Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

31458239 .. 31466141

Gene Structure 7903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1244800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3183 bp

ATGTCCAAGGAAAACGTTCAGGCGTACGGCGGAGGGCTCACGGCGGAACAAAGAAACCGCATCTCTCGGAATTGCAGAGCCGCCAAGGCCCTCATTGATCGCAAACGCCCCCGCAACGACGCCGTTTCACCTGATCATCACCTCCCTCATACCAAAATCTGTGGCGGAAATGGAATCCAAACGCCAACTCAGCTCAATAGAGTTCAAAGAACACCGCCTCCGATTTCCGCAAGCCGGTACAATTCAGCGCGTGGTGAATATGGCAGTGCTTCGTGTTCCGGGAGCTTAAGCGTTAGCCGGACCGAATCAAGCGTGTCAAAATCGGATTCTTTCACAACTCCAATCAGACAACCGCAGTTTCTGACTTCATTTGATTCTTTCTCTGCATCTGGAATTCTTAACGATGATGATTTCGATGAGAGTATTTTGCAGGAAATTGACGCTTTAATCGAGCAGAAAACGAGTGTGGACATTCAGCGTGATGATATTGGGAGTTGTGGTAGTGTCGTTAGTGCCGCATCAGCGCCGCCTTTGAGTAGTGAAAACCAAACAGATTCTGTTAACCATGGATTGCCTAACATGCCGGATGAGTATTTGAAGTATTTGCTTTCTCTCAACGAAAGGCAGCTCGAGGCAGCTTGCAGCGATAGTTCAGTACCTTTGATGATTGTTGCCGGCCCTGGAAGTGGAAAGACTTCAACGATAGTTGGGCGCGTTCTAATGCTGCTCAATGAGGGCATTAGCACGTCGAACGTTCTAGCAATGACTTTCACTACAGCAGCAGCTTCCGAGATGAGAGATCGAATTGGATCTGTGACTGGGAAAGCAACGGCAAAACTACTAACAATCAGTACATTTCATTCATTTTCATTGCAACTTTGCCGATCACATGCTGAGAAACTCGAGCGCAGACCAGAATTTTTGATATATGGACATGGGCAACAGAGAAGAGCAATCATTGAAGCTGTGCGTTTATCAGAAGATGAAAAGAGTAAAACGAATCTTAATGTTGCTATAGATGGGGAAGAGTCTAACGGCGTAACATCTCCACATCATTTTAAGGATGCATCAAAGAAATGGCTGAAGTTTGTGACACAGGCAAAAGCTTCTGGAAAGACTCCCGCTGAATGCCGAAGAATGGGTGATGTGACAGGAGGTGAAATTCTTAGGAATTACAATGATATCTTGAAATCGTGCAACGCTTTGGACTACCACGACTTAATTAGCTGCTCTGTGAAGCTGCTAAGTGATTTTCCTGAAGTGTTGAAGGAGTGCCAGGAGTCATGGAAAGCTATTGTAATAGACGAGTTTCAAGACACAAGTGCTATGCAATATAGTCTTTTGCGGATTCTCGCCTCTCATAACCACATAACCATTGTTGGTGATGATGATCAGTCCATTTTCAGTTTCAATGGGGCGGACATTTCTGGATTTGATTCTTTTCGTAAAGATTTTTCAAATAACAAAGAGATTAGGCTTAATAAAAACTTTCGGTCCACACGCTATATTGTGGAAGCTGCATCTTCTGTTATAAAAAACAATAAGAAGCGATGCCAACTAAAGAATGTTGACACGGACAATTCTTCTGGGTCTAAGGTAATTATCAAGGAAAGTCACAATGAGGATGCACAATGCGCCTTTGTTGTCGACAAGATCCTGGAGACTGCATCTAAACGGTCAGAAGCAGGGTGCTCCTATGGAAATATAGCAATCCTTTACCGGAGGCAGGTATCAGGAAAAGTCTTCCAGACAGCCTTGCGTGAAAGGAAAATACCATTTAATGTTCATGGAGTGGCAGTTTATAGGAAGAAGGTAGTTAGAGCCATTGTTGCTATGATTAAAACAACTTTGCCTGGTTGTGATGATGGATCATATAGGCGAGTCTTCAAGGCTCTACTTGCTTTTGAGAAAGAGGAAAAGAAGAAGGTGATTGATTATATTGACAAAATTTCAACTCACAGAAAATGCAGCTTCATATCAGCTGCTTGTGACATCTTTAGTGCCAAAATTTCTGGTACCTTGAAGAGGACTCAGCTTACCCAAGGACGCAAGGTGCTGTTAACACTAGAGATGATTTCAAAACTTGTTCTCAGGGAACAATCGATTTCAGCTGTCATAACCTCAGTTGCGAATATGGTACCACAGAAGTACCTTCTTGAGCAACGTGCAGTCGTTGATGTAGATGGAGGAAAACTGCTGAATGAAGACAATGACGTGAGATCTGTTCTTCAGTACCTACTAGACGACGTATCTGATTTCTTATCAACTCATTTTGTTGCGGGAAAAGGGGAGAGAGAAGTCGTAGCAGAAGAAAAAGGCTGCGTTAATTTACTCAAAGCTTTCATCGACTACATATCTGAGCGGGAGAGTGAAAATTTTCACTCCCGAAGACATGACAACCAAAGTTCTGTCACTTTGACTACTATTCATCAGTCAAAAGGTTTAGAGTGGGATATAGTTTTCATAATTAAGGTAAATGAATCTGAGATTCCGTTGTTGCATGAATTCAATGGCGTTGCAAAAGAAAATGGGACCTCCATTGAGGAGGAAAGACGCCTATTATATGTTGCAATGACTCGTGCTCGAAAAAAGCTTTTCATTCTTTATGTTACGATGGATTCCAGTTGGCAGATGCTTCAACCTTCGCGATTTCTGAAAGAAATTCCAAATCATCTACGAGAAGTCCAGGCTGACGTAAGTACAGAAGGCTTGCAATCAAAGCATCATGACACTTCAAAAGAAACTACTCCGTCAACAGATGATCTCAAACCAAATCTCCTACCTTCTGAAGTTGTTATGGTGCAAAATGATCTCCATCATAGTAAATTTGACGTTGCCTCTGCAGAATTGATGGAATTTGGGGAGGAAAACCATGGAAATGGCTTCTTAAAAAGATTCAGTGTGGATGAGAGATCGATTATCTCGCATGTATTTAATGACTGGGCTAAGAAGCAAGCATTTCAAGATCCTAAGAGATTACTTGACAAGGTTTTGAGATGGCAGAAAATACCTGCAGATCAACGCGCTCATTTGATGAGGGAAAAACAGGTTAGGTGTAAGACGGTTCCCTTTGTCAGACTTTGGTTGTTTTCGATTTCTTATCTGCAAAGTTTGGGCTGCACCGTGGCTCCTACGTCGCGCCTCCATGCGTCTCGTTTGATCGAGCAGTACAAGTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

1061

Amino Acids

118.66

Weight (kDa)

8.6

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UvrD-helicase	PF00580	205 - 485	3.3e-67	UvrD/REP helicase N-terminal domain
AAA_19	PF13245	218 - 470	6.9e-22	AAA domain
UvrD_C	PF13361	491 - 870	2.3e-44	UvrD-like helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1532
Acc36I	ACCTGC	2 cut(s)	1717, 3019
Acc65I	GGTACC	2 cut(s)	2015, 2137
AccB1I	GGYRCC	2 cut(s)	2015, 2137
AccBSI	CCGCTC	1 cut(s)	2362
AccI	GTMKAC	1 cut(s)	1647
AccII	CGCG	5 cut(s)	250, 714, 2647, 3024, 3139
AclI	AACGTT	2 cut(s)	15, 753
AclWI	GGATC	4 cut(s)	817, 1648, 1876, 2960
AcuI	CTGAAG	4 cut(s)	1103, 1278, 2213, 2808
AcyI	GRCGYC	2 cut(s)	120, 2554
AfiI	CCNNNNNNNGG	5 cut(s)	234, 686, 1138, 1726, 2025
AflII	CTTAAG	1 cut(s)	286
AjiI	CACGTC	2 cut(s)	747, 2215
AjnI	CCWGG	5 cut(s)	679, 1275, 1656, 1852, 2685
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
Alw21I	GWGCWC	2 cut(s)	1694, 2584
Alw26I	GTCTC	2 cut(s)	1655, 3156
AlwI	GGATC	4 cut(s)	817, 1648, 1876, 2960
AlwNI	CAGNNNCTG	2 cut(s)	361, 557
Ama87I	CYCGRG	2 cut(s)	629, 902
AoxI	GGCC	2 cut(s)	87, 676
Asp700I	GAANNNNTTC	3 cut(s)	15, 694, 2376
Asp718I	GGTACC	2 cut(s)	2015, 2137
AspLEI	GCGC	7 cut(s)	250, 526, 714, 909, 1637, 3026, 3141
