Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Forward (+)

3822321 .. 3822841

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGGCGATGGCATCCACGCTTGAAGACGACGACGCCGCCCTCCCTCGACCTCACTGCCCGCTCTCTCCGGCCACTAGTTCGACTACCACAACGCCGCCGTCTCCCTTCTCTCTCTCCTCCGTACTCTCTCTCCCCCCCTCCACGACGGCGATCTGGCCTTTGCCGTTTCTAGTTCGTTTCCAGTCCCTCAGCATCGCCTCAAAGCCATTAACGGCCACCTCATTTATGAGGCCGAGTCCTGCTCCATTTTCAGGCCCAACACCACCGCTGGCGAGTTTGTTTCCAGTCCTCTCTCTCCGGCGAGATCCAGAGGAGCATCGCCAACCTGACTCACCTTCAGCACATACAATCAATTTTCCGATCAGGTTCCGGCGAGCTTCGGCGCTGGACCACAACCTGTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.65

Weight (kDa)

6.9

Isoelectric Point (pI)

77.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	5 cut(s)	5, 39, 62, 98, 269
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	2 cut(s)	72, 216
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	26
AhlI	ACTAGT	1 cut(s)	77
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	5 cut(s)	72, 158, 216, 233, 256
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	257, 391
AsuHPI	GGTGA	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	4 cut(s)	85, 151, 165, 231
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BcoDI	GTCTC	1 cut(s)	108
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	2 cut(s)	78, 173
BfoI	RGCGCY	1 cut(s)	389
BisI	GCNGC	3 cut(s)	6, 39, 98
BlsI	GCNGC	3 cut(s)	7, 40, 99
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	257, 391
BmiI	GGNNCC	1 cut(s)	371
BmsI	GCATC	3 cut(s)	23, 204, 328
BpiI	GAAGAC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
Bpu10I	CCTNAGC	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	184, 287
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	184, 287
BseRI	GAGGAG	2 cut(s)	109, 329
BshFI	GGCC	5 cut(s)	74, 160, 218, 235, 258
BsiSI	CCGG	3 cut(s)	71, 301, 373
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	5 cut(s)	74, 160, 218, 235, 258
Bsp143I	GATC	3 cut(s)	153, 307, 363
BspACI	CCGC	5 cut(s)	5, 39, 62, 98, 269
BspANI	GGCC	5 cut(s)	74, 160, 218, 235, 258
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	184, 287
BssMI	GATC	3 cut(s)	153, 307, 363
BssNI	GRCGYC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	62, 273, 378
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	3 cut(s)	156, 310, 366
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	153, 307, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	5 cut(s)	74, 160, 218, 235, 258
BtgZI	GCGATG	3 cut(s)	23, 181, 305
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	62, 273, 378
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	257, 391
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	125
CviJI	RGCY	7 cut(s)	74, 160, 208, 218, 235, 258, 380
CviKI_1	RGCY	7 cut(s)	74, 160, 208, 218, 235, 258, 380
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	155, 309, 365
DpnII	GATC	3 cut(s)	153, 307, 363
EaeI	YGGCCR	2 cut(s)	72, 216
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	108
FaiI	YATR	2 cut(s)	230, 348
FaqI	GGGAC	1 cut(s)	172
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	6, 39, 98
Fsp4HI	GCNGC	3 cut(s)	6, 39, 98
FspBI	CTAG	2 cut(s)	78, 173
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	3 cut(s)	6, 39, 98
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	5 cut(s)	74, 160, 218, 235, 258
HapII	CCGG	3 cut(s)	71, 301, 373
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	2 cut(s)	238, 332
HpaII	CCGG	3 cut(s)	71, 301, 373
HphI	GGTGA	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	1 cut(s)	311
Hpy99I	CGWCG	3 cut(s)	35, 38, 151
HpyAV	CCTTC	2 cut(s)	118, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	153, 307, 363
LmnI	GCTCC	2 cut(s)	250, 316
LweI	GCATC	3 cut(s)	23, 204, 328
MaeI	CTAG	2 cut(s)	78, 173
MalI	GATC	3 cut(s)	155, 309, 365
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	3 cut(s)	153, 307, 363
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	2 cut(s)	247, 326
MmeI	TCCRAC	1 cut(s)	384
MseI	TTAA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	3 cut(s)	71, 301, 373
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	153, 307, 363
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	7, 40, 99
PleI	GAGTC	2 cut(s)	246, 326
PpsI	GAGTC	2 cut(s)	246, 326
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	2 cut(s)	257, 391
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	3 cut(s)	6, 39, 98
Sau3AI	GATC	3 cut(s)	153, 307, 363
Sau96I	GGNCC	2 cut(s)	257, 391
SchI	GAGTC	2 cut(s)	247, 326
SetI	ASST	7 cut(s)	55, 224, 331, 340, 371, 382, 402
SfaNI	GCATC	3 cut(s)	23, 204, 328
SinI	GGWCC	1 cut(s)	391
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	5 cut(s)	5, 39, 62, 98, 269
SspMI	CTAG	2 cut(s)	78, 173
TaqI	TCGA	2 cut(s)	49, 83
TasI	AATT	1 cut(s)	355
TauI	GCSGC	3 cut(s)	8, 41, 100
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	391
XspI	CTAG	2 cut(s)	78, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.