Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

31560767 .. 31567554

Gene Structure 6788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1245700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGATTGTTGGGCGCGTTCTAATGCTGCTCAATGAGGGCATCAGCACGTCGAACATTCTAGCAATGACTTTCACTACAGCAGCAGCTTCCGAGATGAGAGATCGAATTGGATCTGTGACTGGGAAAGCAACGGCAAAACTACTAACAATCAGTACATTGCATTCATTTTCATTGCAACTTTGCCGATCACATGCTGAGAAACTCGAGCGCAGACCAGAATTTTTGATATATGGACATGGGCAACAGAGAAGAGCAATCATTGAAGCTGTGCGGTTATCAGAAGATGAAAAGAGTAAAACGAATCTTAATGTTGCTATAGATGGGGAAGAGTCTAACGGCGTAACATCTCCACATCATTTTAAGGATGCATCAAAGAAATGGCTGAAGTTTGTGACACAGGCAAAAGCTTCTGGAAAGACTCCCGCTGAATGCCGAAGAATGGGTGATGTGACAGGAGGTGAAATTCTTAGGAATTACAATGATATCTTGAAATCGTGCAACGCTTTGGACTACCACGACTTAATTAGCTGCTCTGTGAAGCTGCTAAGTGATTTTCCTGAAGTGTTGAAGGAGTGCCAGGAGTCATGGAAAGCTATTGTAATAGACGAGTTTCAAGACACAAGTGCTATGCAATATAGTCTTTTGCGGATTCTCGCCTCTCATAACCACATAACCATTCTCATTCTAATCCAGCCCTTATCTGTTCTAAATCAAATAACATATATCCTGCTGCAGTCCATTTTCAGTTTCAATGGGGCGGACATTTCTGGATTTGATTCTTTTCGTAAAGATTTTTCAAATTACAAAGAGATTAGGCTTAATAAAAACTTTCGGTCCACACGCTATATTGTGGAAGCTGCATCTTCTGTTATAAAAAACAATAAGAAGCGATGCCAACTAAAGAATGTTGACACGGACAATTCTTCTGGGTCTAAGGTAATTATCAAGGAAAGTCACAATGAGGATGCACAATGTGCCTTTGTTGTCGACAAGATCCTGGAGACTGCATCTAAACGGTCAGAAGCAGGGTGCTTCTATGGAAATATAGCAATCCTTTACCGGAGGCAGGTATCAGGAAAAGTCTTCCAGACAGCCTTGCGTGAAAGGAAAATACCATTTAATGTTCATGGAGTGGCAGTTTATAGGAAGAAGGTAGTTAGAGCCATTGTTGCTATGATTAAAACAACTTTGCCTGGTTGTGATGATGGATCATATAGGCAAGTCTTCAAGGCTCTACTTGCTTTTGAGAAAGAGGAAAAGAAGAAGGTGATCGATTATATTGACAAAATTTCAACTCACAGAAAATGCAGCTTCATATCAGCTGCTTGTGACATCTTTAGTGCAAAAATTTCTGGTACCTTGAAGAGGACTCAGCTTACCCAAGGACGCAAGGTGCTGTTAACACTAGAGATGATTTCAAAACTTGTTCTCAGGGAACAATCGATTTCAGCTGTCATAACCTCAGTTGCGAATATGGTACCACAGAAGTACCGTCTTGAGCAACGTGCAGTCGTTGATATAGAGGGAGGAAAACTGCTGAATGAAGACAATGACGTGAGATCTGTTCTTCAGTACCTACTAGACGACGTATCTGATTTCTTATCAACTCATTTTGTTGCGGGAAAAGGGGAGAGAGAAGTCGTAGCAGAAGAAAAAGGCTGCGTTAATTTACTCAAAGCATTCATCGACTACATATCTGAGCGGGAGAGTGAAAATTTTCACTCCCGAAGACATGACAACCAAAGTTCTGTCACTTTGACTACTATTCATCAGTCAAAAGGTTTAGAGTGGGATATAGTTTTCATAATTAAGGTAAATGAATCTGAGATCCCGTTGTTGCATGAATTCAATGGCGTTGCAAAAGAAAATGGGACCTCCATTGAGGAGGAAAGACGCCTATTATATGTTGCAATGACTCGTGCTCGAAAAAAGCTTTTCATTCTTTATGTTACGATGGATTCCAGTTGGCAGATGCTTCAACCTTCGCGATTTCTGAAAGAAATTCCAAATCATCTACGAGAAGTCCAGGCTGACGTAAGTACAGAAGGCTTGCAATCAAAGCATCATGACCCTTCAAAAGAAACTACTCCGTCAACAGATGATCTCAAACCAAATCTCCTACCTTCTGAAGTTGTTATGGTTCAAAATGATCTCCATCATAGTAAATTTGACGTTGCCTCTGCAGAATTGATGGAATTTGGGGAGGAAAACCATGGAAATGGCTTCTTAAAAAGATTCAGTGTGGATGAGAGATCGATTATCTCGCATGTATTTAATGACTGGGCTAAGAAGCAAGCATTTCAAGATCCTAAGAGATTACTTGACAAGGACGGTTTGCGCTCACTCAAATCTTGCTTGAAAGATGAAGATGCATTTCATTATGCCCAATATGTTTTGAGATGGCAGAAAATATCTGCAGATCAACGCGCTCATTTGATGAGGGAAAAACAGGTTAGGTGTAAGACGGTTCCCTTTGTCAGACTTTGGTTGTTTTCGGTAGCGAACTATTGCTTTGTGTTTGAGAACCATTTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

846

Amino Acids

96.16

Weight (kDa)

8.85

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UvrD-helicase	PF00580	2 - 265	6.2e-45	UvrD/REP helicase N-terminal domain
AAA_19	PF13245	6 - 226	2.6e-07	AAA domain
UvrD_C	PF13361	271 - 650	9e-44	UvrD-like helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	872
Acc36I	ACCTGC	1 cut(s)	1057
Acc65I	GGTACC	2 cut(s)	1355, 1477
AccB1I	GGYRCC	2 cut(s)	1355, 1477
AccBSI	CCGCTC	1 cut(s)	1702
AccI	GTMKAC	1 cut(s)	987
AccII	CGCG	3 cut(s)	15, 1987, 2427
AciI	CCGC	6 cut(s)	271, 423, 646, 758, 1619, 1702
AclWI	GGATC	5 cut(s)	118, 988, 1216, 1822, 2300
AcsI	RAATTY	9 cut(s)	218, 462, 1287, 1347, 1714, 1844, 2001, 2165, 2195
AcuI	CTGAAG	4 cut(s)	404, 579, 1553, 2148
AcyI	GRCGYC	1 cut(s)	1894
AdeI	CACNNNGTG	1 cut(s)	974
AfaI	GTAC	6 cut(s)	154, 1357, 1479, 1490, 1574, 2041
AfiI	CCNNNNNNNGG	3 cut(s)	439, 1066, 1365
AjiI	CACGTC	2 cut(s)	48, 1555
AjnI	CCWGG	4 cut(s)	576, 996, 1192, 2025
Alw21I	GWGCWC	1 cut(s)	1924
Alw26I	GTCTC	1 cut(s)	995
AlwI	GGATC	5 cut(s)	118, 988, 1216, 1822, 2300
Ama87I	CYCGRG	1 cut(s)	203
ApoI	RAATTY	9 cut(s)	218, 462, 1287, 1347, 1714, 1844, 2001, 2165, 2195
Asp700I	GAANNNNTTC	1 cut(s)	1716
Asp718I	GGTACC	2 cut(s)	1355, 1477
AspLEI	GCGC	4 cut(s)	15, 210, 2340, 2429
AspS9I	GGNCC	2 cut(s)	834, 1872
AsuHPI	GGTGA	3 cut(s)	455, 470, 1279
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	834, 1872
BaeI	ACNNNNGTAYC	2 cut(s)	1472, 1505
BanI	GGYRCC	2 cut(s)	1355, 1477
BauI	CACGAG	1 cut(s)	1917
BbsI	GAAGAC	4 cut(s)	1075, 1216, 1551, 1735
Bbv12I	GWGCWC	1 cut(s)	1924
BccI	CCATC	6 cut(s)	314, 1199, 1948, 2163, 2185, 2394
BceAI	ACGGC	2 cut(s)	147, 352
BciT130I	CCWGG	4 cut(s)	578, 998, 1194, 2027
BcoDI	GTCTC	1 cut(s)	995
BfaI	CTAG	3 cut(s)	59, 1406, 1580
BfmI	CTRYAG	5 cut(s)	75, 315, 731, 2181, 2415
BfuAI	ACCTGC	1 cut(s)	1057
BglII	AGATCT	1 cut(s)	1559
Bme1390I	CCNGG	4 cut(s)	578, 998, 1194, 2027