AspS9I	GGNCC	5 cut(s)	88, 300, 677, 1494, 2532
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	7 cut(s)	120, 131, 266, 1154, 1169, 1394, 1939
AvaI	CYCGRG	2 cut(s)	629, 902
AvaII	GGWCC	3 cut(s)	300, 1494, 2532
BaeI	ACNNNNGTAYC	2 cut(s)	2132, 2165
BanI	GGYRCC	2 cut(s)	2015, 2137
BanII	GRGCYC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	2577
BbsI	GAAGAC	4 cut(s)	1735, 1876, 2211, 2395
Bbv12I	GWGCWC	2 cut(s)	1694, 2584
BccI	CCATC	7 cut(s)	1013, 1859, 2177, 2608, 2823, 2845, 2991
BceAI	ACGGC	5 cut(s)	43, 57, 107, 846, 1051
BciT130I	CCWGG	5 cut(s)	681, 1277, 1658, 1854, 2687
BclI	TGATCA	2 cut(s)	133, 1390
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	1655, 3156
BfaI	CTAG	3 cut(s)	758, 2066, 2240
BfmI	CTRYAG	4 cut(s)	774, 1014, 2841, 3012
BfoI	RGCGCY	1 cut(s)	527
BfrI	CTTAAG	1 cut(s)	286
BfuAI	ACCTGC	2 cut(s)	1717, 3019
BglI	GCCNNNNNGGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	2219
Bme1390I	CCNGG	6 cut(s)	280, 681, 1277, 1658, 1854, 2687
Bme18I	GGWCC	3 cut(s)	300, 1494, 2532
BmeT110I	CYCGRG	2 cut(s)	629, 902
BmgBI	CACGTC	2 cut(s)	747, 2215
BmgT120I	GGNCC	5 cut(s)	88, 300, 677, 1494, 2532
BmiI	GGNNCC	5 cut(s)	2017, 2139, 2533, 3066, 3129
BmrFI	CCNGG	6 cut(s)	280, 681, 1277, 1658, 1854, 2687
BmrI	ACTGGG	2 cut(s)	828, 2950
BmuI	ACTGGG	2 cut(s)	828, 2950
BpiI	GAAGAC	4 cut(s)	1735, 1876, 2211, 2395
BpmI	CTGGAG	1 cut(s)	1679
BpuEI	CTTGAG	1 cut(s)	2177
BpuMI	CCSGG	1 cut(s)	280
Bsa29I	ATCGAT	2 cut(s)	2102, 2915
BsaBI	GATNNNNATC	2 cut(s)	1389, 2814
BsaHI	GRCGYC	2 cut(s)	120, 2554
BsaJI	CCNNGG	7 cut(s)	6, 84, 565, 679, 2041, 2872, 3123
BsaWI	WCCGGW	1 cut(s)	1719
Bsc4I	CCNNNNNNNGG	5 cut(s)	234, 686, 1138, 1726, 2025
Bse118I	RCCGGY	2 cut(s)	234, 674
Bse1I	ACTGG	3 cut(s)	823, 2622, 2945
Bse3DI	GCAATG	3 cut(s)	768, 869, 2577
Bse8I	GATNNNNATC	2 cut(s)	1389, 2814
BseBI	CCWGG	5 cut(s)	681, 1277, 1658, 1854, 2687
BseCI	ATCGAT	2 cut(s)	2102, 2915
BseDI	CCNNGG	7 cut(s)	6, 84, 565, 679, 2041, 2872, 3123
BseGI	GGATG	4 cut(s)	592, 1069, 1630, 2911
BseJI	GATNNNNATC	2 cut(s)	1389, 2814
BseLI	CCNNNNNNNGG	5 cut(s)	234, 686, 1138, 1726, 2025
BseMI	GCAATG	3 cut(s)	768, 869, 2577
BseMII	CTCAG	7 cut(s)	203, 885, 2045, 2104, 2136, 2349, 2475
BseNI	ACTGG	3 cut(s)	823, 2622, 2945
BseRI	GAGGAG	1 cut(s)	2558
BsgI	GTGCAG	2 cut(s)	2187, 3103
Bsh1236I	CGCG	5 cut(s)	250, 714, 2647, 3024, 3139
