Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

31527152 .. 31529458

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1245200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGGATGCATAATGCGCCTTTGTTGTCGACAAGATCCTGGAGACTGCATCTAACTGTCAGAAGCAGGGTGCTCCTATGGAAATATAGCAATCCTTTACCGGAGGCAGGAAAAGTCTTCCAGACAGCCTTGCGTGAAACGAAAATACCATTTAATGTTCATGGAGTGGCAGTTTATAGGAAGAAGGTAGTTAGAGCCATTGTTGCTATGATTAAAATGACTTTGCCTGGTTGTGATGATGGATCATATAGGCAAGTCTTCAAGGGTCTACTTCCTTTTGAGAAAGAGGAAAAGAAGAAGGTGATCGATTATATTGACAAAATCTCAACTCACAGAAAATGCAGCTTCATATCAGCCGCTTGTGACATCTTTAGTGCAAAAATTTCTGGTACCTTGAAGAGGACTCAGCTTACCCAAGGACGCAAGGTGCTGTTAACACTAGAGATGATTTCAAAACTTGTTCTCAGGAAGTACCTTCTTGAGCAACGTGCAGTTGTTGATGTAGATGGAGGAAAACTGCTGAATGAAGACAGTGACGTGGGATCTGTAAGAGCCTCAACGATTTCATCTCCCTCTTTGGAAGAATGTCCCAACAGCTTCGACTGGCTCCAGCCCTTTTTAAATCTTTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

212

Amino Acids

23.92

Weight (kDa)