Bme18I	GGWCC	2 cut(s)	834, 1872
BmeT110I	CYCGRG	1 cut(s)	203
BmgBI	CACGTC	2 cut(s)	48, 1555
BmgT120I	GGNCC	2 cut(s)	834, 1872
BmiI	GGNNCC	4 cut(s)	1357, 1479, 1873, 2469
BmrFI	CCNGG	4 cut(s)	578, 998, 1194, 2027
BmrI	ACTGGG	2 cut(s)	129, 2290
BmuI	ACTGGG	2 cut(s)	129, 2290
BpiI	GAAGAC	4 cut(s)	1075, 1216, 1551, 1735
BpmI	CTGGAG	1 cut(s)	1019
BpuEI	CTTGAG	1 cut(s)	1517
Bsa29I	ATCGAT	3 cut(s)	1272, 1442, 2255
BsaBI	GATNNNNATC	1 cut(s)	2154
BsaHI	GRCGYC	1 cut(s)	1894
BsaJI	CCNNGG	2 cut(s)	1381, 2212
BsaWI	WCCGGW	1 cut(s)	1059
BsaXI	ACNNNNNCTCC	4 cut(s)	1122, 1152, 2100, 2130
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 1066, 1365
Bse1I	ACTGG	3 cut(s)	124, 1962, 2285
Bse3DI	GCAATG	4 cut(s)	69, 155, 170, 1917
Bse8I	GATNNNNATC	1 cut(s)	2154
BseBI	CCWGG	4 cut(s)	578, 998, 1194, 2027
BseCI	ATCGAT	3 cut(s)	1272, 1442, 2255
BseDI	CCNNGG	2 cut(s)	1381, 2212
BseGI	GGATG	3 cut(s)	370, 970, 2251
BseJI	GATNNNNATC	1 cut(s)	2154
BseLI	CCNNNNNNNGG	3 cut(s)	439, 1066, 1365
BseMI	GCAATG	4 cut(s)	69, 155, 170, 1917
BseMII	CTCAG	6 cut(s)	186, 1385, 1444, 1476, 1689, 1815
BseNI	ACTGG	3 cut(s)	124, 1962, 2285
BseRI	GAGGAG	1 cut(s)	1898
BsgI	GTGCAG	1 cut(s)	1527
Bsh1236I	CGCG	3 cut(s)	15, 1987, 2427
BshNI	GGYRCC	2 cut(s)	1355, 1477
BshVI	ATCGAT	3 cut(s)	1272, 1442, 2255
BsiHKAI	GWGCWC	1 cut(s)	1924
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	1060
BslFI	GGGAC	1 cut(s)	1885
BslI	CCNNNNNNNGG	3 cut(s)	439, 1066, 1365
BsmAI	GTCTC	1 cut(s)	995
BsmFI	GGGAC	1 cut(s)	1885
BsmI	GAATGC	3 cut(s)	160, 434, 1679
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	1924
Bsp19I	CCATGG	1 cut(s)	2212
Bsp68I	TCGCGA	1 cut(s)	1987
BspACI	CCGC	6 cut(s)	271, 423, 646, 758, 1619, 1702
BspCNI	CTCAG	6 cut(s)	187, 1384, 1443, 1475, 1690, 1816
BspDI	ATCGAT	3 cut(s)	1272, 1442, 2255
BspFNI	CGCG	3 cut(s)	15, 1987, 2427
BspHI	TCATGA	1 cut(s)	2065
BspLI	GGNNCC	4 cut(s)	1357, 1479, 1873, 2469
BspMAI	CTGCAG	3 cut(s)	735, 2185, 2419
BspMI	ACCTGC	1 cut(s)	1057
BspPI	GGATC	5 cut(s)	118, 988, 1216, 1822, 2300
BspQI	GCTCTTC	1 cut(s)	244
BspT107I	GGYRCC	2 cut(s)	1355, 1477
BsrBI	CCGCTC	1 cut(s)	1702
BsrDI	GCAATG	4 cut(s)	69, 155, 170, 1917
BsrI	ACTGG	3 cut(s)	124, 1962, 2285
BssECI	CCNNGG	2 cut(s)	1381, 2212
BssNI	GRCGYC	1 cut(s)	1894
BssSI	CACGAG	1 cut(s)	1917
BssT1I	CCWWGG	2 cut(s)	1381, 2212
Bst2BI	CACGAG	1 cut(s)	1917