BshFI	GGCC	2 cut(s)	89, 678
BshNI	GGYRCC	2 cut(s)	2015, 2137
BshVI	ATCGAT	2 cut(s)	2102, 2915
BsiHKAI	GWGCWC	2 cut(s)	1694, 2584
BsiHKCI	CYCGRG	2 cut(s)	629, 902
BsiSI	CCGG	6 cut(s)	235, 279, 298, 584, 675, 1720
BsiWI	CGTACG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	2545
BslI	CCNNNNNNNGG	5 cut(s)	234, 686, 1138, 1726, 2025
BsmAI	GTCTC	2 cut(s)	1655, 3156
BsmBI	CGTCTC	1 cut(s)	3156
BsmFI	GGGAC	1 cut(s)	2545
BsmI	GAATGC	1 cut(s)	1133
BsnI	GGCC	2 cut(s)	89, 678
BsoBI	CYCGRG	2 cut(s)	629, 902
Bsp1286I	GDGCHC	3 cut(s)	39, 1694, 2584
Bsp19I	CCATGG	2 cut(s)	565, 2872
Bsp68I	TCGCGA	1 cut(s)	2647
BspANI	GGCC	2 cut(s)	89, 678
BspCNI	CTCAG	7 cut(s)	202, 886, 2044, 2103, 2135, 2350, 2476
BspDI	ATCGAT	2 cut(s)	2102, 2915
BspFNI	CGCG	5 cut(s)	250, 714, 2647, 3024, 3139
BspHI	TCATGA	1 cut(s)	2725
BspLI	GGNNCC	5 cut(s)	2017, 2139, 2533, 3066, 3129
BspMAI	CTGCAG	2 cut(s)	2845, 3016
BspMI	ACCTGC	2 cut(s)	1717, 3019
BspPI	GGATC	4 cut(s)	817, 1648, 1876, 2960
BspQI	GCTCTTC	1 cut(s)	943
BspT107I	GGYRCC	2 cut(s)	2015, 2137
BspTI	CTTAAG	1 cut(s)	286
BsrBI	CCGCTC	1 cut(s)	2362
BsrDI	GCAATG	3 cut(s)	768, 869, 2577
BsrFI	RCCGGY	2 cut(s)	234, 674
BsrI	ACTGG	3 cut(s)	823, 2622, 2945
BssAI	RCCGGY	2 cut(s)	234, 674
BssECI	CCNNGG	7 cut(s)	6, 84, 565, 679, 2041, 2872, 3123
BssNI	GRCGYC	2 cut(s)	120, 2554
BssSI	CACGAG	1 cut(s)	2577
BssT1I	CCWWGG	5 cut(s)	6, 84, 565, 2041, 2872
Bst2BI	CACGAG	1 cut(s)	2577
Bst2UI	CCWGG	5 cut(s)	681, 1277, 1658, 1854, 2687
Bst4CI	ACNGT	3 cut(s)	1677, 3064, 3124
Bst6I	CTCTTC	3 cut(s)	943, 1020, 2018
BstACI	GRCGYC	2 cut(s)	120, 2554
BstAFI	CTTAAG	1 cut(s)	286
BstC8I	GCNNGC	5 cut(s)	232, 640, 676, 2711, 2955
BstDSI	CCRYGG	3 cut(s)	565, 2872, 3123
BstENI	CCTNNNNNAGG	1 cut(s)	2023
BstF5I	GGATG	4 cut(s)	592, 1069, 1630, 2911
BstFNI	CGCG	5 cut(s)	250, 714, 2647, 3024, 3139
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	7 cut(s)	250, 526, 714, 909, 1637, 3026, 3141
BstMAI	GTCTC	2 cut(s)	1655, 3156
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 190, 521, 580, 1634, 1829, 1898, 2719
BstNI	CCWGG	5 cut(s)	681, 1277, 1658, 1854, 2687
BstNSI	RCATGY	3 cut(s)	583, 893, 2930
BstSCI	CCNGG	6 cut(s)	278, 679, 1275, 1656, 1852, 2685
BstSFI	CTRYAG	4 cut(s)	774, 1014, 2841, 3012
BstUI	CGCG	5 cut(s)	250, 714, 2647, 3024, 3139
BstV2I	GAAGAC	4 cut(s)	1735, 1876, 2211, 2395
