Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

59782047 .. 59782989

Gene Structure 943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG386500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCAGCCGATGCAACAGGCTTCATGGACAGTTTTGTGGAGACTGTTTGTACAGGAGGTAAATGAATGTGAGATACCCTTGTTGCATGACTTCAATGGTAGTGCAAAAGAGAATGGGGCGTCCATTGAGAAGGAAAGACGCCTATTATATGTTGCAATGACTCGTGCTCGAACAGAACTCTTCATCCATTCCAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

66

Amino Acids

7.82

Weight (kDa)

6.05

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UvrD_C	PF13361	16 - 63	3.1e-07	UvrD-like helicase C-terminal domain
UvrD_C_2	PF13538	43 - 62	4.5e-06	UvrD-like helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	2 cut(s)	119, 139
AfaI	GTAC	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	94
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BauI	CACGAG	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BsaHI	GRCGYC	2 cut(s)	119, 139
Bse3DI	GCAATG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp1407I	TGTACA	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	49
BssNI	GRCGYC	2 cut(s)	119, 139
BssSI	CACGAG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	31, 45
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	2 cut(s)	119, 139
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	183
CseI	GACGC	2 cut(s)	108, 147
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	2 cut(s)	24, 86
CviJI	RGCY	2 cut(s)	7, 20
CviKI_1	RGCY	2 cut(s)	7, 20
CviQI	GTAC	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	27, 89
FaiI	YATR	4 cut(s)	25, 87, 148, 150
FatI	CATG	2 cut(s)	23, 85
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HgaI	GACGC	2 cut(s)	108, 147
Hin1I	GRCGYC	2 cut(s)	119, 139
Hin1II	CATG	2 cut(s)	27, 89
HinfI	GANTC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	31, 45
HpyCH4V	TGCA	5 cut(s)	4, 13, 85, 104, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
Hsp92I	GRCGYC	2 cut(s)	119, 139
Hsp92II	CATG	2 cut(s)	27, 89
LpnPI	CCDG	2 cut(s)	2, 38
Lsp1109I	GCAGC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	1 cut(s)	49
MunI	CAATTG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	27, 89
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SatI	GCNGC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	1 cut(s)	60
SgeI	CNNG	8 cut(s)	29, 36, 65, 91, 98, 174, 176, 180
Sse9I	AATT	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	31, 45
TaqI	TCGA	1 cut(s)	169
TasI	AATT	1 cut(s)	193
TatI	WGTACW	1 cut(s)	49
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	12, 78, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.