Bst2UI	CCWGG	4 cut(s)	578, 998, 1194, 2027
Bst4CI	ACNGT	4 cut(s)	1017, 1493, 2333, 2467
Bst6I	CTCTTC	3 cut(s)	244, 321, 1358
BstACI	GRCGYC	1 cut(s)	1894
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstC8I	GCNNGC	2 cut(s)	2051, 2295
BstDSI	CCRYGG	1 cut(s)	2212
BstENI	CCTNNNNNAGG	1 cut(s)	1363
BstF5I	GGATG	3 cut(s)	370, 970, 2251
BstFNI	CGCG	3 cut(s)	15, 1987, 2427
BstHHI	GCGC	4 cut(s)	15, 210, 2340, 2429
BstMAI	GTCTC	1 cut(s)	995
BstMWI	GCNNNNNNNGC	4 cut(s)	974, 1169, 1238, 2059
BstNI	CCWGG	4 cut(s)	578, 998, 1194, 2027
BstNSI	RCATGY	2 cut(s)	194, 2270
BstSCI	CCNGG	4 cut(s)	576, 996, 1192, 2025
BstSFI	CTRYAG	5 cut(s)	75, 315, 731, 2181, 2415
BstUI	CGCG	3 cut(s)	15, 1987, 2427
BstV2I	GAAGAC	4 cut(s)	1075, 1216, 1551, 1735
BstX2I	RGATCY	5 cut(s)	110, 993, 1559, 1827, 2305
BstXI	CCANNNNNNTGG	1 cut(s)	2219
BstYI	RGATCY	5 cut(s)	110, 993, 1559, 1827, 2305
Bsu15I	ATCGAT	3 cut(s)	1272, 1442, 2255
BsuTUI	ATCGAT	3 cut(s)	1272, 1442, 2255
BtgI	CCRYGG	1 cut(s)	2212
BtgZI	GCGATG	1 cut(s)	904
BtrI	CACGTC	2 cut(s)	48, 1555
BtsCI	GGATG	3 cut(s)	370, 970, 2251
BtsIMutI	CAGTG	1 cut(s)	2245
BtuMI	TCGCGA	1 cut(s)	1987
BveI	ACCTGC	1 cut(s)	1057
Cac8I	GCNNGC	2 cut(s)	2051, 2295
CciI	TCATGA	1 cut(s)	2065
CfoI	GCGC	4 cut(s)	15, 210, 2340, 2429
Cfr13I	GGNCC	2 cut(s)	834, 1872
ClaI	ATCGAT	3 cut(s)	1272, 1442, 2255
CseI	GACGC	2 cut(s)	1395, 1902
Csp6I	GTAC	6 cut(s)	153, 1356, 1478, 1489, 1573, 2040
CviAII	CATG	9 cut(s)	191, 236, 585, 1127, 1733, 1841, 2066, 2213, 2267
CviQI	GTAC	6 cut(s)	153, 1356, 1478, 1489, 1573, 2040
DraIII	CACNNNGTG	1 cut(s)	974
Eam1104I	CTCTTC	3 cut(s)	244, 321, 1358
EarI	CTCTTC	3 cut(s)	244, 321, 1358
EciI	GGCGGA	1 cut(s)	773
Eco130I	CCWWGG	2 cut(s)	1381, 2212
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	834, 1872
Eco57I	CTGAAG	4 cut(s)	404, 579, 1553, 2148
Eco88I	CYCGRG	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	1363
EcoO109I	RGGNCCY	1 cut(s)	1872
EcoRI	GAATTC	1 cut(s)	1844
EcoRII	CCWGG	4 cut(s)	576, 996, 1192, 2025
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	1381, 2212
EcoT22I	ATGCAT	2 cut(s)	370, 2374
ErhI	CCWWGG	2 cut(s)	1381, 2212
FaeI	CATG	9 cut(s)	194, 239, 588, 1130, 1736, 1844, 2069, 2216, 2270
FaqI	GGGAC	1 cut(s)	1885
FatI	CATG	9 cut(s)	190, 235, 584, 1126, 1732, 1840, 2065, 2212, 2266
FauI	CCCGC	3 cut(s)	430, 1612, 1695
FblI	GTMKAC	1 cut(s)	987