BstX2I	RGATCY	4 cut(s)	809, 1653, 2219, 2965
BstXI	CCANNNNNNTGG	1 cut(s)	2879
BstYI	RGATCY	4 cut(s)	809, 1653, 2219, 2965
Bsu15I	ATCGAT	2 cut(s)	2102, 2915
BsuRI	GGCC	2 cut(s)	89, 678
BsuTUI	ATCGAT	2 cut(s)	2102, 2915
BtgI	CCRYGG	3 cut(s)	565, 2872, 3123
BtgZI	GCGATG	1 cut(s)	1564
BtrI	CACGTC	2 cut(s)	747, 2215
BtsCI	GGATG	4 cut(s)	592, 1069, 1630, 2911
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	271, 2905
BtuMI	TCGCGA	1 cut(s)	2647
BveI	ACCTGC	2 cut(s)	1717, 3019
Cac8I	GCNNGC	5 cut(s)	232, 640, 676, 2711, 2955
CaiI	CAGNNNCTG	2 cut(s)	361, 557
CciI	TCATGA	1 cut(s)	2725
CfoI	GCGC	7 cut(s)	250, 526, 714, 909, 1637, 3026, 3141
Cfr10I	RCCGGY	2 cut(s)	234, 674
Cfr13I	GGNCC	5 cut(s)	88, 300, 677, 1494, 2532
ClaI	ATCGAT	2 cut(s)	2102, 2915
CpoI	CGGWCCG	1 cut(s)	300
CseI	GACGC	5 cut(s)	128, 449, 2055, 2562, 3138
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CspI	CGGWCCG	1 cut(s)	300
Eam1104I	CTCTTC	3 cut(s)	943, 1020, 2018
EarI	CTCTTC	3 cut(s)	943, 1020, 2018
EciI	GGCGGA	4 cut(s)	45, 59, 180, 1433
Eco130I	CCWWGG	5 cut(s)	6, 84, 565, 2041, 2872
Eco24I	GRGCYC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	1183
Eco47I	GGWCC	3 cut(s)	300, 1494, 2532
Eco57I	CTGAAG	4 cut(s)	1103, 1278, 2213, 2808
Eco88I	CYCGRG	2 cut(s)	629, 902
EcoNI	CCTNNNNNAGG	1 cut(s)	2023
EcoO109I	RGGNCCY	2 cut(s)	88, 2532
EcoRI	GAATTC	2 cut(s)	393, 2504
EcoRII	CCWGG	5 cut(s)	679, 1275, 1656, 1852, 2685
EcoRV	GATATC	1 cut(s)	1183
EcoT14I	CCWWGG	5 cut(s)	6, 84, 565, 2041, 2872
EcoT22I	ATGCAT	1 cut(s)	1069
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	5 cut(s)	6, 84, 565, 2041, 2872
Esp3I	CGTCTC	1 cut(s)	3156
FaqI	GGGAC	1 cut(s)	2545
FauI	CCCGC	4 cut(s)	119, 1129, 2272, 2355
FbaI	TGATCA	2 cut(s)	133, 1390
FblI	GTMKAC	1 cut(s)	1647
FokI	GGATG	4 cut(s)	599, 1076, 1637, 2918
FriOI	GRGCYC	1 cut(s)	39
FspBI	CTAG	3 cut(s)	758, 2066, 2240
GlaI	GCGC	7 cut(s)	249, 525, 713, 908, 1636, 3025, 3140
GsuI	CTGGAG	1 cut(s)	1679
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	89, 678
HapII	CCGG	6 cut(s)	235, 279, 298, 584, 675, 1720
HgaI	GACGC	5 cut(s)	128, 449, 2055, 2562, 3138
HhaI	GCGC	7 cut(s)	250, 526, 714, 909, 1637, 3026, 3141
Hin1I	GRCGYC	2 cut(s)	120, 2554
Hin6I	GCGC	7 cut(s)	248, 524, 712, 907, 1635, 3024, 3139
HinP1I	GCGC	7 cut(s)	248, 524, 712, 907, 1635, 3024, 3139
HincII	GTYRAC	5 cut(s)	562, 1570, 1648, 2061, 2754
