, 454, 921
CviAII	CATG	5 cut(s)	436, 614, 722, 947, 1094
CviQI	GTAC	5 cut(s)	237, 359, 370, 454, 921
DdeI	CTNAG	7 cut(s)	252, 311, 343, 579, 705, 1167, 1191
DpnI	GATC	6 cut(s)	91, 152, 442, 1032, 1135, 1188
DpnII	GATC	6 cut(s)	89, 150, 440, 1030, 1133, 1186
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	753
Eco57I	CTGAAG	2 cut(s)	434, 1029
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	3 cut(s)	73, 261, 906
FaeI	CATG	5 cut(s)	439, 617, 725, 950, 1097
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	5 cut(s)	435, 613, 721, 946, 1093
FauI	CCCGC	2 cut(s)	493, 576
Fnu4HI	GCNGC	2 cut(s)	190, 204
FokI	GGATG	2 cut(s)	410, 1139
Fsp4HI	GCNGC	2 cut(s)	190, 204
GluI	GCNGC	2 cut(s)	190, 204
HgaI	GACGC	2 cut(s)	276, 783
Hin1I	GRCGYC	1 cut(s)	775
Hin1II	CATG	5 cut(s)	439, 617, 725, 950, 1097
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	2 cut(s)	558, 812
HinfI	GANTC	7 cut(s)	175, 250, 701, 709, 796, 839, 1116
HpaI	GTTAAC	1 cut(s)	282
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	5 cut(s)	475, 580, 706, 876, 1009
Hpy188III	TCNNGA	3 cut(s)	606, 867, 1184
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	5 cut(s)	139, 383, 500, 873, 1014
HpyCH4IV	ACGT	4 cut(s)	19, 385, 468, 915
HpyCH4V	TGCA	8 cut(s)	189, 224, 721, 740, 791, 934, 1024, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 940
HpyF3I	CTNAG	7 cut(s)	252, 311, 343, 579, 705, 1167, 1191
HpySE526I	ACGT	4 cut(s)	19, 385, 468, 915
Hsp92I	GRCGYC	1 cut(s)	775
Hsp92II	CATG	5 cut(s)	439, 617, 725, 950, 1097
KpnI	GGTACC	2 cut(s)	240, 362
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	6 cut(s)	89, 150, 440, 1030, 1133, 1186
LmnI	GCTCC	1 cut(s)	608
Lsp1109I	GCAGC	2 cut(s)	190, 201
LweI	GCATC	2 cut(s)	843, 1045
MaeII	ACGT	4 cut(s)	19, 385, 468, 915
MaeIII	GTNAC	3 cut(s)	209, 631, 829
MalI	GATC	6 cut(s)	91, 152, 442, 1032, 1135, 1188
MbiI	CCGCTC	1 cut(s)	583
MboI	GATC	6 cut(s)	89, 150, 440, 1030, 1133, 1186
MboII	GAAGA	7 cut(s)	97, 154, 256, 437, 440, 542, 621
MflI	RGATCY	2 cut(s)	440, 1186
MhlI	GDGCHC	1 cut(s)	805
MlyI	GAGTC	3 cut(s)	169, 244, 790
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	7 cut(s)	60, 281, 546, 690, 1109, 1155, 1279
MslI	CAYNNNNRTG	1 cut(s)	1098
MspA1I	CMGCKG	2 cut(s)	203, 332
MspR9I	CCNGG	3 cut(s)	75, 263, 908
MvaI	CCWGG	3 cut(s)	75, 263, 908
MwoI	GCNNNNNNNGC	2 cut(s)	50, 940
NdeII	GATC	6 cut(s)	89, 150, 440, 1030, 1133, 1186
NlaIII	CATG	5 cut(s)	439, 617, 725, 950, 1097
NlaIV	GGNNCC	2 cut(s)	238, 360
NmuCI	GTSAC	2 cut(s)	209, 631
PasI	CCCWGGG	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	701, 709, 839, 1116
PflFI	GACNNNGTC	1 cut(s)	1208
PkrI	GCNGC	2 cut(s)	191, 205
PleI	GAGTC	3 cut(s)	169, 244, 790
PpsI	GAGTC	3 cut(s)	169, 244, 790
Psp6I	CCWGG	3 cut(s)	73, 261, 906
PspGI	CCWGG	3 cut(s)	73, 261, 906
PspN4I	GGNNCC	2 cut(s)	238, 360
PspPI	GGNCC	1 cut(s)	753
PstI	CTGCAG	1 cut(s)	1066
PsuI	RGATCY	2 cut(s)	440, 1186
PsyI	GACNNNGTC	1 cut(s)	1208
PvuII	CAGCTG	2 cut(s)	203, 332
RsaI	GTAC	5 cut(s)	238, 360, 371, 455, 922
RsaNI	GTAC	5 cut(s)	237, 359, 370, 454, 921
RseI	CAYNNNNRTG	1 cut(s)	1098
SaqAI	TTAA	7 cut(s)	60, 281, 546, 690, 1109, 1155, 1279
SatI	GCNGC	2 cut(s)	190, 204
Sau3AI	GATC	6 cut(s)	89, 150, 440, 1030, 1133, 1186
Sau96I	GGNCC	1 cut(s)	753
SchI	GAGTC	3 cut(s)	169, 244, 790
ScrFI	CCNGG	3 cut(s)	75, 263, 908
SduI	GDGCHC	1 cut(s)	805
SfaNI	GCATC	2 cut(s)	843, 1045
SfcI	CTRYAG	1 cut(s)	1062
SinI	GGWCC	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SsiI	CCGC	3 cut(s)	389, 500, 583
StyD4I	CCNGG	3 cut(s)	73, 261, 906
TaiI	ACGT	4 cut(s)	22, 388, 471, 918
TaqI	TCGA	7 cut(s)	153, 162, 323, 567, 805, 974, 1136
TatI	WGTACW	1 cut(s)	920
TfiI	GAWTC	4 cut(s)	701, 709, 839, 1116
Tru1I	TTAA	7 cut(s)	60, 281, 546, 690, 1109, 1155, 1279
Tru9I	TTAA	7 cut(s)	60, 281, 546, 690, 1109, 1155, 1279
TscAI	CASTG	1 cut(s)	1126
TseFI	GTSAC	2 cut(s)	209, 631
TseI	GCWGC	2 cut(s)	189, 203
Tsp45I	GTSAC	2 cut(s)	209, 631
TspDTI	ATGAA	9 cut(s)	184, 438, 553, 638, 673, 714, 738, 808, 1242
TspGWI	ACGGA	2 cut(s)	702, 851
TspRI	CASTG	1 cut(s)	1126
Tth111I	GACNNNGTC	1 cut(s)	1208
VpaK11BI	GGWCC	1 cut(s)	753
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	7 cut(s)	168, 228, 725, 882, 1046, 1076, 1267
XmnI	GAANNNNTTC	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.