FokI	GGATG	3 cut(s)	377, 977, 2258
FspBI	CTAG	3 cut(s)	59, 1406, 1580
GlaI	GCGC	4 cut(s)	14, 209, 2339, 2428
GsuI	CTGGAG	1 cut(s)	1019
HapII	CCGG	1 cut(s)	1060
HgaI	GACGC	2 cut(s)	1395, 1902
HhaI	GCGC	4 cut(s)	15, 210, 2340, 2429
Hin1I	GRCGYC	1 cut(s)	1894
Hin1II	CATG	9 cut(s)	194, 239, 588, 1130, 1736, 1844, 2069, 2216, 2270
Hin6I	GCGC	4 cut(s)	13, 208, 2338, 2427
HinP1I	GCGC	4 cut(s)	13, 208, 2338, 2427
HincII	GTYRAC	4 cut(s)	910, 988, 1401, 2094
HindII	GTYRAC	4 cut(s)	910, 988, 1401, 2094
HindIII	AAGCTT	2 cut(s)	405, 1931
HpaI	GTTAAC	1 cut(s)	1401
HpaII	CCGG	1 cut(s)	1060
HphI	GGTGA	3 cut(s)	455, 470, 1279
Hpy166II	GTNNAC	5 cut(s)	837, 910, 988, 1401, 2094
Hpy188I	TCNGA	9 cut(s)	91, 280, 1021, 1594, 1699, 1825, 1995, 2128, 2480
Hpy8I	GTNNAC	5 cut(s)	837, 910, 988, 1401, 2094
Hpy99I	CGWCG	2 cut(s)	52, 1589
HpyAV	CCTTC	7 cut(s)	562, 1144, 1258, 1992, 2039, 2082, 2133
HpyCH4III	ACNGT	4 cut(s)	1017, 1493, 2333, 2467
HpyCH4IV	ACGT	6 cut(s)	47, 1504, 1554, 1587, 2034, 2172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	974, 1169, 1238, 2059
HpySE526I	ACGT	6 cut(s)	47, 1504, 1554, 1587, 2034, 2172
Hsp92I	GRCGYC	1 cut(s)	1894
Hsp92II	CATG	9 cut(s)	194, 239, 588, 1130, 1736, 1844, 2069, 2216, 2270
HspAI	GCGC	4 cut(s)	13, 208, 2338, 2427
KpnI	GGTACC	2 cut(s)	1359, 1481
KspAI	GTTAAC	1 cut(s)	1401
LguI	GCTCTTC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	59, 1406, 1580
MaeII	ACGT	6 cut(s)	47, 1504, 1554, 1587, 2034, 2172
MaeIII	GTNAC	8 cut(s)	115, 340, 391, 448, 953, 1328, 1750, 1948
MbiI	CCGCTC	1 cut(s)	1702
MflI	RGATCY	5 cut(s)	110, 993, 1559, 1827, 2305
MhlI	GDGCHC	1 cut(s)	1924
MlyI	GAGTC	5 cut(s)	338, 412, 590, 1363, 1909
Mph1103I	ATGCAT	2 cut(s)	370, 2374
MroXI	GAANNNNTTC	1 cut(s)	1716
MslI	CAYNNNNRTG	1 cut(s)	2217
MspA1I	CMGCKG	3 cut(s)	425, 1322, 1451
MspI	CCGG	1 cut(s)	1060
MspR9I	CCNGG	4 cut(s)	578, 998, 1194, 2027
Mva1269I	GAATGC	3 cut(s)	160, 434, 1679
MvaI	CCWGG	4 cut(s)	578, 998, 1194, 2027
MvnI	CGCG	3 cut(s)	15, 1987, 2427
MwoI	GCNNNNNNNGC	4 cut(s)	974, 1169, 1238, 2059
NcoI	CCATGG	1 cut(s)	2212
NlaIII	CATG	9 cut(s)	194, 239, 588, 1130, 1736, 1844, 2069, 2216, 2270
NlaIV	GGNNCC	4 cut(s)	1357, 1479, 1873, 2469
NmuCI	GTSAC	6 cut(s)	115, 391, 448, 953, 1328, 1750
NruI	TCGCGA	1 cut(s)	1987
NsiI	ATGCAT	2 cut(s)	370, 2374
NspI	RCATGY	2 cut(s)	194, 2270