HindII	GTYRAC	5 cut(s)	562, 1570, 1648, 2061, 2754
HindIII	AAGCTT	3 cut(s)	1104, 2337, 2591
HpaI	GTTAAC	2 cut(s)	562, 2061
HpaII	CCGG	6 cut(s)	235, 279, 298, 584, 675, 1720
HphI	GGTGA	7 cut(s)	120, 131, 266, 1154, 1169, 1394, 1939
Hpy166II	GTNNAC	7 cut(s)	469, 562, 1497, 1570, 1648, 2061, 2754
Hpy8I	GTNNAC	7 cut(s)	469, 562, 1497, 1570, 1648, 2061, 2754
Hpy99I	CGWCG	4 cut(s)	122, 751, 2249, 3139
HpyAV	CCTTC	7 cut(s)	1261, 1804, 1918, 2162, 2652, 2699, 2793
HpyCH4III	ACNGT	3 cut(s)	1677, 3064, 3124
HpyCH4IV	ACGT	9 cut(s)	15, 746, 753, 2164, 2214, 2247, 2694, 2832, 3134
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 190, 521, 580, 1634, 1829, 1898, 2719
HpySE526I	ACGT	9 cut(s)	15, 746, 753, 2164, 2214, 2247, 2694, 2832, 3134
Hsp92I	GRCGYC	2 cut(s)	120, 2554
HspAI	GCGC	7 cut(s)	248, 524, 712, 907, 1635, 3024, 3139
KpnI	GGTACC	2 cut(s)	2019, 2141
KroI	GCCGGC	1 cut(s)	674
KroNI	GCCGGC	1 cut(s)	676
Ksp22I	TGATCA	2 cut(s)	133, 1390
KspAI	GTTAAC	2 cut(s)	562, 2061
LguI	GCTCTTC	1 cut(s)	943
LmnI	GCTCC	3 cut(s)	282, 1697, 3133
MaeI	CTAG	3 cut(s)	758, 2066, 2240
MaeII	ACGT	9 cut(s)	15, 746, 753, 2164, 2214, 2247, 2694, 2832, 3134
MaeIII	GTNAC	8 cut(s)	814, 1039, 1090, 1147, 1613, 1988, 2410, 2608
MbiI	CCGCTC	1 cut(s)	2362
MflI	RGATCY	4 cut(s)	809, 1653, 2219, 2965
MhlI	GDGCHC	3 cut(s)	39, 1694, 2584
MlyI	GAGTC	6 cut(s)	1037, 1111, 1289, 1890, 2023, 2569
Mph1103I	ATGCAT	1 cut(s)	1069
MroNI	GCCGGC	1 cut(s)	674
MroXI	GAANNNNTTC	3 cut(s)	15, 694, 2376
MslI	CAYNNNNRTG	1 cut(s)	2877
MspA1I	CMGCKG	3 cut(s)	1124, 1982, 2111
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	6 cut(s)	235, 279, 298, 584, 675, 1720
MspR9I	CCNGG	6 cut(s)	280, 681, 1277, 1658, 1854, 2687
Mva1269I	GAATGC	1 cut(s)	1133
MvaI	CCWGG	5 cut(s)	681, 1277, 1658, 1854, 2687
MvnI	CGCG	5 cut(s)	250, 714, 2647, 3024, 3139
MwoI	GCNNNNNNNGC	8 cut(s)	86, 190, 521, 580, 1634, 1829, 1898, 2719
NaeI	GCCGGC	1 cut(s)	676
NciI	CCSGG	1 cut(s)	280
NcoI	CCATGG	2 cut(s)	565, 2872
NgoMIV	GCCGGC	1 cut(s)	674
NlaIV	GGNNCC	5 cut(s)	2017, 2139, 2533, 3066, 3129
NmuCI	GTSAC	6 cut(s)	814, 1090, 1147, 1613, 1988, 2410
NruI	TCGCGA	1 cut(s)	2647
NsiI	ATGCAT	1 cut(s)	1069
NspI	RCATGY	3 cut(s)	583, 893, 2930
PaeR7I	CTCGAG	2 cut(s)	629, 902
PagI	TCATGA	1 cut(s)	2725
PciSI	GCTCTTC	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PctI	GAATGC	1 cut(s)	1133
