Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Forward (+)

18351342 .. 18354257

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001620

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCATTCACGCTTGAAGACGACGACGACCGCCCTCCCTCGACCTCACCGCCCTCTCTCTCCGGCCACCAGTTCGACTACCGTGACTGCGCCGTCTCCCTTCTCTCTCTCCTCCGCTCTCTCTCTCTCTCCTCCGCGACGACGATTTGGCCTTTGCCGAGTCCTGCTCCATTCTCCGGCCCAACTCCACCGCTGTTTTCCGGTTGGGTTCCTGCAAGCTTCAACGCTGGACCACAACCTGTTGGAATGTACACTGCCGTCGGCTATAGCCAATTGCGCCGGCGCTGGCCCGATTCAAGCAGTTGCGCAAGGTGGACACAAGCCCTGTGTTCAGGCTTTCGGGGAGATCAGTTTGATGGACAAGATCCAGAGGAGTGCAAAGTGAAAAGCTCATTCTTCAATTGGTGTGGAACTAGAACATACCGGTATAGCATCAAAGGGGAGGAGGAAAGCCCATTTGTGAGAATCGGCAATGTTTTTGTTGCTGCATTAAGGAACTGGCGAACTAGTCCTTCAGCAATAGCTTCTGAAGAGGAATCCCGTGGAACCTTGCCTGATCAAAGTTCTGAACAATTCAAGTTAGCATCTTATCTGCATAGCTTTAGATTAAAGAGAATGGGGAGTAAAATAGGAGAAAGATTCAATAAAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

219

Amino Acids

24.32

Weight (kDa)

8.63

Isoelectric Point (pI)

