Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

31425206 .. 31426102

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1244100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAGGTATCAGGAAAAGTCTTCCAGACAGCCTTGCGTGAAAGGAAAATACCATTTAATGTTCATGGAGTGGCAGTTTATAGGAAGAAGATTTTGCTACATTACGTTAGTTAGAGCCATTGTTGCTATGATTAAAACAACTTTGCCTGGTTGTGATGATGGATCATATAGGCAAGTCTTCAAGGCTCTACTTGCTTTTGAGAAAGAGGAAAAGAAGAAGGTGATCGATTATATTGACAAAATTTCAACTCACAGAAAATGCAGCTTCATATCAGCTGCTTGTGACATCTTTAGTGCAAAAATTTCTGGTACCTTGAAGAGGTCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

110

Amino Acids

12.69

Weight (kDa)

9.68

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	240, 300
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	181, 246, 316
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	264, 275
AluI	AGCT	2 cut(s)	264, 275
AlwI	GGATC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	261, 275
ApoI	RAATTY	2 cut(s)	240, 300
Asp718I	GGTACC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	308
BbsI	GAAGAC	2 cut(s)	12, 169
BbvI	GCAGC	2 cut(s)	262, 273
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	262, 276
BlsI	GCNGC	2 cut(s)	263, 277
Bme1390I	CCNGG	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	12, 169
Bsa29I	ATCGAT	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	262, 273
BshNI	GGYRCC	1 cut(s)	308
BshVI	ATCGAT	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	161, 222
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	308
BssMI	GATC	2 cut(s)	161, 222
Bst2UI	CCWGG	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	311
BstENI	CCTNNNNNAGG	1 cut(s)	316
BstKTI	GATC	2 cut(s)	164, 225
BstMBI	GATC	2 cut(s)	161, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 191
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	2 cut(s)	262, 273
BstV2I	GAAGAC	2 cut(s)	12, 169
Bsu15I	ATCGAT	1 cut(s)	225
BsuTUI	ATCGAT	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	5 cut(s)	31, 116, 185, 264, 275
CviKI_1	RGCY	5 cut(s)	31, 116, 185, 264, 275
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	2 cut(s)	163, 224
DpnII	GATC	2 cut(s)	161, 222
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	145
FaeI	CATG	1 cut(s)	67
FaiI	YATR	8 cut(s)	65, 80, 128, 166, 168, 231, 269, 328
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	262, 276
Fsp4HI	GCNGC	2 cut(s)	262, 276
GluI	GCNGC	2 cut(s)	262, 276
Hin1II	CATG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	11, 24
HpyAV	CCTTC	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	261, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 191
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	67
KpnI	GGTACC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	161, 222
LpnPI	CCDG	4 cut(s)	37, 132, 159, 291
Lsp1109I	GCAGC	2 cut(s)	262, 273
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	163, 224
MboI	GATC	2 cut(s)	161, 222
MboII	GAAGA	6 cut(s)	12, 96, 99, 169, 226, 328
MluCI	AATT	2 cut(s)	240, 300
MnlI	CCTC	2 cut(s)	199, 312
MseI	TTAA	2 cut(s)	56, 132
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	122, 191
NdeII	GATC	2 cut(s)	161, 222
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	263, 277
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	56, 132
SatI	GCNGC	2 cut(s)	262, 276
Sau3AI	GATC	2 cut(s)	161, 222
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	7 cut(s)	8, 107, 222, 266, 277, 314, 323
Sse9I	AATT	2 cut(s)	240, 300
StyD4I	CCNGG	1 cut(s)	145
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	240, 300
Tru1I	TTAA	2 cut(s)	56, 132
Tru9I	TTAA	2 cut(s)	56, 132
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	261, 275
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	52, 256
XagI	CCTNNNNNAGG	1 cut(s)	316
XapI	RAATTY	2 cut(s)	240, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.