PdiI	GCCGGC	1 cut(s)	676
PdmI	GAANNNNTTC	3 cut(s)	15, 694, 2376
Pfl23II	CGTACG	1 cut(s)	24
PfoI	TCCNGGA	2 cut(s)	278, 1656
PleI	GAGTC	6 cut(s)	1036, 1111, 1288, 1889, 2023, 2569
PpsI	GAGTC	6 cut(s)	1036, 1111, 1288, 1889, 2023, 2569
PpuMI	RGGWCCY	1 cut(s)	2532
PsiI	TTATAA	1 cut(s)	1532
Psp1406I	AACGTT	2 cut(s)	15, 753
Psp5II	RGGWCCY	1 cut(s)	2532
Psp6I	CCWGG	5 cut(s)	679, 1275, 1656, 1852, 2685
PspGI	CCWGG	5 cut(s)	679, 1275, 1656, 1852, 2685
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	5 cut(s)	2017, 2139, 2533, 3066, 3129
PspPI	GGNCC	5 cut(s)	88, 300, 677, 1494, 2532
PspPPI	RGGWCCY	1 cut(s)	2532
PspXI	VCTCGAGB	2 cut(s)	629, 902
PstI	CTGCAG	2 cut(s)	2845, 3016
PstNI	CAGNNNCTG	2 cut(s)	361, 557
PsuI	RGATCY	4 cut(s)	809, 1653, 2219, 2965
PvuII	CAGCTG	2 cut(s)	1982, 2111
RruI	TCGCGA	1 cut(s)	2647
RseI	CAYNNNNRTG	1 cut(s)	2877
Rsr2I	CGGWCCG	1 cut(s)	300
RsrII	CGGWCCG	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	1646
SapI	GCTCTTC	1 cut(s)	943
Sau96I	GGNCC	5 cut(s)	88, 300, 677, 1494, 2532
SchI	GAGTC	6 cut(s)	1037, 1111, 1289, 1890, 2023, 2569
ScrFI	CCNGG	6 cut(s)	280, 681, 1277, 1658, 1854, 2687
SduI	GDGCHC	3 cut(s)	39, 1694, 2584
SfcI	CTRYAG	4 cut(s)	774, 1014, 2841, 3012
Sfr274I	CTCGAG	2 cut(s)	629, 902
SinI	GGWCC	3 cut(s)	300, 1494, 2532
SlaI	CTCGAG	2 cut(s)	629, 902
SmiMI	CAYNNNNRTG	1 cut(s)	2877
SmlI	CTYRAG	4 cut(s)	286, 629, 902, 2156
SmoI	CTYRAG	4 cut(s)	286, 629, 902, 2156
SspMI	CTAG	3 cut(s)	758, 2066, 2240
StyD4I	CCNGG	6 cut(s)	278, 679, 1275, 1656, 1852, 2685
StyI	CCWWGG	5 cut(s)	6, 84, 565, 2041, 2872
TaaI	ACNGT	3 cut(s)	1677, 3064, 3124
TaiI	ACGT	9 cut(s)	18, 749, 756, 2167, 2217, 2250, 2697, 2835, 3137
TaqII	GACCGA	2 cut(s)	317, 1482
TatI	WGTACW	3 cut(s)	851, 2699, 3168
TauI	GCSGC	3 cut(s)	83, 518, 529
TscAI	CASTG	2 cut(s)	271, 2905
TseFI	GTSAC	6 cut(s)	814, 1090, 1147, 1613, 1988, 2410
Tsp45I	GTSAC	6 cut(s)	814, 1090, 1147, 1613, 1988, 2410
TspGWI	ACGGA	3 cut(s)	1589, 2481, 2739
TspRI	CASTG	2 cut(s)	271, 2905
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	3 cut(s)	300, 1494, 2532
XagI	CCTNNNNNAGG	1 cut(s)	2023
XceI	RCATGY	3 cut(s)	583, 893, 2930
XhoI	CTCGAG	2 cut(s)	629, 902
XmiI	GTMKAC	1 cut(s)	1647
XmnI	GAANNNNTTC	3 cut(s)	15, 694, 2376
XspI	CTAG	3 cut(s)	758, 2066, 2240
Zsp2I	ATGCAT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.