71.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	1 cut(s)	137
AciI	CCGC	5 cut(s)	31, 50, 115, 135, 191
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	498, 549
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	423
AgsI	TTSAA	6 cut(s)	17, 223, 297, 400, 577, 643
AhlI	ACTAGT	1 cut(s)	506
AluBI	AGCT	4 cut(s)	219, 390, 524, 600
AluI	AGCT	4 cut(s)	219, 390, 524, 600
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	4 cut(s)	64, 149, 178, 287
ApeKI	GCWGC	1 cut(s)	485
AsiGI	ACCGGT	1 cut(s)	423
AspLEI	GCGC	4 cut(s)	92, 279, 285, 308
AspS9I	GGNCC	3 cut(s)	179, 230, 288
AsuHPI	GGTGA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	2 cut(s)	77, 242
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	2 cut(s)	414, 507
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	179, 230, 288
BmiI	GGNNCC	2 cut(s)	210, 547
BmsI	GCATC	2 cut(s)	441, 593
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BsaJI	CCNNGG	1 cut(s)	541
BsaWI	WCCGGW	2 cut(s)	200, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	2 cut(s)	279, 423
Bse1I	ACTGG	2 cut(s)	70, 503
Bse3DI	GCAATG	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	478
BseNI	ACTGG	2 cut(s)	70, 503
BseRI	GAGGAG	4 cut(s)	101, 121, 386, 458
BseXI	GCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	66, 151, 180, 289
BshTI	ACCGGT	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	5 cut(s)	63, 177, 201, 280, 424
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	4 cut(s)	66, 151, 180, 289
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	346, 364, 556
BspACI	CCGC	5 cut(s)	31, 50, 115, 135, 191
BspANI	GGCC	4 cut(s)	66, 151, 180, 289
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	210, 547
BspPI	GGATC	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	478
BsrFI	RCCGGY	2 cut(s)	279, 423
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	70, 503
BssAI	RCCGGY	2 cut(s)	279, 423
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	3 cut(s)	346, 364, 556
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	525
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	217, 281, 287
BstDSI	CCRYGG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	4 cut(s)	92, 279, 285, 308
BstKTI	GATC	3 cut(s)	349, 367, 559
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	3 cut(s)	346, 364, 556
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	4 cut(s)	66, 151, 180, 289
BtgI	CCRYGG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	217, 281, 287
CfoI	GCGC	4 cut(s)	92, 279, 285, 308
Cfr10I	RCCGGY	2 cut(s)	279, 423
Cfr13I	GGNCC	3 cut(s)	179, 230, 288
Csp6I	GTAC	1 cut(s)	250
CspAI	ACCGGT	1 cut(s)	423
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviQI	GTAC	1 cut(s)	250
DpnI	GATC	3 cut(s)	348, 366, 558
DpnII	GATC	3 cut(s)	346, 364, 556
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	498, 549
Esp3I	CGTCTC	1 cut(s)	100
FaiI	YATR	4 cut(s)	267, 421, 429, 597
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	1 cut(s)	486
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	414, 507
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	4 cut(s)	91, 278, 284, 307
GluI	GCNGC	1 cut(s)	486
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	4 cut(s)	66, 151, 180, 289
HapII	CCGG	5 cut(s)	63, 177, 201, 280, 424
HhaI	GCGC	4 cut(s)	92, 279, 285, 308
Hin6I	GCGC	4 cut(s)	90, 277, 283, 306
HinP1I	GCGC	4 cut(s)	90, 277, 283, 306
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	5 cut(s)	160, 293, 465, 536, 639
HpaII	CCGG	5 cut(s)	63, 177, 201, 280, 424
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	252, 315
Hpy188I	TCNGA	2 cut(s)	529, 568
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	2 cut(s)	252, 315
Hpy99I	CGWCG	5 cut(s)	26, 29, 142, 145, 263
HpyAV	CCTTC	2 cut(s)	110, 522
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	215, 378, 488, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HspAI	GCGC	4 cut(s)	90, 277, 283, 306
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	346, 364, 556
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	2 cut(s)	441, 593
MaeI	CTAG	2 cut(s)	414, 507
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	3 cut(s)	348, 366, 558
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	3 cut(s)	346, 364, 556
MboII	GAAGA	3 cut(s)	29, 388, 542
MfeI	CAATTG	2 cut(s)	272, 400
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	3 cut(s)	272, 400, 572
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	223
MreI	CGCCGGCG	1 cut(s)	279
MroNI	GCCGGC	1 cut(s)	279
MseI	TTAA	2 cut(s)	491, 608
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	5 cut(s)	63, 177, 201, 280, 424
MunI	CAATTG	2 cut(s)	272, 400
Mva1269I	GAATGC	1 cut(s)	5
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	276
NaeI	GCCGGC	1 cut(s)	281
NdeII	GATC	3 cut(s)	346, 364, 556
NgoMIV	GCCGGC	1 cut(s)	279
NlaIV	GGNNCC	2 cut(s)	210, 547
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	307
PctI	GAATGC	1 cut(s)	5
PdiI	GCCGGC	1 cut(s)	281
PfeI	GAWTC	4 cut(s)	293, 465, 536, 639
PinAI	ACCGGT	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	210, 547
PspPI	GGNCC	3 cut(s)	179, 230, 288
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	491, 608
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	3 cut(s)	346, 364, 556
Sau96I	GGNCC	3 cut(s)	179, 230, 288
SchI	GAGTC	1 cut(s)	169
SetI	ASST	8 cut(s)	47, 221, 241, 314, 392, 526, 551, 602
SfaNI	GCATC	2 cut(s)	441, 593
SfcI	CTRYAG	1 cut(s)	265
SgrAI	CRCCGGYG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	230
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	3 cut(s)	272, 400, 572
SsiI	CCGC	5 cut(s)	31, 50, 115, 135, 191
SspMI	CTAG	2 cut(s)	414, 507
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	41, 75
TasI	AATT	3 cut(s)	272, 400, 572
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	4 cut(s)	293, 465, 536, 639
Tru1I	TTAA	2 cut(s)	491, 608
Tru9I	TTAA	2 cut(s)	491, 608
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	83
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	230
XspI	CTAG	2 cut(s)	414, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.