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	2065
PciSI	GCTCTTC	1 cut(s)	244
PctI	GAATGC	3 cut(s)	160, 434, 1679
PdmI	GAANNNNTTC	1 cut(s)	1716
PfeI	GAWTC	6 cut(s)	301, 649, 776, 1820, 1958, 2235
PfoI	TCCNGGA	1 cut(s)	996
PleI	GAGTC	5 cut(s)	337, 412, 589, 1363, 1909
PpsI	GAGTC	5 cut(s)	337, 412, 589, 1363, 1909
PpuMI	RGGWCCY	1 cut(s)	1872
PsiI	TTATAA	1 cut(s)	872
Psp5II	RGGWCCY	1 cut(s)	1872
Psp6I	CCWGG	4 cut(s)	576, 996, 1192, 2025
PspGI	CCWGG	4 cut(s)	576, 996, 1192, 2025
PspN4I	GGNNCC	4 cut(s)	1357, 1479, 1873, 2469
PspPI	GGNCC	2 cut(s)	834, 1872
PspPPI	RGGWCCY	1 cut(s)	1872
PspXI	VCTCGAGB	1 cut(s)	203
PstI	CTGCAG	3 cut(s)	735, 2185, 2419
PsuI	RGATCY	5 cut(s)	110, 993, 1559, 1827, 2305
PvuII	CAGCTG	2 cut(s)	1322, 1451
RruI	TCGCGA	1 cut(s)	1987
RsaI	GTAC	6 cut(s)	154, 1357, 1479, 1490, 1574, 2041
RsaNI	GTAC	6 cut(s)	153, 1356, 1478, 1489, 1573, 2040
RseI	CAYNNNNRTG	1 cut(s)	2217
SalI	GTCGAC	1 cut(s)	986
SapI	GCTCTTC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	834, 1872
SchI	GAGTC	5 cut(s)	338, 412, 590, 1363, 1909
ScrFI	CCNGG	4 cut(s)	578, 998, 1194, 2027
SduI	GDGCHC	1 cut(s)	1924
SfcI	CTRYAG	5 cut(s)	75, 315, 731, 2181, 2415
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	834, 1872
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	2217
SmlI	CTYRAG	2 cut(s)	203, 1496
SmoI	CTYRAG	2 cut(s)	203, 1496
SsiI	CCGC	6 cut(s)	271, 423, 646, 758, 1619, 1702
SspMI	CTAG	3 cut(s)	59, 1406, 1580
StyD4I	CCNGG	4 cut(s)	576, 996, 1192, 2025
StyI	CCWWGG	2 cut(s)	1381, 2212
TaaI	ACNGT	4 cut(s)	1017, 1493, 2333, 2467
TaiI	ACGT	6 cut(s)	50, 1507, 1557, 1590, 2037, 2175
TaqI	TCGA	9 cut(s)	50, 103, 204, 987, 1272, 1442, 1686, 1924, 2255
TaqII	GACCGA	1 cut(s)	822
TatI	WGTACW	2 cut(s)	152, 2039
TfiI	GAWTC	6 cut(s)	301, 649, 776, 1820, 1958, 2235
TscAI	CASTG	1 cut(s)	2245
TseFI	GTSAC	6 cut(s)	115, 391, 448, 953, 1328, 1750
Tsp45I	GTSAC	6 cut(s)	115, 391, 448, 953, 1328, 1750
TspGWI	ACGGA	2 cut(s)	929, 2079
TspRI	CASTG	1 cut(s)	2245
VpaK11BI	GGWCC	2 cut(s)	834, 1872
XagI	CCTNNNNNAGG	1 cut(s)	1363
XapI	RAATTY	9 cut(s)	218, 462, 1287, 1347, 1714, 1844, 2001, 2165, 2195
XceI	RCATGY	2 cut(s)	194, 2270
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	987
XmnI	GAANNNNTTC	1 cut(s)	1716
XspI	CTAG	3 cut(s)	59, 1406, 1580
Zsp2I	ATGCAT	2 cut(s)	370, 2374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.