RLG00000006922

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003601
Physical Location & Seq
Forward (+)
11886025 .. 11886634
610 bp
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UTR
Exon/CDS
Intron
RLM00000006922

Sequence Viewer

Length: 360 bp
ATGGCATTCACGCTTGAAGACGACGACGACCGCCCTCCCTCGACCTCACCACCCTCTCTCTCCGGCCACCAGTTCGACTACCGCGACTGCGCCGTCTCCCTTCTCTCTCTCCTCCGCGACGACGATTTGGCCTTTGCCGAGTCCTGCTCCATTCTCCGACCCAACTCCACCGCTGGTGAGTTGTTTCCAGTCCTCTCTCTCCGGCAAGATTCCGAGGAGCATCGCCAACCTGACTCACCTTCGGCTCGTACAATCAGTTTTCCAGTGGATGCACTGAAGCAAGAACTGGGAGAATTCAATATTTGCGCAGAGAGAGAGAAGAGAAGATCTGAGACAGCAGAGAGTACAGTATTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.31

Weight (kDa)

4.45

Isoelectric Point (pI)

78.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc16I TGCGCA 1 cut(s) 307
AccII CGCG 2 cut(s) 84, 117
AciI CCGC 4 cut(s) 31, 82, 115, 171
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 2 cut(s) 250, 346
AgsI TTSAA 2 cut(s) 17, 298
Alw26I GTCTC 2 cut(s) 100, 326
AoxI GGCC 2 cut(s) 64, 129
ApoI RAATTY 1 cut(s) 293
AspLEI GCGC 2 cut(s) 92, 308
AsuHPI GGTGA 3 cut(s) 39, 188, 228
BbsI GAAGAC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 100, 326
BglII AGATCT 1 cut(s) 326
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 229, 259
BmuI ACTGGG 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BsaJI CCNNGG 1 cut(s) 213
Bse1I ACTGG 4 cut(s) 70, 188, 263, 291
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 4 cut(s) 70, 188, 263, 291
BseRI GAGGAG 2 cut(s) 101, 230
Bsh1236I CGCG 2 cut(s) 84, 117
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 2 cut(s) 66, 131
BsiEI CGRYCG 1 cut(s) 31
BsiSI CCGG 2 cut(s) 63, 202
BsmAI GTCTC 2 cut(s) 100, 326
BsmBI CGTCTC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 2 cut(s) 66, 131
Bsp143I GATC 1 cut(s) 326
BspACI CCGC 4 cut(s) 31, 82, 115, 171
BspANI GGCC 2 cut(s) 66, 131
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 2 cut(s) 84, 117
BsrI ACTGG 4 cut(s) 70, 188, 263, 291
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 2 cut(s) 84, 117
BstHHI GCGC 2 cut(s) 92, 308
BstKTI GATC 1 cut(s) 329
BstMAI GTCTC 2 cut(s) 100, 326
BstMBI GATC 1 cut(s) 326
BstMCI CGRYCG 1 cut(s) 31
BstUI CGCG 2 cut(s) 84, 117
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 2 cut(s) 66, 131
BtgZI GCGATG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 270, 272
CfoI GCGC 2 cut(s) 92, 308
Csp6I GTAC 2 cut(s) 249, 345
CviJI RGCY 3 cut(s) 66, 131, 245
CviKI_1 RGCY 3 cut(s) 66, 131, 245
CviQI GTAC 2 cut(s) 249, 345
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 100
FokI GGATG 1 cut(s) 281
FspI TGCGCA 1 cut(s) 307
GlaI GCGC 2 cut(s) 91, 307
HaeIII GGCC 2 cut(s) 66, 131
HapII CCGG 2 cut(s) 63, 202
HhaI GCGC 2 cut(s) 92, 308
Hin6I GCGC 2 cut(s) 90, 306
HinP1I GCGC 2 cut(s) 90, 306
HinfI GANTC 3 cut(s) 140, 209, 233
HpaII CCGG 2 cut(s) 63, 202
HphI GGTGA 3 cut(s) 39, 188, 228
Hpy188I TCNGA 3 cut(s) 158, 214, 331
Hpy99I CGWCG 4 cut(s) 26, 29, 122, 125
HpyAV CCTTC 2 cut(s) 110, 249
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 330
HspAI GCGC 2 cut(s) 90, 306
Kzo9I GATC 1 cut(s) 326
LmnI GCTCC 2 cut(s) 152, 217
LpnPI CCDG 9 cut(s) 76, 83, 157, 159, 201, 215, 243, 272, 276
LweI GCATC 2 cut(s) 229, 259
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 3 cut(s) 29, 331, 336
MflI RGATCY 1 cut(s) 326
MluCI AATT 1 cut(s) 293
MlyI GAGTC 2 cut(s) 149, 227
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 7 cut(s) 45, 49, 55, 64, 122, 203, 208
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 63, 202
Mva1269I GAATGC 1 cut(s) 5
MvnI CGCG 2 cut(s) 84, 117
NdeII GATC 1 cut(s) 326
NmeAIII GCCGAG 1 cut(s) 163
NsbI TGCGCA 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 209
PleI GAGTC 2 cut(s) 148, 227
PpsI GAGTC 2 cut(s) 148, 227
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 2 cut(s) 250, 346
RsaNI GTAC 2 cut(s) 249, 345
Sau3AI GATC 1 cut(s) 326
SchI GAGTC 2 cut(s) 149, 227
SetI ASST 3 cut(s) 47, 232, 241
SfaNI GCATC 2 cut(s) 229, 259
Sse9I AATT 1 cut(s) 293
SsiI CCGC 4 cut(s) 31, 82, 115, 171
SspI AATATT 1 cut(s) 301
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 2 cut(s) 41, 75
TasI AATT 1 cut(s) 293
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 2 cut(s) 270, 279
TspRI CASTG 2 cut(s) 270, 279
XapI RAATTY 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.