9.81

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	2 cut(s)	29, 268
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	3 cut(s)	30, 250, 550
AcsI	RAATTY	1 cut(s)	381
AfaI	GTAC	2 cut(s)	391, 473
AfiI	CCNNNNNNNGG	2 cut(s)	107, 399
AgsI	TTSAA	3 cut(s)	262, 397, 453
AjiI	CACGTC	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	38, 226
AluBI	AGCT	3 cut(s)	345, 409, 597
AluI	AGCT	3 cut(s)	345, 409, 597
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	3 cut(s)	30, 250, 550
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	381
Asp718I	GGTACC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	389
BbsI	GAAGAC	3 cut(s)	109, 250, 534
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	2 cut(s)	233, 500
BciT130I	CCWGG	2 cut(s)	40, 228
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	2 cut(s)	343, 357
BlsI	GCNGC	2 cut(s)	344, 358
Bme1390I	CCNGG	2 cut(s)	40, 228
BmgBI	CACGTC	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	391, 608
BmrFI	CCNGG	2 cut(s)	40, 228
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	3 cut(s)	109, 250, 534
BpmI	CTGGAG	2 cut(s)	61, 593
BpuEI	CTTGAG	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 399
Bse1I	ACTGG	1 cut(s)	608
BseBI	CCWGG	2 cut(s)	40, 228
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	107, 399
BseMII	CTCAG	2 cut(s)	419, 478
BseNI	ACTGG	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	354
BsgI	GTGCAG	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	2 cut(s)	107, 399
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	35, 242, 303, 542
BspACI	CCGC	1 cut(s)	357
BspCNI	CTCAG	2 cut(s)	418, 477
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	391, 608
BspPI	GGATC	3 cut(s)	30, 250, 550
BspT107I	GGYRCC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	4 cut(s)	35, 242, 303, 542
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	40, 228
Bst4CI	ACNGT	2 cut(s)	58, 533
Bst6I	CTCTTC	1 cut(s)	392
BstDEI	CTNAG	2 cut(s)	405, 464
BstENI	CCTNNNNNAGG	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	4 cut(s)	38, 245, 306, 545
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	4 cut(s)	35, 242, 303, 542
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 203
BstNI	CCWGG	2 cut(s)	40, 228
BstSCI	CCNGG	2 cut(s)	38, 226
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	3 cut(s)	109, 250, 534
BstX2I	RGATCY	2 cut(s)	35, 542
BstYI	RGATCY	2 cut(s)	35, 542
Bsu15I	ATCGAT	1 cut(s)	306
BsuTUI	ATCGAT	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	538
CfoI	GCGC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	390, 472
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	9 cut(s)	128, 197, 345, 356, 409, 554, 597, 607, 613
CviKI_1	RGCY	9 cut(s)	128, 197, 345, 356, 409, 554, 597, 607, 613
CviQI	GTAC	2 cut(s)	390, 472
DdeI	CTNAG	2 cut(s)	405, 464
DpnI	GATC	4 cut(s)	37, 244, 305, 544
DpnII	GATC	4 cut(s)	35, 242, 303, 542
DraI	TTTAAA	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	38, 226
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	1 cut(s)	164
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	1 cut(s)	160
FblI	GTMKAC	2 cut(s)	29, 268
Fnu4HI	GCNGC	2 cut(s)	343, 357
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	343, 357
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	343, 357
GsuI	CTGGAG	2 cut(s)	61, 593
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	2 cut(s)	30, 435
HindII	GTYRAC	2 cut(s)	30, 435
HinfI	GANTC	1 cut(s)	403
HpaI	GTTAAC	1 cut(s)	435
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	3 cut(s)	30, 269, 435
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	3 cut(s)	121, 466, 479
Hpy8I	GTNNAC	3 cut(s)	30, 269, 435
HpyAV	CCTTC	3 cut(s)	178, 292, 485
HpyCH4III	ACNGT	2 cut(s)	58, 533
HpyCH4IV	ACGT	2 cut(s)	487, 537
HpyCH4V	TGCA	5 cut(s)	10, 49, 342, 377, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 203
HpyF3I	CTNAG	2 cut(s)	405, 464
HpySE526I	ACGT	2 cut(s)	487, 537
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	17
KpnI	GGTACC	1 cut(s)	393
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	4 cut(s)	35, 242, 303, 542
LmnI	GCTCC	2 cut(s)	78, 612
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	487, 537
MaeIII	GTNAC	2 cut(s)	362, 533
MalI	GATC	4 cut(s)	37, 244, 305, 544
MboI	GATC	4 cut(s)	35, 242, 303, 542
MboII	GAAGA	7 cut(s)	109, 193, 250, 307, 409, 539, 593
MflI	RGATCY	2 cut(s)	35, 542
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	6 cut(s)	97, 280, 393, 503, 565, 583
Mph1103I	ATGCAT	1 cut(s)	12
MseI	TTAA	5 cut(s)	153, 213, 434, 620, 634
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	40, 228
MvaI	CCWGG	2 cut(s)	40, 228
MwoI	GCNNNNNNNGC	2 cut(s)	16, 203
NdeII	GATC	4 cut(s)	35, 242, 303, 542
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	2 cut(s)	391, 608
NmuCI	GTSAC	2 cut(s)	362, 533
NsiI	ATGCAT	1 cut(s)	12
PfoI	TCCNGGA	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	344, 358
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	38, 226
PspGI	CCWGG	2 cut(s)	38, 226
PspN4I	GGNNCC	2 cut(s)	391, 608
PsuI	RGATCY	2 cut(s)	35, 542
RsaI	GTAC	2 cut(s)	391, 473
RsaNI	GTAC	2 cut(s)	390, 472
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	5 cut(s)	153, 213, 434, 620, 634
SatI	GCNGC	2 cut(s)	343, 357
Sau3AI	GATC	4 cut(s)	35, 242, 303, 542
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	40, 228
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	381
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	38, 226
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	58, 533
TaiI	ACGT	2 cut(s)	490, 540
TaqI	TCGA	3 cut(s)	29, 306, 600
TasI	AATT	1 cut(s)	381
TauI	GCSGC	1 cut(s)	359
Tru1I	TTAA	5 cut(s)	153, 213, 434, 620, 634
Tru9I	TTAA	5 cut(s)	153, 213, 434, 620, 634
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	2 cut(s)	362, 533
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	2 cut(s)	362, 533
TspDTI	ATGAA	4 cut(s)	149, 337, 540, 555
TspRI	CASTG	1 cut(s)	538
XagI	CCTNNNNNAGG	1 cut(s)	397
XapI	RAATTY	1 cut(s)	381
XmiI	GTMKAC	2 cut(s)	29, 268
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.